Wall clock time and date at job start Wed Apr 1 2020 02:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 119.99943 * 2 1 4 4 H 1.48502 * 109.47292 * 240.00091 * 3 2 1 5 5 H 1.48505 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47155 * 120.00467 * 3 2 1 7 7 C 1.38811 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00019 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99857 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50247 * 325.06362 * 10 9 7 12 12 C 1.53036 * 109.49979 * 85.16341 * 10 9 7 13 13 C 1.53040 * 109.54247 * 181.31421 * 12 10 9 14 14 C 1.53622 * 109.24061 * 298.51048 * 13 12 10 15 15 N 1.46931 * 108.54607 * 54.85253 * 14 13 12 16 16 C 1.34776 * 120.63215 * 126.36400 * 15 14 13 17 17 O 1.21276 * 120.00100 * 179.72341 * 16 15 14 18 18 C 1.50704 * 119.99889 * 359.72906 * 16 15 14 19 19 C 1.52995 * 109.47074 * 185.91496 * 18 16 15 20 20 H 1.09005 * 109.40174 * 305.92295 * 19 18 16 21 21 C 1.53071 * 109.43577 * 65.81625 * 19 18 16 22 22 C 1.53407 * 108.30187 * 168.22849 * 21 19 18 23 23 O 1.42830 * 108.36707 * 295.26017 * 22 21 19 24 24 C 1.35851 * 117.84697 * 49.21594 * 23 22 21 25 25 C 1.39139 * 118.49417 * 162.88127 * 24 23 22 26 26 C 1.37973 * 120.21019 * 179.80057 * 25 24 23 27 27 C 1.38286 * 119.96206 * 359.97438 * 26 25 24 28 28 C 1.38103 * 119.98036 * 0.23264 * 27 26 25 29 29 C 1.38373 * 121.80268 * 342.80081 * 24 23 22 30 30 C 1.46923 * 118.73588 * 306.09978 * 15 14 13 31 31 H 0.96996 * 120.00334 * 359.97438 * 1 2 3 32 32 H 0.96991 * 119.99377 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46206 * 301.33364 * 12 10 9 34 34 H 1.08998 * 109.45990 * 61.28953 * 12 10 9 35 35 H 1.09001 * 109.49854 * 58.58256 * 13 12 10 36 36 H 1.08999 * 109.50001 * 178.68303 * 13 12 10 37 37 H 1.09006 * 109.74245 * 295.11811 * 14 13 12 38 38 H 1.08994 * 109.66678 * 174.54875 * 14 13 12 39 39 H 1.08998 * 109.47190 * 65.91130 * 18 16 15 40 40 H 1.08999 * 109.47043 * 305.91183 * 18 16 15 41 41 H 1.09002 * 109.69539 * 48.52491 * 21 19 18 42 42 H 1.08994 * 109.72825 * 287.94874 * 21 19 18 43 43 H 1.09003 * 109.68301 * 175.55002 * 22 21 19 44 44 H 1.08992 * 109.72005 * 55.00085 * 22 21 19 45 45 H 1.07998 * 119.90015 * 359.77176 * 25 24 23 46 46 H 1.08000 * 120.02010 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.01150 * 180.10088 * 27 26 25 48 48 H 1.08001 * 119.84126 * 180.02562 * 28 27 26 49 49 H 1.09001 * 109.58732 * 173.64644 * 30 15 14 50 50 H 1.09001 * 109.58809 * 294.06432 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9694 -3.5507 -0.5889 12 6 2.4188 -4.0383 1.4369 13 6 3.2126 -5.3468 1.4354 14 6 2.3429 -6.4657 0.8423 15 7 1.8768 -6.0416 -0.4849 16 6 2.0794 -6.8212 -1.5655 17 8 1.6853 -6.4621 -2.6548 18 6 2.7955 -8.1392 -1.4201 19 6 3.0232 -8.7512 -2.8036 20 1 2.0723 -8.8140 -3.3328 21 6 3.9907 -7.8698 -3.5975 22 6 4.4316 -8.6428 -4.8471 23 8 5.1740 -9.7890 -4.4287 24 6 4.6336 -10.5772 -3.4631 25 6 5.1392 -11.8626 -3.2956 26 6 4.6194 -12.6918 -2.3230 27 6 3.5931 -12.2450 -1.5109 28 6 3.0861 -10.9713 -1.6772 29 6 3.6046 -10.1339 -2.6511 30 6 1.1803 -4.7540 -0.6108 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 0.0002 33 1 3.0231 -3.2477 1.8818 34 1 1.5059 -4.1680 2.0182 35 1 4.1133 -5.2252 0.8338 36 1 3.4893 -5.6057 2.4574 37 1 1.4852 -6.6478 1.4898 38 1 2.9324 -7.3777 0.7483 39 1 2.1904 -8.8170 -0.8180 40 1 3.7564 -7.9786 -0.9312 41 1 4.8609 -7.6350 -2.9846 42 1 3.4901 -6.9480 -3.8934 43 1 5.0598 -8.0060 -5.4701 44 1 3.5550 -8.9593 -5.4122 45 1 5.9406 -12.2128 -3.9292 46 1 5.0138 -13.6891 -2.1959 47 1 3.1868 -12.8928 -0.7482 48 1 2.2848 -10.6245 -1.0415 49 1 1.0024 -4.5362 -1.6639 50 1 0.2297 -4.7993 -0.0794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999894793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:45 Heat of formation + Delta-G solvation = -62.315179 kcal Electronic energy + Delta-G solvation = -30346.535163 eV Core-core repulsion = 26337.723584 eV Total energy + Delta-G solvation = -4008.811579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.95918 -41.01515 -38.79749 -38.39080 -36.21815 -36.12936 -33.87370 -32.73869 -31.66485 -31.20497 -30.78640 -29.47014 -26.52290 -25.95934 -25.02739 -24.43496 -23.38383 -23.06731 -21.49705 -20.79005 -19.96172 -19.15229 -18.90067 -18.23288 -17.46081 -17.12665 -16.86899 -16.54343 -16.44154 -15.85769 -15.57416 -15.44736 -15.29121 -15.07866 -14.84685 -14.73892 -14.66940 -14.29729 -14.11305 -13.95620 -13.80687 -13.59105 -13.45279 -12.95400 -12.85963 -12.73874 -12.53251 -12.37021 -12.30678 -12.17984 -12.10212 -11.91641 -11.84098 -11.71492 -11.65426 -11.60942 -11.24981 -10.91892 -10.75648 -9.70816 -9.64990 -9.08008 -9.04477 -7.97316 -5.26891 0.40102 0.52349 1.44625 1.47759 1.53761 1.62351 1.96306 2.37344 2.54610 2.85615 3.34903 3.38895 3.59182 3.68441 3.80912 3.84122 3.88741 4.01629 4.11864 4.15264 4.18599 4.26808 4.28453 4.30909 4.34629 4.36671 4.45634 4.53639 4.58563 4.63828 4.70495 4.78135 4.81147 4.83039 4.85869 4.89610 5.07130 5.08447 5.11701 5.16830 5.17882 5.39992 5.42062 5.42235 5.51971 5.57717 5.59142 5.65750 5.93194 6.24315 6.46697 6.50414 7.18183 7.30111 8.03373 8.27425 9.25719 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019944 B = 0.002262 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.597502 B =12376.544858 C =13035.032862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.168 3.832 11 H 0.029 0.971 12 C -0.129 4.129 13 C -0.125 4.125 14 C 0.103 3.897 15 N -0.605 5.605 16 C 0.508 3.492 17 O -0.584 6.584 18 C -0.119 4.119 19 C -0.025 4.025 20 H 0.077 0.923 21 C -0.155 4.155 22 C 0.063 3.937 23 O -0.333 6.333 24 C 0.109 3.891 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.152 4.152 28 C -0.089 4.089 29 C -0.163 4.163 30 C 0.120 3.880 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.043 0.957 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.134 0.866 46 H 0.152 0.848 47 H 0.149 0.851 48 H 0.145 0.855 49 H 0.060 0.940 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.760 -29.369 -0.089 30.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.801 3.199 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.047 0.953 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.018 4.018 15 N -0.338 5.338 16 C 0.298 3.702 17 O -0.464 6.464 18 C -0.158 4.158 19 C -0.044 4.044 20 H 0.096 0.904 21 C -0.193 4.193 22 C -0.012 4.012 23 O -0.247 6.247 24 C 0.064 3.936 25 C -0.183 4.183 26 C -0.106 4.106 27 C -0.170 4.170 28 C -0.107 4.107 29 C -0.164 4.164 30 C -0.005 4.005 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.131 0.869 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.140 0.860 44 H 0.083 0.917 45 H 0.152 0.848 46 H 0.170 0.830 47 H 0.167 0.833 48 H 0.163 0.837 49 H 0.079 0.921 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.876 -29.068 -0.765 30.710 hybrid contribution -0.446 1.916 -0.262 1.985 sum 9.430 -27.152 -1.027 28.761 Atomic orbital electron populations 1.69802 1.06545 1.26187 1.59297 1.25558 0.96411 1.01053 1.03658 0.85230 0.77240 0.79241 0.78165 1.20712 1.22052 1.20128 1.19490 0.91205 0.85093 1.41377 0.91011 1.42489 1.05450 1.00791 1.88872 1.20627 0.93605 0.84825 0.95095 0.95255 1.22078 0.99943 0.97360 0.97503 1.21968 0.98012 0.93695 1.02661 1.22200 0.99349 0.98369 0.81866 1.48214 1.57227 1.18952 1.09384 1.21299 0.78956 0.86889 0.83075 1.90666 1.53231 1.74975 1.27539 1.21821 1.02677 0.92588 0.98708 1.19662 0.98618 0.90447 0.95642 0.90448 1.22291 0.99683 0.99632 0.97649 1.23060 0.96969 0.85107 0.96048 1.85956 1.47178 1.38387 1.53203 1.19050 0.94022 0.90951 0.89554 1.20849 1.03758 0.91265 1.02450 1.21283 0.95725 1.00015 0.93571 1.21387 0.98033 0.96346 1.01241 1.21235 0.99278 0.93681 0.96488 1.19829 0.99814 0.96865 0.99852 1.21529 0.95044 0.82884 1.00997 0.93954 0.79499 0.93807 0.92534 0.92092 0.88062 0.89592 0.86190 0.85392 0.86857 0.90910 0.90225 0.86044 0.91688 0.84844 0.83013 0.83281 0.83738 0.92110 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.61 29.55 68.60 2.03 48.64 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.49 9.93 84.03 0.83 -12.66 16 8 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.74 -37.64 5.12 -322.58 -1.65 -39.30 16 10 C 0.17 6.70 2.92 45.07 0.13 6.83 16 11 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 12 C -0.13 -4.18 5.46 30.62 0.17 -4.01 16 13 C -0.12 -2.65 6.10 30.82 0.19 -2.46 16 14 C 0.10 1.81 6.37 86.51 0.55 2.36 16 15 N -0.61 -15.96 2.97 -818.06 -2.43 -18.39 16 16 C 0.51 13.53 7.38 87.66 0.65 14.18 16 17 O -0.58 -20.77 13.70 -3.02 -0.04 -20.81 16 18 C -0.12 -2.02 3.28 29.85 0.10 -1.92 16 19 C -0.03 -0.50 2.02 -11.50 -0.02 -0.52 16 20 H 0.08 1.80 7.83 -2.38 -0.02 1.78 16 21 C -0.15 -3.39 5.08 30.75 0.16 -3.23 16 22 C 0.06 1.24 7.03 72.12 0.51 1.75 16 23 O -0.33 -7.43 10.27 -91.87 -0.94 -8.38 16 24 C 0.11 2.25 6.47 22.52 0.15 2.39 16 25 C -0.16 -2.79 9.94 22.42 0.22 -2.56 16 26 C -0.09 -1.10 10.04 22.22 0.22 -0.87 16 27 C -0.15 -1.76 10.04 22.25 0.22 -1.54 16 28 C -0.09 -1.22 9.09 22.30 0.20 -1.02 16 29 C -0.16 -2.99 5.43 -19.75 -0.11 -3.10 16 30 C 0.12 4.23 5.90 86.36 0.51 4.74 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 33 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.21 5.88 -2.39 -0.01 1.20 16 39 H 0.13 1.41 6.23 -2.39 -0.01 1.39 16 40 H 0.11 1.57 7.34 -2.39 -0.02 1.55 16 41 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 42 H 0.08 2.11 6.56 -2.39 -0.02 2.10 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 48 H 0.14 1.33 6.38 -2.91 -0.02 1.31 16 49 H 0.06 2.53 7.01 -2.39 -0.02 2.51 16 50 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -74.05 390.60 2.61 -71.44 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.22 Total: 31.73 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.14 Total: -5.50 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -3.80 Total: -117.12 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.99 Total: -29.19 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.05 2.61 -71.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.123 kcal (2) G-P(sol) polarization free energy of solvation -74.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds