Wall clock time and date at job start Wed Apr 1 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.49808 * 34.99815 * 10 9 7 12 12 C 1.53041 * 109.49829 * 274.93513 * 10 9 7 13 13 C 1.53040 * 109.53868 * 178.67771 * 12 10 9 14 14 C 1.53194 * 109.31077 * 61.36813 * 13 12 10 15 15 N 1.46925 * 108.77472 * 305.36112 * 14 13 12 16 16 C 1.34770 * 120.63108 * 233.60909 * 15 14 13 17 17 O 1.21284 * 120.00073 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00208 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47407 * 179.97438 * 18 16 15 20 20 H 1.09006 * 109.33829 * 304.68051 * 19 18 16 21 21 O 1.42726 * 109.33692 * 64.18874 * 19 18 16 22 22 C 1.43212 * 113.14130 * 172.00368 * 21 19 18 23 23 C 1.52972 * 108.47868 * 289.33885 * 22 21 19 24 24 C 1.50748 * 109.75981 * 49.23009 * 23 22 21 25 25 C 1.38594 * 118.76302 * 163.20894 * 24 23 22 26 26 C 1.38072 * 120.27735 * 179.51905 * 25 24 23 27 27 C 1.38261 * 119.85632 * 0.02562 * 26 25 24 28 28 C 1.38049 * 119.90118 * 0.08118 * 27 26 25 29 29 C 1.37903 * 121.34935 * 342.91163 * 24 23 22 30 30 C 1.46935 * 118.76263 * 53.58994 * 15 14 13 31 31 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46198 * 298.70557 * 12 10 9 34 34 H 1.09004 * 109.46142 * 58.66213 * 12 10 9 35 35 H 1.09005 * 109.49670 * 181.31706 * 13 12 10 36 36 H 1.08996 * 109.50389 * 301.41314 * 13 12 10 37 37 H 1.08999 * 109.58640 * 65.15032 * 14 13 12 38 38 H 1.09000 * 109.58528 * 185.57655 * 14 13 12 39 39 H 1.08999 * 109.47009 * 300.00360 * 18 16 15 40 40 H 1.08995 * 109.46798 * 60.00199 * 18 16 15 41 41 H 1.09002 * 109.63333 * 169.64401 * 22 21 19 42 42 H 1.08998 * 109.80283 * 49.13941 * 22 21 19 43 43 H 1.09001 * 109.42554 * 289.13712 * 23 22 21 44 44 H 1.09001 * 109.36922 * 169.27977 * 23 22 21 45 45 H 1.08001 * 119.86128 * 359.52437 * 25 24 23 46 46 H 1.07990 * 120.06913 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04923 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.85000 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.61345 * 186.63964 * 30 15 14 50 50 H 1.08998 * 109.56053 * 66.21419 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9688 -3.5511 0.5899 12 6 2.4208 -4.0372 -1.4368 13 6 3.2145 -5.3456 -1.4351 14 6 2.3489 -6.4625 -0.8433 15 7 1.8759 -6.0420 0.4827 16 6 2.0773 -6.8223 1.5628 17 8 1.6817 -6.4642 2.6520 18 6 2.7931 -8.1405 1.4173 19 6 2.8892 -8.8223 2.7835 20 1 3.3694 -8.1465 3.4912 21 8 1.5767 -9.1345 3.2493 22 6 1.5765 -9.9368 4.4356 23 6 2.0544 -11.3432 4.0699 24 6 3.3250 -11.2560 3.2633 25 6 4.1097 -12.3906 3.1303 26 6 5.2746 -12.3485 2.3903 27 6 5.6601 -11.1694 1.7799 28 6 4.8802 -10.0382 1.9138 29 6 3.7109 -10.0787 2.6575 30 6 1.1796 -4.7543 0.6093 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 1.5087 -4.1663 -2.0195 34 1 3.0257 -3.2461 -1.8801 35 1 3.4927 -5.6037 -2.4570 36 1 4.1144 -5.2246 -0.8322 37 1 1.4944 -6.6466 -1.4946 38 1 2.9413 -7.3725 -0.7483 39 1 2.2400 -8.7803 0.7296 40 1 3.7958 -7.9682 1.0263 41 1 0.5668 -9.9876 4.8432 42 1 2.2487 -9.5023 5.1754 43 1 1.2860 -11.8459 3.4826 44 1 2.2423 -11.9097 4.9819 45 1 3.8086 -13.3116 3.6073 46 1 5.8833 -13.2348 2.2885 47 1 6.5705 -11.1331 1.2000 48 1 5.1823 -9.1174 1.4370 49 1 1.0008 -4.5371 1.6624 50 1 0.2295 -4.7993 0.0770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000733187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:24 Heat of formation + Delta-G solvation = -45.012284 kcal Electronic energy + Delta-G solvation = -30277.387067 eV Core-core repulsion = 26269.325797 eV Total energy + Delta-G solvation = -4008.061270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83438 -39.73866 -37.81691 -37.11847 -34.47318 -33.98251 -32.52770 -32.10613 -31.24399 -30.29656 -29.05870 -27.95328 -25.36473 -24.42020 -24.06021 -23.50877 -22.03419 -22.00342 -20.33560 -19.97997 -18.73487 -17.67491 -17.16616 -16.94969 -16.45894 -16.16340 -15.67808 -15.36636 -15.10159 -14.71983 -14.48303 -14.30036 -14.02913 -13.88412 -13.74442 -13.51460 -13.46426 -13.16230 -12.90567 -12.84601 -12.64827 -12.49717 -12.25548 -12.16343 -11.97453 -11.60911 -11.25391 -11.03241 -10.90818 -10.87971 -10.83706 -10.62919 -10.38825 -10.32174 -10.08171 -9.79801 -9.70632 -9.49042 -9.08864 -8.91196 -8.88980 -8.32122 -6.96943 -5.75871 -3.05399 0.98039 1.03083 2.85323 3.14600 3.38259 3.44928 3.49403 3.50393 3.61378 4.25284 4.31744 4.47265 4.58556 4.60168 4.72365 4.77743 4.80485 4.96525 4.96964 5.04735 5.09462 5.17367 5.21562 5.23014 5.32977 5.36151 5.51055 5.55131 5.59719 5.60528 5.65495 5.69348 5.73801 5.76841 5.78924 5.85830 6.06956 6.10625 6.17427 6.20267 6.25405 6.28334 6.41911 6.57980 6.64502 6.75714 6.91267 7.01653 7.07434 7.65719 7.70050 8.40665 8.43830 9.53117 10.08995 10.44055 11.46557 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.002224 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.290906 B =12588.162465 C =13194.122252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.108 3.892 15 N -0.608 5.608 16 C 0.514 3.486 17 O -0.529 6.529 18 C -0.131 4.131 19 C 0.147 3.853 20 H 0.080 0.920 21 O -0.354 6.354 22 C 0.060 3.940 23 C -0.117 4.117 24 C -0.070 4.070 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.122 4.122 28 C -0.111 4.111 29 C -0.112 4.112 30 C 0.107 3.893 31 H 0.256 0.744 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.092 0.908 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -28.496 2.758 30.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.015 4.015 15 N -0.342 5.342 16 C 0.302 3.698 17 O -0.404 6.404 18 C -0.171 4.171 19 C 0.089 3.911 20 H 0.098 0.902 21 O -0.273 6.273 22 C -0.017 4.017 23 C -0.154 4.154 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.129 4.129 29 C -0.112 4.112 30 C -0.015 4.015 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.111 0.889 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.964 -28.064 3.276 29.642 hybrid contribution 0.512 0.734 -0.160 0.909 sum 9.475 -27.330 3.116 29.093 Atomic orbital electron populations 1.69657 1.05090 1.25814 1.57435 1.24752 0.95531 0.97693 1.02902 0.86260 0.78517 0.83533 0.77823 1.21686 1.21248 1.21296 1.19152 0.90911 0.83921 1.42988 0.91251 1.42305 1.05815 0.99530 1.88571 1.20475 0.94640 0.86019 0.93097 0.93297 1.22282 0.99588 0.95227 1.00695 1.21940 0.98796 0.96101 1.00395 1.21757 0.98320 0.97483 0.83974 1.48106 1.57918 1.20599 1.07598 1.20327 0.79954 0.85473 0.84078 1.90721 1.50584 1.73352 1.25791 1.21818 1.02560 0.95065 0.97608 1.20538 0.83694 0.91488 0.95376 0.90211 1.88183 1.25360 1.70781 1.42935 1.22577 1.02444 0.89024 0.87687 1.21186 0.95061 0.99336 0.99837 1.19529 0.96396 0.92919 0.98191 1.21073 0.95138 0.97726 0.99806 1.21124 0.96767 0.98103 0.97647 1.21111 0.99815 0.92989 1.00054 1.21107 0.94222 0.98894 0.98631 1.20262 0.96631 0.95582 0.98759 1.21966 0.94926 0.81364 1.03268 0.93422 0.78189 0.92487 0.91624 0.91392 0.91895 0.91401 0.90444 0.88041 0.87499 0.88248 0.92618 0.89633 0.89803 0.86034 0.86019 0.85831 0.85594 0.88939 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -18.17 5.12 -53.31 -0.27 -18.45 16 10 C 0.17 3.38 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.14 -2.34 5.47 -26.69 -0.15 -2.48 16 13 C -0.13 -1.65 6.08 -26.61 -0.16 -1.82 16 14 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 15 N -0.61 -9.07 2.97 -172.76 -0.51 -9.59 16 16 C 0.51 7.89 7.57 -10.99 -0.08 7.81 16 17 O -0.53 -10.29 14.79 -9.79 -0.14 -10.44 16 18 C -0.13 -1.43 3.44 -27.88 -0.10 -1.53 16 19 C 0.15 1.73 2.29 -27.91 -0.06 1.67 16 20 H 0.08 1.03 7.96 -51.93 -0.41 0.61 16 21 O -0.35 -4.72 9.60 -50.58 -0.49 -5.20 16 22 C 0.06 0.58 6.84 37.14 0.25 0.84 16 23 C -0.12 -0.93 6.00 -27.87 -0.17 -1.10 16 24 C -0.07 -0.65 5.78 -104.59 -0.60 -1.26 16 25 C -0.12 -0.94 9.67 -39.51 -0.38 -1.33 16 26 C -0.12 -0.87 10.05 -39.63 -0.40 -1.27 16 27 C -0.12 -0.92 10.05 -39.64 -0.40 -1.32 16 28 C -0.11 -0.95 9.08 -39.50 -0.36 -1.30 16 29 C -0.11 -1.12 5.47 -104.62 -0.57 -1.70 16 30 C 0.11 1.96 5.90 -3.71 -0.02 1.94 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.64 5.93 -51.93 -0.31 0.34 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 40 H 0.11 0.89 5.87 -51.93 -0.31 0.58 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 48 H 0.13 0.88 6.45 -52.49 -0.34 0.54 16 49 H 0.09 1.92 7.01 -51.93 -0.36 1.55 16 50 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -34.09 393.53 -11.37 -45.46 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.92 Total: 8.04 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.67 Total: -5.71 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.06 Total: -55.59 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.63 Total: -15.64 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.09 -11.37 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000733187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.443 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds