Wall clock time and date at job start Wed Apr 1 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99732 * 2 1 4 4 H 1.48500 * 109.47302 * 270.00560 * 3 2 1 5 5 H 1.48505 * 109.47016 * 30.00238 * 3 2 1 6 6 H 1.48501 * 109.47251 * 149.99919 * 3 2 1 7 7 C 1.38812 * 120.00746 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00677 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99962 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.45806 * 204.99725 * 10 9 7 12 12 C 1.53199 * 109.31137 * 178.61236 * 11 10 9 13 13 N 1.46920 * 108.77363 * 54.63580 * 12 11 10 14 14 C 1.34787 * 120.63080 * 126.36735 * 13 12 11 15 15 O 1.21281 * 120.00152 * 185.63525 * 14 13 12 16 16 C 1.50700 * 119.99438 * 5.64145 * 14 13 12 17 17 C 1.50701 * 109.89569 * 280.29824 * 16 14 13 18 18 C 1.38240 * 119.99794 * 301.68598 * 17 16 14 19 19 C 1.38242 * 119.99552 * 179.76577 * 18 17 16 20 20 C 1.38231 * 119.99811 * 0.50838 * 19 18 17 21 21 C 1.38234 * 120.00617 * 359.74249 * 20 19 18 22 22 C 1.38229 * 120.00104 * 121.95900 * 17 16 14 23 23 C 1.54379 * 109.82617 * 159.37216 * 16 14 13 24 24 C 1.55309 * 102.43435 * 261.94045 * 23 16 14 25 25 C 1.54940 * 100.94111 * 325.76455 * 24 23 16 26 26 O 1.43647 * 105.13444 * 36.44520 * 25 24 23 27 27 C 1.46923 * 118.74257 * 306.64237 * 13 12 11 28 28 C 1.52766 * 109.00839 * 53.30948 * 27 13 12 29 29 H 0.96991 * 120.00002 * 359.97438 * 1 2 3 30 30 H 0.96997 * 119.99986 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.45708 * 324.96916 * 10 9 7 32 32 H 1.08997 * 109.49576 * 58.66118 * 11 10 9 33 33 H 1.08994 * 109.52414 * 298.57986 * 11 10 9 34 34 H 1.09000 * 109.58591 * 294.84653 * 12 11 10 35 35 H 1.09003 * 109.69949 * 174.49232 * 12 11 10 36 36 H 1.07997 * 120.00557 * 359.97438 * 18 17 16 37 37 H 1.07997 * 119.99712 * 180.22890 * 19 18 17 38 38 H 1.08003 * 120.00182 * 179.72689 * 20 19 18 39 39 H 1.08000 * 120.00841 * 179.97438 * 21 20 19 40 40 H 1.08008 * 119.99675 * 0.02562 * 22 17 16 41 41 H 1.08999 * 110.85261 * 143.65046 * 23 16 14 42 42 H 1.09000 * 110.85462 * 20.23034 * 23 16 14 43 43 H 1.09001 * 111.12733 * 83.68646 * 24 23 16 44 44 H 1.09002 * 111.12542 * 207.84466 * 24 23 16 45 45 H 1.09003 * 110.30968 * 155.35872 * 25 24 23 46 46 H 1.09003 * 110.31350 * 277.42784 * 25 24 23 47 47 H 1.09003 * 109.59035 * 173.14592 * 27 13 12 48 48 H 1.09003 * 109.58088 * 293.57222 * 27 13 12 49 49 H 1.08995 * 109.56471 * 185.55710 * 28 27 13 50 50 H 1.08998 * 109.38466 * 65.51731 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3881 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.1807 -4.7522 -0.6103 12 6 1.9624 -6.0694 -0.6404 13 7 2.4420 -6.3658 0.7163 14 6 2.1733 -7.5528 1.2956 15 8 2.4852 -7.7480 2.4513 16 6 1.4855 -8.6374 0.5072 17 6 0.0033 -8.3705 0.4528 18 6 -0.7236 -8.2661 1.6240 19 6 -2.0824 -8.0165 1.5741 20 6 -2.7159 -7.8817 0.3530 21 6 -1.9900 -7.9913 -0.8183 22 6 -0.6303 -8.2357 -0.7683 23 6 1.7468 -10.0091 1.1655 24 6 2.9192 -10.5702 0.3154 25 6 2.5714 -9.9956 -1.0808 26 8 2.0245 -8.6922 -0.8244 27 6 3.2147 -5.3414 1.4320 28 6 2.4238 -4.0345 1.4368 29 1 -0.4850 0.8400 0.0004 30 1 0.3558 -2.3881 0.0002 31 1 2.9687 -3.5503 -0.5905 32 1 0.9016 -4.4715 -1.6258 33 1 0.2815 -4.8765 -0.0070 34 1 2.8126 -5.9744 -1.3159 35 1 1.3122 -6.8747 -0.9823 36 1 -0.2295 -8.3762 2.5779 37 1 -2.6496 -7.9312 2.4891 38 1 -3.7783 -7.6911 0.3139 39 1 -2.4850 -7.8864 -1.7724 40 1 -0.0631 -8.3221 -1.6834 41 1 0.8691 -10.6506 1.0870 42 1 2.0455 -9.8892 2.2069 43 1 3.8778 -10.1903 0.6689 44 1 2.9105 -11.6601 0.3050 45 1 3.4706 -9.9151 -1.6916 46 1 1.8334 -10.6263 -1.5765 47 1 3.3886 -5.6654 2.4581 48 1 4.1691 -5.1859 0.9289 49 1 3.0293 -3.2430 1.8782 50 1 1.5131 -4.1648 2.0214 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997209626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:14 Heat of formation + Delta-G solvation = -52.451669 kcal Electronic energy + Delta-G solvation = -31904.250258 eV Core-core repulsion = 27895.866393 eV Total energy + Delta-G solvation = -4008.383866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.28437 -40.15441 -39.32534 -38.64835 -36.21075 -33.93959 -33.53429 -33.00180 -31.96154 -31.72279 -31.04771 -29.23159 -26.71935 -25.23559 -24.24793 -24.09093 -23.61102 -22.75079 -22.43217 -21.34043 -20.13542 -19.18476 -18.71035 -18.20681 -17.38463 -16.86066 -16.69351 -16.52426 -16.06253 -15.80565 -15.62966 -15.47186 -15.40554 -15.13075 -14.88183 -14.69843 -14.38586 -14.33773 -14.12555 -13.75314 -13.66413 -13.37836 -13.16267 -12.93691 -12.85587 -12.80798 -12.59564 -12.33248 -12.24562 -12.16184 -12.11839 -11.97456 -11.91512 -11.84838 -11.69230 -11.45974 -11.26256 -10.90575 -10.53083 -9.84410 -9.72293 -9.61686 -9.01904 -7.93650 -5.22571 0.31944 0.47205 1.40729 1.47419 1.48819 1.57050 1.93574 2.49122 2.56702 2.84218 3.36292 3.39620 3.47099 3.54254 3.79905 3.86066 4.00485 4.05127 4.08776 4.11256 4.16197 4.18735 4.29666 4.34650 4.36228 4.37919 4.58353 4.59776 4.66784 4.72759 4.77244 4.80665 4.85781 4.87380 4.91994 4.95511 5.00449 5.01723 5.07412 5.13127 5.16723 5.26786 5.46319 5.51566 5.53419 5.54120 5.57631 5.61331 5.83896 6.06086 6.27914 6.35819 7.00475 7.34027 8.08922 8.32953 9.29971 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003276 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.795353 B = 8544.410700 C = 9511.387848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.176 3.824 11 C -0.126 4.126 12 C 0.120 3.880 13 N -0.592 5.592 14 C 0.518 3.482 15 O -0.573 6.573 16 C 0.146 3.854 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.134 4.134 24 C -0.148 4.148 25 C 0.040 3.960 26 O -0.366 6.366 27 C 0.118 3.882 28 C -0.136 4.136 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.061 0.939 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.016 -26.523 -3.444 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.067 3.933 11 C -0.165 4.165 12 C -0.002 4.002 13 N -0.323 5.323 14 C 0.306 3.694 15 O -0.453 6.453 16 C 0.103 3.897 17 C -0.105 4.105 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.172 4.172 24 C -0.186 4.186 25 C -0.035 4.035 26 O -0.286 6.286 27 C -0.005 4.005 28 C -0.177 4.177 29 H 0.059 0.941 30 H 0.202 0.798 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.102 0.898 49 H 0.079 0.921 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.354 -26.313 -3.015 26.520 hybrid contribution -0.156 1.406 0.645 1.555 sum 1.198 -24.907 -2.370 25.048 Atomic orbital electron populations 1.69820 1.06643 1.25947 1.59739 1.25535 0.96316 1.01003 1.03910 0.85178 0.77695 0.79663 0.77465 1.21262 1.22487 1.19480 1.19629 0.91445 0.85147 1.40736 0.90522 1.42637 1.05358 1.00959 1.88568 1.20384 0.94556 0.85035 0.93293 1.22062 0.98299 0.94688 1.01489 1.21980 0.99366 0.97012 0.81817 1.48131 1.52786 1.14127 1.17228 1.20989 0.78032 0.83591 0.86809 1.90635 1.55005 1.81457 1.18248 1.20794 0.90002 0.94831 0.84084 1.19730 0.92967 1.03168 0.94630 1.21020 0.95070 1.00495 0.97555 1.21342 0.94174 0.99807 0.99213 1.21534 1.01240 0.98671 0.92329 1.21503 0.93999 0.99051 0.99477 1.21172 0.94971 0.98278 0.97431 1.23109 1.00558 0.92221 1.01298 1.23275 0.97705 1.03251 0.94349 1.23739 0.99564 0.83143 0.97071 1.88569 1.77604 1.34182 1.28226 1.21510 0.94332 0.86731 0.97943 1.22350 0.99267 0.96055 1.00032 0.94117 0.79788 0.93124 0.90283 0.93591 0.89991 0.86700 0.87088 0.84680 0.83924 0.83559 0.83873 0.88401 0.89606 0.91233 0.86879 0.87752 0.89806 0.90341 0.89824 0.92066 0.94582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.00 13.06 21.65 0.28 -59.72 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.24 -13.23 9.93 84.03 0.83 -12.40 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -37.60 5.12 -322.82 -1.65 -39.25 16 10 C 0.18 7.02 2.73 45.02 0.12 7.14 16 11 C -0.13 -4.23 5.55 30.67 0.17 -4.06 16 12 C 0.12 3.29 5.45 86.37 0.47 3.76 16 13 N -0.59 -17.85 2.98 -819.71 -2.44 -20.29 16 14 C 0.52 15.65 6.27 87.66 0.55 16.20 16 15 O -0.57 -20.33 14.89 -3.03 -0.05 -20.38 16 16 C 0.15 3.36 0.61 -11.82 -0.01 3.36 16 17 C -0.10 -2.44 4.07 -19.87 -0.08 -2.53 16 18 C -0.12 -3.07 9.00 22.27 0.20 -2.87 16 19 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 20 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 21 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 22 C -0.10 -2.07 8.19 22.27 0.18 -1.89 16 23 C -0.13 -2.55 5.73 31.86 0.18 -2.37 16 24 C -0.15 -2.03 7.16 32.05 0.23 -1.80 16 25 C 0.04 0.52 7.78 72.65 0.57 1.09 16 26 O -0.37 -7.24 6.57 -148.98 -0.98 -8.21 16 27 C 0.12 3.74 6.41 86.22 0.55 4.30 16 28 C -0.14 -5.17 5.64 30.53 0.17 -4.99 16 29 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.37 20.56 7.80 -92.71 -0.72 19.83 16 31 H 0.05 2.00 8.08 -2.39 -0.02 1.98 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.12 2.84 2.98 -2.39 -0.01 2.83 16 36 H 0.11 2.95 8.03 -2.91 -0.02 2.93 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 40 H 0.14 2.56 6.71 -2.91 -0.02 2.55 16 41 H 0.10 1.59 7.84 -2.39 -0.02 1.57 16 42 H 0.09 1.98 6.71 -2.39 -0.02 1.96 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.08 2.61 7.00 -2.39 -0.02 2.59 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 50 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.26 390.52 2.69 -67.57 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.22 Total: 39.61 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: 5.28 Total: -7.77 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -3.81 Total: -119.26 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.02 Total: -28.59 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -70.26 2.69 -67.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997209626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.118 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds