Wall clock time and date at job start Wed Apr 1 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47186 * 270.00075 * 3 2 1 5 5 H 1.48500 * 109.47090 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47331 * 150.00189 * 3 2 1 7 7 C 1.38810 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00158 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00073 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49633 * 325.06198 * 10 9 7 12 12 C 1.53040 * 109.50172 * 85.16080 * 10 9 7 13 13 C 1.53039 * 109.54286 * 181.31855 * 12 10 9 14 14 C 1.53628 * 109.23750 * 298.51192 * 13 12 10 15 15 N 1.46919 * 108.54448 * 54.85590 * 14 13 12 16 16 C 1.34776 * 120.63015 * 126.36831 * 15 14 13 17 17 O 1.21287 * 120.00077 * 179.72333 * 16 15 14 18 18 C 1.50697 * 120.00014 * 359.71721 * 16 15 14 19 19 C 1.53003 * 109.47154 * 173.97685 * 18 16 15 20 20 H 1.09000 * 109.39898 * 53.88669 * 19 18 16 21 21 C 1.53071 * 109.43919 * 293.99209 * 19 18 16 22 22 C 1.53405 * 108.29909 * 191.72632 * 21 19 18 23 23 O 1.42834 * 108.38027 * 64.70561 * 22 21 19 24 24 C 1.35841 * 117.85726 * 310.81538 * 23 22 21 25 25 C 1.39152 * 118.49711 * 196.98282 * 24 23 22 26 26 C 1.37964 * 120.21508 * 180.43910 * 25 24 23 27 27 C 1.38281 * 119.95935 * 359.97320 * 26 25 24 28 28 C 1.38108 * 119.98675 * 359.92348 * 27 26 25 29 29 C 1.38365 * 121.80705 * 17.24410 * 24 23 22 30 30 C 1.46927 * 118.74150 * 306.09300 * 15 14 13 31 31 H 0.97006 * 120.00076 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00162 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.45750 * 301.34051 * 12 10 9 34 34 H 1.08997 * 109.45678 * 61.29095 * 12 10 9 35 35 H 1.09001 * 109.49579 * 58.58432 * 13 12 10 36 36 H 1.09002 * 109.49983 * 178.65366 * 13 12 10 37 37 H 1.09001 * 109.73552 * 295.11459 * 14 13 12 38 38 H 1.09001 * 109.66127 * 174.55087 * 14 13 12 39 39 H 1.09001 * 109.47218 * 53.98013 * 18 16 15 40 40 H 1.09000 * 109.47137 * 293.97453 * 18 16 15 41 41 H 1.08992 * 109.69865 * 72.02265 * 21 19 18 42 42 H 1.08998 * 109.69640 * 311.42543 * 21 19 18 43 43 H 1.09002 * 109.68133 * 184.42452 * 22 21 19 44 44 H 1.08998 * 109.68526 * 304.98503 * 22 21 19 45 45 H 1.07999 * 119.88715 * 0.42866 * 25 24 23 46 46 H 1.08004 * 120.01780 * 179.97438 * 26 25 24 47 47 H 1.08007 * 120.01168 * 179.89658 * 27 26 25 48 48 H 1.07997 * 119.84622 * 180.02562 * 28 27 26 49 49 H 1.08992 * 109.58910 * 173.65013 * 30 15 14 50 50 H 1.09004 * 109.58639 * 294.07588 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5642 -3.2073 0.5892 12 6 4.2627 -2.9739 -1.4364 13 6 4.9990 -4.3155 -1.4349 14 6 6.4026 -4.1219 -0.8412 15 7 6.2677 -3.5065 0.4861 16 6 6.8412 -4.0719 1.5667 17 8 6.7268 -3.5514 2.6562 18 6 7.6246 -5.3511 1.4213 19 6 8.2901 -5.6960 2.7552 20 1 7.5356 -5.7165 3.5416 21 6 9.3438 -4.6366 3.0877 22 6 10.1914 -5.1512 4.2582 23 8 10.9019 -6.3117 3.8238 24 6 10.1988 -7.2863 3.1905 25 6 10.7682 -8.5512 3.0809 26 6 10.0892 -9.5649 2.4368 27 6 8.8384 -9.3247 1.8983 28 6 8.2692 -8.0711 2.0070 29 6 8.9457 -7.0498 2.6536 30 6 5.5009 -2.2595 0.6120 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 3.2760 -3.1016 -1.8817 34 1 4.8316 -2.2480 -2.0173 35 1 4.4430 -5.0349 -0.8336 36 1 5.0848 -4.6847 -2.4569 37 1 6.9893 -3.4700 -1.4884 38 1 6.8976 -5.0885 -0.7472 39 1 8.3899 -5.2235 0.6558 40 1 6.9518 -6.1582 1.1316 41 1 8.8524 -3.7060 3.3712 42 1 9.9807 -4.4668 2.2196 43 1 10.8991 -4.3812 4.5654 44 1 9.5430 -5.4097 5.0953 45 1 11.7450 -8.7400 3.5013 46 1 10.5343 -10.5454 2.3532 47 1 8.3067 -10.1172 1.3925 48 1 7.2920 -7.8862 1.5860 49 1 5.4008 -1.9968 1.6650 50 1 6.0156 -1.4588 0.0809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999894794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:49 Heat of formation + Delta-G solvation = -39.293544 kcal Electronic energy + Delta-G solvation = -30339.599982 eV Core-core repulsion = 26331.786695 eV Total energy + Delta-G solvation = -4007.813286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20363 -40.02349 -37.75154 -37.61926 -35.33482 -34.68843 -32.29084 -31.45768 -30.97499 -30.54952 -29.86044 -28.47849 -25.51785 -24.52048 -23.96004 -23.39486 -22.32456 -21.97764 -20.30387 -19.99267 -18.87477 -18.18637 -17.68446 -17.35963 -16.72086 -16.25247 -15.72055 -15.59583 -15.16409 -14.74615 -14.62323 -14.25737 -14.20313 -14.01151 -13.84041 -13.71404 -13.55638 -13.35008 -13.01174 -12.87255 -12.78064 -12.74288 -12.45237 -12.08471 -11.81054 -11.62370 -11.37333 -11.17666 -11.13654 -11.04049 -10.95839 -10.73403 -10.56845 -10.54803 -10.44600 -10.12103 -9.71988 -9.62501 -9.07443 -8.97346 -8.52307 -8.41634 -7.33206 -5.80662 -3.17466 1.01892 1.15220 2.62512 2.97139 3.04682 3.35404 3.38197 3.43584 3.47997 4.18559 4.30932 4.41648 4.53426 4.55791 4.65246 4.80074 4.82263 4.90801 4.96329 4.99737 5.03996 5.09576 5.15712 5.21138 5.23779 5.30623 5.37145 5.45543 5.48042 5.50024 5.54823 5.62881 5.67798 5.70776 5.85485 5.87573 5.92470 5.99406 6.02277 6.06955 6.19641 6.25586 6.26486 6.40552 6.50432 6.54733 6.75006 6.90248 7.18816 7.45256 7.93825 8.19376 8.37611 9.15108 9.87534 10.06229 11.37359 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002305 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.018003 B =12144.608674 C =12902.705879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.058 0.942 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.106 3.894 15 N -0.605 5.605 16 C 0.513 3.487 17 O -0.541 6.541 18 C -0.131 4.131 19 C -0.029 4.029 20 H 0.096 0.904 21 C -0.157 4.157 22 C 0.063 3.937 23 O -0.319 6.319 24 C 0.135 3.865 25 C -0.152 4.152 26 C -0.090 4.090 27 C -0.153 4.153 28 C -0.085 4.085 29 C -0.153 4.153 30 C 0.103 3.897 31 H 0.260 0.740 32 H 0.361 0.639 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.093 0.907 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.604 -17.986 1.915 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.063 3.937 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.017 4.017 15 N -0.339 5.339 16 C 0.301 3.699 17 O -0.418 6.418 18 C -0.171 4.171 19 C -0.048 4.048 20 H 0.114 0.886 21 C -0.194 4.194 22 C -0.012 4.012 23 O -0.233 6.233 24 C 0.090 3.910 25 C -0.170 4.170 26 C -0.108 4.108 27 C -0.171 4.171 28 C -0.103 4.103 29 C -0.154 4.154 30 C -0.020 4.020 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.112 0.888 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 23.474 -17.730 2.563 29.528 hybrid contribution 0.203 1.328 -0.289 1.374 sum 23.677 -16.402 2.273 28.893 Atomic orbital electron populations 1.69697 1.05106 1.25898 1.57255 1.24671 0.95241 0.97238 1.01857 0.86552 0.79293 0.84965 0.77745 1.21072 1.21680 1.20255 1.19025 0.80278 0.94731 1.43330 0.89187 1.42675 1.04103 1.01712 1.90290 1.20447 0.90051 0.89656 0.93564 0.92379 1.22246 1.00653 0.94775 1.00160 1.22004 0.95160 0.99367 1.00658 1.21898 0.98134 0.98058 0.83620 1.48102 1.52109 1.25892 1.07749 1.20545 0.79408 0.86004 0.83900 1.90678 1.61035 1.64339 1.25789 1.21804 1.00065 0.96273 0.98931 1.19770 0.97120 0.90313 0.97598 0.88641 1.22368 0.97664 1.00359 0.99048 1.23011 0.96248 0.85647 0.96323 1.85976 1.37306 1.28235 1.71810 1.18708 0.90630 0.88336 0.93304 1.20600 1.01744 0.90413 1.04289 1.20925 0.94727 0.98444 0.96662 1.21035 0.96298 0.97177 1.02597 1.20990 0.99453 0.92300 0.97546 1.19835 0.95419 0.96674 1.03447 1.21999 0.92140 0.84542 1.03308 0.92996 0.80599 0.91040 0.92576 0.91623 0.91164 0.91320 0.90134 0.88834 0.88285 0.88046 0.90887 0.87428 0.91587 0.85390 0.85549 0.85852 0.85606 0.88820 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.93 27.74 -169.99 -4.71 17.22 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.75 -17.24 4.93 -53.30 -0.26 -17.51 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 12 C -0.14 -2.18 5.46 -26.69 -0.15 -2.33 16 13 C -0.13 -1.53 6.10 -26.38 -0.16 -1.69 16 14 C 0.11 1.06 6.33 -3.49 -0.02 1.04 16 15 N -0.61 -7.95 2.97 -172.51 -0.51 -8.46 16 16 C 0.51 6.77 7.38 -10.99 -0.08 6.69 16 17 O -0.54 -8.98 13.71 5.55 0.08 -8.91 16 18 C -0.13 -1.23 3.22 -27.88 -0.09 -1.32 16 19 C -0.03 -0.30 2.02 -91.70 -0.18 -0.48 16 20 H 0.10 1.09 7.82 -51.93 -0.41 0.69 16 21 C -0.16 -1.54 5.08 -26.48 -0.13 -1.67 16 22 C 0.06 0.56 7.03 37.37 0.26 0.82 16 23 O -0.32 -3.40 10.27 -19.24 -0.20 -3.60 16 24 C 0.14 1.41 6.47 -39.20 -0.25 1.16 16 25 C -0.15 -1.37 9.94 -39.34 -0.39 -1.76 16 26 C -0.09 -0.68 10.04 -39.67 -0.40 -1.08 16 27 C -0.15 -1.18 10.04 -39.61 -0.40 -1.58 16 28 C -0.08 -0.73 9.08 -39.53 -0.36 -1.09 16 29 C -0.15 -1.50 5.43 -104.44 -0.57 -2.07 16 30 C 0.10 1.67 5.90 -3.71 -0.02 1.65 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.59 5.95 -51.93 -0.31 0.28 16 39 H 0.09 0.75 7.57 -51.93 -0.39 0.36 16 40 H 0.10 0.78 6.06 -51.93 -0.31 0.47 16 41 H 0.10 1.14 6.58 -51.93 -0.34 0.80 16 42 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 48 H 0.13 0.89 6.37 -52.49 -0.33 0.56 16 49 H 0.09 1.72 7.00 -51.93 -0.36 1.36 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 387.51 15.07 5.84 5.84 Total: -1.00 -33.27 387.51 -10.17 -43.44 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.77 Total: 7.81 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.40 Total: -7.54 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.00 Total: -54.27 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.12 Total: -12.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.27 -10.17 -43.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.147 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds