Wall clock time and date at job start Wed Apr 1 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00211 * 2 1 4 4 H 1.48499 * 109.47186 * 270.00075 * 3 2 1 5 5 H 1.48500 * 109.47090 * 29.99833 * 3 2 1 6 6 H 1.48498 * 109.47331 * 150.00189 * 3 2 1 7 7 C 1.38810 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00158 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00073 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00093 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49633 * 325.06198 * 10 9 7 12 12 C 1.53040 * 109.50172 * 85.16080 * 10 9 7 13 13 C 1.53039 * 109.54286 * 181.31855 * 12 10 9 14 14 C 1.53628 * 109.23750 * 298.51192 * 13 12 10 15 15 N 1.46919 * 108.54448 * 54.85590 * 14 13 12 16 16 C 1.34776 * 120.63015 * 126.36831 * 15 14 13 17 17 O 1.21287 * 120.00077 * 179.72333 * 16 15 14 18 18 C 1.50697 * 120.00014 * 359.71721 * 16 15 14 19 19 C 1.53003 * 109.47154 * 173.97685 * 18 16 15 20 20 H 1.09000 * 109.39898 * 53.88669 * 19 18 16 21 21 C 1.53071 * 109.43919 * 293.99209 * 19 18 16 22 22 C 1.53405 * 108.29909 * 191.72632 * 21 19 18 23 23 O 1.42834 * 108.38027 * 64.70561 * 22 21 19 24 24 C 1.35841 * 117.85726 * 310.81538 * 23 22 21 25 25 C 1.39152 * 118.49711 * 196.98282 * 24 23 22 26 26 C 1.37964 * 120.21508 * 180.43910 * 25 24 23 27 27 C 1.38281 * 119.95935 * 359.97320 * 26 25 24 28 28 C 1.38108 * 119.98675 * 359.92348 * 27 26 25 29 29 C 1.38365 * 121.80705 * 17.24410 * 24 23 22 30 30 C 1.46927 * 118.74150 * 306.09300 * 15 14 13 31 31 H 0.97006 * 120.00076 * 0.02562 * 1 2 3 32 32 H 0.96998 * 120.00162 * 0.02562 * 9 7 2 33 33 H 1.08998 * 109.45750 * 301.34051 * 12 10 9 34 34 H 1.08997 * 109.45678 * 61.29095 * 12 10 9 35 35 H 1.09001 * 109.49579 * 58.58432 * 13 12 10 36 36 H 1.09002 * 109.49983 * 178.65366 * 13 12 10 37 37 H 1.09001 * 109.73552 * 295.11459 * 14 13 12 38 38 H 1.09001 * 109.66127 * 174.55087 * 14 13 12 39 39 H 1.09001 * 109.47218 * 53.98013 * 18 16 15 40 40 H 1.09000 * 109.47137 * 293.97453 * 18 16 15 41 41 H 1.08992 * 109.69865 * 72.02265 * 21 19 18 42 42 H 1.08998 * 109.69640 * 311.42543 * 21 19 18 43 43 H 1.09002 * 109.68133 * 184.42452 * 22 21 19 44 44 H 1.08998 * 109.68526 * 304.98503 * 22 21 19 45 45 H 1.07999 * 119.88715 * 0.42866 * 25 24 23 46 46 H 1.08004 * 120.01780 * 179.97438 * 26 25 24 47 47 H 1.08007 * 120.01168 * 179.89658 * 27 26 25 48 48 H 1.07997 * 119.84622 * 180.02562 * 28 27 26 49 49 H 1.08992 * 109.58910 * 173.65013 * 30 15 14 50 50 H 1.09004 * 109.58639 * 294.07588 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5642 -3.2073 0.5892 12 6 4.2627 -2.9739 -1.4364 13 6 4.9990 -4.3155 -1.4349 14 6 6.4026 -4.1219 -0.8412 15 7 6.2677 -3.5065 0.4861 16 6 6.8412 -4.0719 1.5667 17 8 6.7268 -3.5514 2.6562 18 6 7.6246 -5.3511 1.4213 19 6 8.2901 -5.6960 2.7552 20 1 7.5356 -5.7165 3.5416 21 6 9.3438 -4.6366 3.0877 22 6 10.1914 -5.1512 4.2582 23 8 10.9019 -6.3117 3.8238 24 6 10.1988 -7.2863 3.1905 25 6 10.7682 -8.5512 3.0809 26 6 10.0892 -9.5649 2.4368 27 6 8.8384 -9.3247 1.8983 28 6 8.2692 -8.0711 2.0070 29 6 8.9457 -7.0498 2.6536 30 6 5.5009 -2.2595 0.6120 31 1 -0.4850 0.8401 -0.0004 32 1 3.8646 -0.3622 0.0014 33 1 3.2760 -3.1016 -1.8817 34 1 4.8316 -2.2480 -2.0173 35 1 4.4430 -5.0349 -0.8336 36 1 5.0848 -4.6847 -2.4569 37 1 6.9893 -3.4700 -1.4884 38 1 6.8976 -5.0885 -0.7472 39 1 8.3899 -5.2235 0.6558 40 1 6.9518 -6.1582 1.1316 41 1 8.8524 -3.7060 3.3712 42 1 9.9807 -4.4668 2.2196 43 1 10.8991 -4.3812 4.5654 44 1 9.5430 -5.4097 5.0953 45 1 11.7450 -8.7400 3.5013 46 1 10.5343 -10.5454 2.3532 47 1 8.3067 -10.1172 1.3925 48 1 7.2920 -7.8862 1.5860 49 1 5.4008 -1.9968 1.6650 50 1 6.0156 -1.4588 0.0809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999894794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:48 Heat of formation + Delta-G solvation = -59.671058 kcal Electronic energy + Delta-G solvation = -30340.483617 eV Core-core repulsion = 26331.786695 eV Total energy + Delta-G solvation = -4008.696922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.96418 -41.03420 -38.86191 -38.39482 -36.32978 -36.13470 -33.95818 -32.90929 -31.68831 -31.27178 -30.98271 -29.67900 -26.53652 -25.78902 -24.98004 -24.40564 -23.34433 -23.06221 -21.55975 -20.85780 -20.09898 -19.49062 -18.89278 -18.25903 -17.45708 -17.16705 -16.74668 -16.70581 -16.33291 -16.04703 -15.73873 -15.33860 -15.22269 -15.06155 -14.89077 -14.79951 -14.64790 -14.31117 -14.12618 -14.02242 -13.90073 -13.84532 -13.45967 -13.08277 -12.96169 -12.73686 -12.56284 -12.46132 -12.26776 -12.14069 -12.01273 -11.90574 -11.82460 -11.76931 -11.69308 -11.64654 -11.25019 -10.96497 -10.76675 -9.71892 -9.68590 -9.32852 -9.08663 -8.05173 -5.39764 0.39175 0.51358 1.36069 1.39597 1.46624 1.61176 1.94480 2.37275 2.45966 2.84662 3.25846 3.37597 3.54599 3.60645 3.69239 3.83215 3.87707 3.97490 4.09322 4.10152 4.19370 4.21268 4.27630 4.30129 4.33217 4.34145 4.45450 4.53412 4.57538 4.63335 4.69408 4.74929 4.80224 4.82331 4.84584 4.88712 5.04696 5.07699 5.11872 5.16235 5.17551 5.39262 5.41088 5.46965 5.52573 5.57217 5.65158 5.74123 5.91914 6.18036 6.44412 6.50132 7.03370 7.16914 7.78109 7.97685 9.16167 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002305 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.018003 B =12144.608674 C =12902.705879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.229 4.229 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.169 3.831 11 H 0.030 0.970 12 C -0.131 4.131 13 C -0.125 4.125 14 C 0.104 3.896 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.582 6.582 18 C -0.120 4.120 19 C -0.027 4.027 20 H 0.073 0.927 21 C -0.152 4.152 22 C 0.061 3.939 23 O -0.332 6.332 24 C 0.111 3.889 25 C -0.164 4.164 26 C -0.088 4.088 27 C -0.153 4.153 28 C -0.091 4.091 29 C -0.163 4.163 30 C 0.115 3.885 31 H 0.258 0.742 32 H 0.366 0.634 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.062 0.938 45 H 0.135 0.865 46 H 0.152 0.848 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.065 0.935 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.715 -19.571 0.261 33.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.359 4.359 8 H 0.072 0.928 9 N -0.394 5.394 10 C 0.061 3.939 11 H 0.048 0.952 12 C -0.171 4.171 13 C -0.164 4.164 14 C -0.017 4.017 15 N -0.338 5.338 16 C 0.299 3.701 17 O -0.463 6.463 18 C -0.159 4.159 19 C -0.046 4.046 20 H 0.091 0.909 21 C -0.190 4.190 22 C -0.013 4.013 23 O -0.246 6.246 24 C 0.066 3.934 25 C -0.182 4.182 26 C -0.106 4.106 27 C -0.171 4.171 28 C -0.109 4.109 29 C -0.164 4.164 30 C -0.009 4.009 31 H 0.067 0.933 32 H 0.199 0.801 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.153 0.847 46 H 0.170 0.830 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.084 0.916 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 26.648 -19.372 0.883 32.957 hybrid contribution -0.789 1.654 0.259 1.850 sum 25.859 -17.718 1.141 31.367 Atomic orbital electron populations 1.69883 1.07134 1.26721 1.59595 1.25512 0.96143 1.01306 1.02586 0.85396 0.78543 0.79508 0.78248 1.19966 1.22396 1.17850 1.18936 0.82352 0.93307 1.41354 0.92830 1.42663 1.02560 1.03694 1.90446 1.20623 0.90705 0.87150 0.95454 0.95206 1.22069 1.00017 0.97773 0.97212 1.21968 0.95431 0.96228 1.02746 1.22195 0.97453 1.00228 0.81833 1.48190 1.51384 1.24928 1.09341 1.21263 0.79027 0.86714 0.83086 1.90670 1.62488 1.65595 1.27500 1.21818 1.00409 0.94409 0.99253 1.19676 0.96626 0.90872 0.97379 0.90870 1.22282 0.97645 0.99542 0.99506 1.23088 0.96594 0.85771 0.95874 1.85955 1.37866 1.28657 1.72139 1.19013 0.91295 0.88878 0.94202 1.20853 1.02345 0.90355 1.04688 1.21276 0.94671 0.99136 0.95507 1.21377 0.96313 0.97419 1.02013 1.21229 0.99986 0.92353 0.97308 1.19829 0.95487 0.96712 1.04339 1.21594 0.91141 0.86755 1.01413 0.93305 0.80079 0.94067 0.91610 0.92180 0.88009 0.89406 0.86306 0.86345 0.86056 0.89876 0.90427 0.85706 0.92007 0.84702 0.83025 0.83508 0.84098 0.91595 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.53 13.97 21.65 0.30 -63.22 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 45.77 27.74 68.60 1.90 47.68 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 7 C -0.23 -13.13 10.41 84.03 0.88 -12.25 16 8 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 9 N -0.75 -35.07 4.93 -322.56 -1.59 -36.66 16 10 C 0.17 6.36 2.92 45.07 0.13 6.50 16 11 H 0.03 1.28 8.08 -2.38 -0.02 1.26 16 12 C -0.13 -3.99 5.46 30.62 0.17 -3.83 16 13 C -0.13 -2.48 6.10 30.82 0.19 -2.29 16 14 C 0.10 1.64 6.33 86.51 0.55 2.19 16 15 N -0.61 -14.65 2.97 -818.07 -2.43 -17.08 16 16 C 0.51 12.71 7.38 87.66 0.65 13.35 16 17 O -0.58 -19.59 13.71 -3.05 -0.04 -19.63 16 18 C -0.12 -1.92 3.22 29.85 0.10 -1.82 16 19 C -0.03 -0.51 2.02 -11.49 -0.02 -0.53 16 20 H 0.07 1.71 7.82 -2.39 -0.02 1.69 16 21 C -0.15 -2.92 5.08 30.75 0.16 -2.76 16 22 C 0.06 1.08 7.03 72.12 0.51 1.59 16 23 O -0.33 -6.88 10.27 -91.76 -0.94 -7.82 16 24 C 0.11 2.19 6.47 22.52 0.15 2.33 16 25 C -0.16 -2.68 9.94 22.42 0.22 -2.45 16 26 C -0.09 -1.09 10.04 22.22 0.22 -0.87 16 27 C -0.15 -1.85 10.04 22.25 0.22 -1.63 16 28 C -0.09 -1.30 9.08 22.30 0.20 -1.09 16 29 C -0.16 -2.93 5.43 -19.75 -0.11 -3.04 16 30 C 0.12 3.66 5.90 86.36 0.51 4.17 16 31 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 32 H 0.37 16.33 5.66 -92.71 -0.52 15.81 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.12 1.05 5.95 -2.39 -0.01 1.03 16 39 H 0.12 1.37 7.57 -2.39 -0.02 1.35 16 40 H 0.12 1.43 6.06 -2.39 -0.01 1.42 16 41 H 0.08 1.91 6.58 -2.39 -0.02 1.89 16 42 H 0.08 1.39 8.06 -2.39 -0.02 1.37 16 43 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 47 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 48 H 0.14 1.49 6.37 -2.91 -0.02 1.47 16 49 H 0.07 2.47 7.00 -2.39 -0.02 2.45 16 50 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 Total: -1.00 -77.09 387.51 2.75 -74.34 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.36 Total: 28.18 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 5.18 Total: -5.78 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -3.71 Total: -116.96 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.98 Total: -27.46 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.90 Total: 47.68 kcal Total: -77.09 2.75 -74.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999894794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.669 kcal (2) G-P(sol) polarization free energy of solvation -77.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds