Wall clock time and date at job start Wed Apr 1 2020 02:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48503 * 109.46737 * 270.00414 * 3 2 1 5 5 H 1.48500 * 109.46711 * 29.99945 * 3 2 1 6 6 H 1.48494 * 109.46996 * 150.00095 * 3 2 1 7 7 C 1.38813 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00011 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99993 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.52424 * 325.08395 * 10 9 7 12 12 C 1.53070 * 109.62217 * 85.10793 * 10 9 7 13 13 C 1.53039 * 109.65812 * 181.16721 * 12 10 9 14 14 C 1.53191 * 109.31416 * 298.69913 * 13 12 10 15 15 N 1.46928 * 108.77343 * 54.63452 * 14 13 12 16 16 C 1.34783 * 120.62874 * 126.37163 * 15 14 13 17 17 O 1.21274 * 119.99655 * 180.02562 * 16 15 14 18 18 C 1.50698 * 119.99922 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47009 * 180.02562 * 18 16 15 20 20 H 1.09000 * 109.33606 * 305.31944 * 19 18 16 21 21 O 1.42722 * 109.34654 * 64.99585 * 19 18 16 22 22 C 1.43214 * 113.12703 * 172.01306 * 21 19 18 23 23 C 1.52969 * 108.47687 * 289.29148 * 22 21 19 24 24 C 1.50748 * 109.76781 * 49.15730 * 23 22 21 25 25 C 1.38594 * 118.76347 * 163.19447 * 24 23 22 26 26 C 1.38072 * 120.27828 * 179.79980 * 25 24 23 27 27 C 1.38261 * 119.85863 * 359.97438 * 26 25 24 28 28 C 1.38053 * 119.90004 * 0.09957 * 27 26 25 29 29 C 1.37911 * 121.35274 * 343.14001 * 24 23 22 30 30 C 1.46919 * 118.73982 * 306.39079 * 15 14 13 31 31 H 0.96998 * 120.00214 * 359.97438 * 1 2 3 32 32 H 0.97005 * 119.99665 * 0.02562 * 9 7 2 33 33 H 1.09007 * 109.35101 * 61.14474 * 12 10 9 34 34 H 1.09000 * 109.44413 * 301.25018 * 12 10 9 35 35 H 1.09002 * 109.49876 * 178.74890 * 13 12 10 36 36 H 1.09005 * 109.52615 * 58.67140 * 13 12 10 37 37 H 1.08998 * 109.58966 * 294.84519 * 14 13 12 38 38 H 1.09007 * 109.70227 * 174.48874 * 14 13 12 39 39 H 1.09001 * 109.47385 * 300.00399 * 18 16 15 40 40 H 1.08997 * 109.47457 * 60.00250 * 18 16 15 41 41 H 1.08999 * 109.63293 * 48.98301 * 22 21 19 42 42 H 1.08994 * 109.63653 * 169.59312 * 22 21 19 43 43 H 1.09000 * 109.42448 * 169.24683 * 23 22 21 44 44 H 1.08998 * 109.42423 * 289.12514 * 23 22 21 45 45 H 1.08002 * 119.86611 * 359.79437 * 25 24 23 46 46 H 1.07998 * 120.06902 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.05038 * 180.02562 * 27 26 25 48 48 H 1.07995 * 119.85123 * 180.02562 * 28 27 26 49 49 H 1.09002 * 109.58751 * 173.39743 * 30 15 14 50 50 H 1.08996 * 109.58750 * 293.67928 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5648 -3.2075 0.5884 12 6 4.2619 -2.9780 -1.4365 13 6 5.0015 -4.3178 -1.4350 14 6 6.4008 -4.1235 -0.8425 15 7 6.2709 -3.5045 0.4836 16 6 6.8466 -4.0684 1.5640 17 8 6.7317 -3.5478 2.6533 18 6 7.6330 -5.3456 1.4183 19 6 8.1754 -5.7692 2.7848 20 1 8.7464 -4.9475 3.2170 21 8 7.0848 -6.0918 3.6471 22 6 7.5017 -6.6720 4.8883 23 6 8.0278 -8.0816 4.6120 24 6 9.0115 -8.0439 3.4703 25 6 9.8611 -9.1233 3.2862 26 6 10.7714 -9.1236 2.2481 27 6 10.8352 -8.0427 1.3883 28 6 9.9903 -6.9665 1.5718 29 6 9.0772 -6.9641 2.6151 30 6 5.5013 -2.2593 0.6097 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 -0.0004 33 1 4.8284 -2.2512 -2.0187 34 1 3.2749 -3.1086 -1.8801 35 1 5.0873 -4.6872 -2.4570 36 1 4.4483 -5.0387 -0.8329 37 1 6.9862 -3.4740 -1.4932 38 1 6.8971 -5.0894 -0.7479 39 1 6.9842 -6.1291 1.0265 40 1 8.4637 -5.1846 0.7313 41 1 8.2931 -6.0655 5.3286 42 1 6.6537 -6.7249 5.5710 43 1 8.5226 -8.4652 5.5042 44 1 7.1951 -8.7345 4.3504 45 1 9.8111 -9.9678 3.9576 46 1 11.4322 -9.9662 2.1080 47 1 11.5458 -8.0398 0.5749 48 1 10.0405 -6.1228 0.8995 49 1 5.4020 -1.9962 1.6628 50 1 6.0147 -1.4572 0.0796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000733186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:21 Heat of formation + Delta-G solvation = -40.765742 kcal Electronic energy + Delta-G solvation = -30376.306255 eV Core-core repulsion = 26368.429130 eV Total energy + Delta-G solvation = -4007.877126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.86839 -39.81417 -37.85483 -37.21028 -34.62363 -34.01779 -32.54797 -32.13748 -31.39376 -30.37941 -29.28290 -28.26870 -25.43681 -24.43783 -24.06446 -23.40693 -22.09530 -21.87368 -20.35922 -20.04829 -18.85162 -17.73033 -17.61633 -16.97036 -16.49685 -16.22948 -15.72287 -15.40676 -15.14718 -14.66569 -14.58147 -14.27587 -14.14553 -13.98852 -13.81646 -13.62292 -13.45511 -13.23220 -12.98122 -12.73852 -12.69200 -12.50169 -12.37484 -12.27537 -12.02507 -11.67210 -11.39103 -11.17119 -11.07050 -10.98930 -10.84909 -10.64691 -10.49416 -10.36606 -10.06785 -9.81412 -9.61646 -9.56427 -9.11513 -8.93654 -8.91637 -8.41381 -7.27632 -5.75814 -3.12193 0.95553 1.00595 2.77079 3.06815 3.35786 3.39321 3.42460 3.47225 3.59576 4.21716 4.29902 4.44721 4.56001 4.60379 4.67565 4.74347 4.78114 4.88227 4.95171 5.02200 5.05292 5.12680 5.19644 5.20327 5.28137 5.31206 5.41645 5.48226 5.50598 5.55650 5.59434 5.62886 5.66717 5.68973 5.74798 5.75613 5.95054 6.07658 6.08272 6.14042 6.14685 6.23227 6.34544 6.48043 6.61952 6.64478 6.82795 6.97422 7.00357 7.56394 7.99523 8.34228 8.42685 9.20419 9.92804 10.11834 11.42335 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020503 B = 0.002337 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.302636 B =11976.176333 C =12575.527435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.608 5.608 16 C 0.515 3.485 17 O -0.528 6.528 18 C -0.131 4.131 19 C 0.148 3.852 20 H 0.079 0.921 21 O -0.354 6.354 22 C 0.060 3.940 23 C -0.118 4.118 24 C -0.069 4.069 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.113 4.113 30 C 0.105 3.895 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.989 -19.799 2.717 31.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.016 4.016 15 N -0.343 5.343 16 C 0.303 3.697 17 O -0.404 6.404 18 C -0.171 4.171 19 C 0.089 3.911 20 H 0.097 0.903 21 O -0.272 6.272 22 C -0.017 4.017 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.113 4.113 30 C -0.018 4.018 31 H 0.070 0.930 32 H 0.194 0.806 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.111 0.889 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 24.461 -19.525 3.282 31.469 hybrid contribution 0.814 1.018 -0.202 1.319 sum 25.275 -18.507 3.080 31.477 Atomic orbital electron populations 1.69698 1.05096 1.25837 1.57439 1.24669 0.95241 0.97214 1.01962 0.86549 0.79327 0.84982 0.77707 1.21111 1.21720 1.20222 1.19037 0.80312 0.94737 1.43081 0.89176 1.42672 1.04089 1.01734 1.90267 1.20449 0.90143 0.89602 0.93564 0.92339 1.22239 1.00577 0.94766 1.00183 1.21925 0.95328 0.99388 1.00604 1.21778 0.98136 0.97891 0.83780 1.48076 1.52424 1.26032 1.07718 1.20351 0.79813 0.85634 0.83925 1.90718 1.60473 1.63672 1.25550 1.21820 1.01295 0.96922 0.97037 1.20522 0.87037 0.92937 0.90578 0.90316 1.88202 1.29914 1.81300 1.27756 1.22591 1.00587 0.91697 0.86826 1.21194 0.98127 0.99569 0.96598 1.19542 0.96910 0.93771 0.96702 1.21083 0.96071 0.97947 0.98600 1.21127 0.98708 0.98515 0.95262 1.21104 0.99307 0.93989 0.99625 1.21084 0.95592 0.98866 0.97370 1.20265 0.98276 0.96454 0.96310 1.21956 0.92032 0.84560 1.03292 0.93047 0.80617 0.92624 0.91106 0.91216 0.91606 0.91432 0.90286 0.87810 0.87568 0.92673 0.88130 0.89764 0.89535 0.85992 0.86003 0.85862 0.85682 0.88872 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.85 10.41 -15.06 -0.16 -7.01 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.72 4.93 -53.29 -0.26 -17.99 16 10 C 0.17 3.37 2.93 -67.79 -0.20 3.17 16 11 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 12 C -0.14 -2.26 5.47 -26.67 -0.15 -2.41 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.11 1.14 6.34 -3.71 -0.02 1.12 16 15 N -0.61 -8.62 2.97 -172.77 -0.51 -9.13 16 16 C 0.52 7.59 7.58 -10.98 -0.08 7.51 16 17 O -0.53 -9.94 14.82 -8.97 -0.13 -10.07 16 18 C -0.13 -1.38 3.46 -27.88 -0.10 -1.47 16 19 C 0.15 1.68 2.27 -27.91 -0.06 1.62 16 20 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 21 O -0.35 -4.74 9.66 -49.77 -0.48 -5.22 16 22 C 0.06 0.59 6.85 37.14 0.25 0.85 16 23 C -0.12 -0.95 6.00 -27.88 -0.17 -1.12 16 24 C -0.07 -0.64 5.78 -104.59 -0.60 -1.24 16 25 C -0.12 -0.93 9.67 -39.51 -0.38 -1.31 16 26 C -0.12 -0.84 10.05 -39.63 -0.40 -1.24 16 27 C -0.12 -0.88 10.05 -39.64 -0.40 -1.28 16 28 C -0.11 -0.90 9.08 -39.50 -0.36 -1.26 16 29 C -0.11 -1.10 5.46 -104.62 -0.57 -1.67 16 30 C 0.10 1.79 5.90 -3.71 -0.02 1.77 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.62 5.93 -51.92 -0.31 0.31 16 39 H 0.10 1.03 7.69 -51.93 -0.40 0.63 16 40 H 0.11 0.79 6.09 -51.93 -0.32 0.47 16 41 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 48 H 0.13 0.78 6.45 -52.49 -0.34 0.44 16 49 H 0.09 1.82 7.00 -51.93 -0.36 1.46 16 50 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 390.45 15.07 5.88 5.88 Total: -1.00 -35.24 390.45 -10.99 -46.23 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -7.87 Total: 7.16 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.67 Total: -5.71 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.00 Total: -55.84 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.61 Total: -15.29 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.24 -10.99 -46.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000733186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.468 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds