Wall clock time and date at job start Wed Apr 1 2020 02:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99943 * 2 1 4 4 H 1.48502 * 109.47292 * 240.00091 * 3 2 1 5 5 H 1.48505 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47155 * 120.00467 * 3 2 1 7 7 C 1.38811 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99857 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50247 * 325.06362 * 10 9 7 12 12 C 1.53036 * 109.49979 * 85.16341 * 10 9 7 13 13 C 1.53040 * 109.54247 * 181.31421 * 12 10 9 14 14 C 1.53622 * 109.24061 * 298.51048 * 13 12 10 15 15 N 1.46931 * 108.54607 * 54.85253 * 14 13 12 16 16 C 1.34776 * 120.63215 * 126.36400 * 15 14 13 17 17 O 1.21276 * 120.00100 * 179.72341 * 16 15 14 18 18 C 1.50704 * 119.99889 * 359.72906 * 16 15 14 19 19 C 1.52995 * 109.47074 * 185.91496 * 18 16 15 20 20 H 1.09005 * 109.40174 * 305.92295 * 19 18 16 21 21 C 1.53071 * 109.43577 * 65.81625 * 19 18 16 22 22 C 1.53407 * 108.30187 * 168.22849 * 21 19 18 23 23 O 1.42830 * 108.36707 * 295.26017 * 22 21 19 24 24 C 1.35851 * 117.84697 * 49.21594 * 23 22 21 25 25 C 1.39139 * 118.49417 * 162.88127 * 24 23 22 26 26 C 1.37973 * 120.21019 * 179.80057 * 25 24 23 27 27 C 1.38286 * 119.96206 * 359.97438 * 26 25 24 28 28 C 1.38103 * 119.98036 * 0.23264 * 27 26 25 29 29 C 1.38373 * 121.80268 * 342.80081 * 24 23 22 30 30 C 1.46923 * 118.73588 * 306.09978 * 15 14 13 31 31 H 0.96996 * 120.00334 * 359.97438 * 1 2 3 32 32 H 0.96991 * 119.99377 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46206 * 301.33364 * 12 10 9 34 34 H 1.08998 * 109.45990 * 61.28953 * 12 10 9 35 35 H 1.09001 * 109.49854 * 58.58256 * 13 12 10 36 36 H 1.08999 * 109.50001 * 178.68303 * 13 12 10 37 37 H 1.09006 * 109.74245 * 295.11811 * 14 13 12 38 38 H 1.08994 * 109.66678 * 174.54875 * 14 13 12 39 39 H 1.08998 * 109.47190 * 65.91130 * 18 16 15 40 40 H 1.08999 * 109.47043 * 305.91183 * 18 16 15 41 41 H 1.09002 * 109.69539 * 48.52491 * 21 19 18 42 42 H 1.08994 * 109.72825 * 287.94874 * 21 19 18 43 43 H 1.09003 * 109.68301 * 175.55002 * 22 21 19 44 44 H 1.08992 * 109.72005 * 55.00085 * 22 21 19 45 45 H 1.07998 * 119.90015 * 359.77176 * 25 24 23 46 46 H 1.08000 * 120.02010 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.01150 * 180.10088 * 27 26 25 48 48 H 1.08001 * 119.84126 * 180.02562 * 28 27 26 49 49 H 1.09001 * 109.58732 * 173.64644 * 30 15 14 50 50 H 1.09001 * 109.58809 * 294.06432 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9694 -3.5507 -0.5889 12 6 2.4188 -4.0383 1.4369 13 6 3.2126 -5.3468 1.4354 14 6 2.3429 -6.4657 0.8423 15 7 1.8768 -6.0416 -0.4849 16 6 2.0794 -6.8212 -1.5655 17 8 1.6853 -6.4621 -2.6548 18 6 2.7955 -8.1392 -1.4201 19 6 3.0232 -8.7512 -2.8036 20 1 2.0723 -8.8140 -3.3328 21 6 3.9907 -7.8698 -3.5975 22 6 4.4316 -8.6428 -4.8471 23 8 5.1740 -9.7890 -4.4287 24 6 4.6336 -10.5772 -3.4631 25 6 5.1392 -11.8626 -3.2956 26 6 4.6194 -12.6918 -2.3230 27 6 3.5931 -12.2450 -1.5109 28 6 3.0861 -10.9713 -1.6772 29 6 3.6046 -10.1339 -2.6511 30 6 1.1803 -4.7540 -0.6108 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 3.0231 -3.2477 1.8818 34 1 1.5059 -4.1680 2.0182 35 1 4.1133 -5.2252 0.8338 36 1 3.4893 -5.6057 2.4574 37 1 1.4852 -6.6478 1.4898 38 1 2.9324 -7.3777 0.7483 39 1 2.1904 -8.8170 -0.8180 40 1 3.7564 -7.9786 -0.9312 41 1 4.8609 -7.6350 -2.9846 42 1 3.4901 -6.9480 -3.8934 43 1 5.0598 -8.0060 -5.4701 44 1 3.5550 -8.9593 -5.4122 45 1 5.9406 -12.2128 -3.9292 46 1 5.0138 -13.6891 -2.1959 47 1 3.1868 -12.8928 -0.7482 48 1 2.2848 -10.6245 -1.0415 49 1 1.0024 -4.5362 -1.6639 50 1 0.2297 -4.7993 -0.0794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999894793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:46 Heat of formation + Delta-G solvation = -43.301959 kcal Electronic energy + Delta-G solvation = -30345.710688 eV Core-core repulsion = 26337.723584 eV Total energy + Delta-G solvation = -4007.987104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.15901 -39.94346 -37.71813 -37.50670 -35.28173 -34.52172 -32.25737 -31.30285 -30.92049 -30.51352 -29.64952 -28.07874 -25.43653 -24.48583 -23.95837 -23.45869 -22.29081 -22.07527 -20.29893 -19.83755 -18.78166 -18.15802 -17.30114 -17.21495 -16.68286 -16.17282 -15.73780 -15.48515 -15.07499 -14.77658 -14.48542 -14.22339 -14.13551 -14.00423 -13.80523 -13.52757 -13.43406 -13.30690 -13.04330 -12.88650 -12.72758 -12.67050 -12.23053 -12.04478 -11.78560 -11.55718 -11.15613 -11.07381 -10.98197 -10.91539 -10.89992 -10.68841 -10.51326 -10.43339 -10.37881 -10.12205 -9.76877 -9.59762 -9.05004 -8.93249 -8.43075 -8.38605 -7.01507 -5.79842 -3.09641 1.04025 1.17460 2.69708 3.04901 3.10410 3.42272 3.46895 3.47721 3.50505 4.23600 4.34623 4.47973 4.56618 4.58027 4.70160 4.84146 4.88070 4.95763 5.00725 5.04843 5.09827 5.13268 5.21515 5.26311 5.28181 5.40941 5.49785 5.53586 5.54292 5.59540 5.69334 5.73029 5.73389 5.78530 5.92643 5.98283 6.02038 6.04973 6.12654 6.21487 6.22440 6.27339 6.35987 6.51668 6.53294 6.67295 6.84951 7.01562 7.22716 7.54561 7.66428 8.27042 8.38273 9.49195 10.04365 10.39342 11.42537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002262 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.597502 B =12376.544858 C =13035.032862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.131 4.131 19 C -0.029 4.029 20 H 0.094 0.906 21 C -0.158 4.158 22 C 0.063 3.937 23 O -0.319 6.319 24 C 0.136 3.864 25 C -0.152 4.152 26 C -0.090 4.090 27 C -0.154 4.154 28 C -0.085 4.085 29 C -0.153 4.153 30 C 0.106 3.894 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -26.406 -2.033 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.017 4.017 15 N -0.338 5.338 16 C 0.300 3.700 17 O -0.419 6.419 18 C -0.171 4.171 19 C -0.047 4.047 20 H 0.113 0.887 21 C -0.195 4.195 22 C -0.012 4.012 23 O -0.233 6.233 24 C 0.091 3.909 25 C -0.171 4.171 26 C -0.108 4.108 27 C -0.172 4.172 28 C -0.103 4.103 29 C -0.153 4.153 30 C -0.017 4.017 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.111 0.889 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.412 -26.045 -2.736 27.506 hybrid contribution -0.032 1.113 0.370 1.173 sum 8.380 -24.932 -2.366 26.409 Atomic orbital electron populations 1.69645 1.05105 1.25876 1.57349 1.24749 0.95532 0.97717 1.02805 0.86261 0.78532 0.83487 0.77856 1.21222 1.21657 1.21263 1.19151 0.90915 0.83895 1.43131 0.91244 1.42303 1.05793 0.99521 1.88597 1.20464 0.94616 0.85994 0.93114 0.93284 1.22288 0.99599 0.95260 1.00678 1.22007 0.98761 0.95994 1.00449 1.21885 0.98404 0.97655 0.83747 1.48140 1.57542 1.20477 1.07648 1.20523 0.79613 0.85866 0.83963 1.90673 1.51582 1.73869 1.25789 1.21804 1.01977 0.94861 0.98447 1.19763 0.99600 0.89866 0.95497 0.88749 1.22379 0.99869 1.00331 0.96961 1.23019 0.96649 0.85187 0.96351 1.85981 1.46620 1.38046 1.52653 1.18720 0.92958 0.90208 0.88995 1.20603 1.03321 0.91469 1.01658 1.20920 0.96112 0.99198 0.94555 1.21018 0.98634 0.96430 1.01133 1.20968 0.99030 0.93479 0.96848 1.19850 0.99486 0.97046 0.98962 1.21999 0.94982 0.81414 1.03288 0.93388 0.78200 0.91573 0.92482 0.91854 0.91363 0.91293 0.90257 0.88521 0.88737 0.90792 0.87888 0.87355 0.91634 0.85382 0.85582 0.85924 0.85698 0.88915 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -17.81 5.12 -53.31 -0.27 -18.08 16 10 C 0.17 3.30 2.92 -67.81 -0.20 3.10 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.29 5.46 -26.69 -0.15 -2.43 16 13 C -0.13 -1.62 6.10 -26.39 -0.16 -1.78 16 14 C 0.11 1.14 6.37 -3.48 -0.02 1.12 16 15 N -0.60 -8.40 2.97 -172.50 -0.51 -8.91 16 16 C 0.51 7.07 7.38 -10.98 -0.08 6.99 16 17 O -0.54 -9.33 13.70 5.56 0.08 -9.26 16 18 C -0.13 -1.29 3.28 -27.88 -0.09 -1.38 16 19 C -0.03 -0.30 2.02 -91.70 -0.18 -0.49 16 20 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 21 C -0.16 -1.70 5.08 -26.48 -0.13 -1.83 16 22 C 0.06 0.60 7.03 37.37 0.26 0.87 16 23 O -0.32 -3.58 10.27 -19.27 -0.20 -3.78 16 24 C 0.14 1.48 6.47 -39.20 -0.25 1.22 16 25 C -0.15 -1.41 9.94 -39.34 -0.39 -1.80 16 26 C -0.09 -0.70 10.04 -39.66 -0.40 -1.10 16 27 C -0.15 -1.19 10.04 -39.61 -0.40 -1.59 16 28 C -0.09 -0.73 9.09 -39.53 -0.36 -1.09 16 29 C -0.15 -1.54 5.43 -104.44 -0.57 -2.11 16 30 C 0.11 1.83 5.90 -3.71 -0.02 1.81 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.63 5.88 -51.93 -0.31 0.33 16 39 H 0.10 0.76 6.23 -51.93 -0.32 0.43 16 40 H 0.09 0.84 7.34 -51.93 -0.38 0.46 16 41 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 42 H 0.10 1.28 6.56 -51.93 -0.34 0.94 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.86 6.38 -52.49 -0.33 0.53 16 49 H 0.09 1.82 7.01 -51.93 -0.36 1.45 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -32.28 390.60 -10.52 -42.80 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.81 Total: 8.95 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.39 Total: -7.68 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.06 Total: -54.20 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.12 Total: -13.03 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.28 -10.52 -42.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.507 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds