Wall clock time and date at job start Wed Apr 1 2020 02:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 119.99884 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99443 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99468 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00458 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.49808 * 34.99815 * 10 9 7 12 12 C 1.53041 * 109.49829 * 274.93513 * 10 9 7 13 13 C 1.53040 * 109.53868 * 178.67771 * 12 10 9 14 14 C 1.53194 * 109.31077 * 61.36813 * 13 12 10 15 15 N 1.46925 * 108.77472 * 305.36112 * 14 13 12 16 16 C 1.34770 * 120.63108 * 233.60909 * 15 14 13 17 17 O 1.21284 * 120.00073 * 180.02562 * 16 15 14 18 18 C 1.50703 * 120.00208 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47407 * 179.97438 * 18 16 15 20 20 H 1.09006 * 109.33829 * 304.68051 * 19 18 16 21 21 O 1.42726 * 109.33692 * 64.18874 * 19 18 16 22 22 C 1.43212 * 113.14130 * 172.00368 * 21 19 18 23 23 C 1.52972 * 108.47868 * 289.33885 * 22 21 19 24 24 C 1.50748 * 109.75981 * 49.23009 * 23 22 21 25 25 C 1.38594 * 118.76302 * 163.20894 * 24 23 22 26 26 C 1.38072 * 120.27735 * 179.51905 * 25 24 23 27 27 C 1.38261 * 119.85632 * 0.02562 * 26 25 24 28 28 C 1.38049 * 119.90118 * 0.08118 * 27 26 25 29 29 C 1.37903 * 121.34935 * 342.91163 * 24 23 22 30 30 C 1.46935 * 118.76263 * 53.58994 * 15 14 13 31 31 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00083 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46198 * 298.70557 * 12 10 9 34 34 H 1.09004 * 109.46142 * 58.66213 * 12 10 9 35 35 H 1.09005 * 109.49670 * 181.31706 * 13 12 10 36 36 H 1.08996 * 109.50389 * 301.41314 * 13 12 10 37 37 H 1.08999 * 109.58640 * 65.15032 * 14 13 12 38 38 H 1.09000 * 109.58528 * 185.57655 * 14 13 12 39 39 H 1.08999 * 109.47009 * 300.00360 * 18 16 15 40 40 H 1.08995 * 109.46798 * 60.00199 * 18 16 15 41 41 H 1.09002 * 109.63333 * 169.64401 * 22 21 19 42 42 H 1.08998 * 109.80283 * 49.13941 * 22 21 19 43 43 H 1.09001 * 109.42554 * 289.13712 * 23 22 21 44 44 H 1.09001 * 109.36922 * 169.27977 * 23 22 21 45 45 H 1.08001 * 119.86128 * 359.52437 * 25 24 23 46 46 H 1.07990 * 120.06913 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04923 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.85000 * 179.97438 * 28 27 26 49 49 H 1.08997 * 109.61345 * 186.63964 * 30 15 14 50 50 H 1.08998 * 109.56053 * 66.21419 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7464 -0.0006 5 1 3.1039 1.6964 1.2124 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9688 -3.5511 0.5899 12 6 2.4208 -4.0372 -1.4368 13 6 3.2145 -5.3456 -1.4351 14 6 2.3489 -6.4625 -0.8433 15 7 1.8759 -6.0420 0.4827 16 6 2.0773 -6.8223 1.5628 17 8 1.6817 -6.4642 2.6520 18 6 2.7931 -8.1405 1.4173 19 6 2.8892 -8.8223 2.7835 20 1 3.3694 -8.1465 3.4912 21 8 1.5767 -9.1345 3.2493 22 6 1.5765 -9.9368 4.4356 23 6 2.0544 -11.3432 4.0699 24 6 3.3250 -11.2560 3.2633 25 6 4.1097 -12.3906 3.1303 26 6 5.2746 -12.3485 2.3903 27 6 5.6601 -11.1694 1.7799 28 6 4.8802 -10.0382 1.9138 29 6 3.7109 -10.0787 2.6575 30 6 1.1796 -4.7543 0.6093 31 1 -0.4850 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0002 33 1 1.5087 -4.1663 -2.0195 34 1 3.0257 -3.2461 -1.8801 35 1 3.4927 -5.6037 -2.4570 36 1 4.1144 -5.2246 -0.8322 37 1 1.4944 -6.6466 -1.4946 38 1 2.9413 -7.3725 -0.7483 39 1 2.2400 -8.7803 0.7296 40 1 3.7958 -7.9682 1.0263 41 1 0.5668 -9.9876 4.8432 42 1 2.2487 -9.5023 5.1754 43 1 1.2860 -11.8459 3.4826 44 1 2.2423 -11.9097 4.9819 45 1 3.8086 -13.3116 3.6073 46 1 5.8833 -13.2348 2.2885 47 1 6.5705 -11.1331 1.2000 48 1 5.1823 -9.1174 1.4370 49 1 1.0008 -4.5371 1.6624 50 1 0.2295 -4.7993 0.0770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000733187.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:23 Heat of formation + Delta-G solvation = -65.413978 kcal Electronic energy + Delta-G solvation = -30278.271751 eV Core-core repulsion = 26269.325797 eV Total energy + Delta-G solvation = -4008.945953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.67908 -40.82722 -38.80496 -38.26250 -36.19034 -34.79579 -33.82649 -33.14643 -32.73446 -31.12943 -30.23347 -29.18826 -26.50106 -25.94095 -24.94272 -24.61678 -23.35886 -22.78927 -21.41669 -20.98481 -20.00195 -19.13873 -18.53222 -17.93932 -17.23458 -17.13750 -16.78835 -16.47870 -16.24698 -16.04143 -15.55003 -15.42446 -15.18329 -15.15543 -14.86378 -14.70092 -14.55900 -14.22740 -14.09251 -13.95278 -13.64821 -13.42055 -13.26538 -13.07522 -12.89404 -12.84068 -12.62855 -12.42090 -12.31769 -12.16901 -12.14575 -11.83625 -11.82364 -11.69803 -11.60926 -11.54016 -10.90620 -10.81261 -10.54410 -9.68899 -9.63398 -9.52552 -9.03496 -7.96024 -5.25808 0.37706 0.46625 1.45188 1.48875 1.54810 1.67076 1.96549 2.55694 2.73357 2.87595 3.36193 3.40844 3.65047 3.79826 3.81059 3.84060 3.94062 4.02640 4.12468 4.13966 4.15341 4.25021 4.29364 4.31307 4.32840 4.37821 4.42815 4.59958 4.61139 4.65638 4.68319 4.79962 4.81779 4.85182 4.90025 4.90619 4.98008 5.09457 5.10235 5.18216 5.18797 5.41297 5.43582 5.53111 5.54228 5.60782 5.62821 5.65372 6.09800 6.20165 6.25351 6.48652 7.22286 7.30893 8.04236 8.28509 9.27163 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.002224 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.290906 B =12588.162465 C =13194.122252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.974 3.026 4 H -0.295 1.295 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.074 0.926 9 N -0.737 5.737 10 C 0.168 3.832 11 H 0.032 0.968 12 C -0.129 4.129 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.607 5.607 16 C 0.508 3.492 17 O -0.580 6.580 18 C -0.119 4.119 19 C 0.148 3.852 20 H 0.055 0.945 21 O -0.385 6.385 22 C 0.052 3.948 23 C -0.110 4.110 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.117 4.117 29 C -0.129 4.129 30 C 0.120 3.880 31 H 0.251 0.749 32 H 0.372 0.628 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.141 0.859 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.145 0.855 47 H 0.146 0.854 48 H 0.141 0.859 49 H 0.057 0.943 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -31.408 1.174 33.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.221 1.221 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.371 4.371 8 H 0.092 0.908 9 N -0.377 5.377 10 C 0.059 3.941 11 H 0.050 0.950 12 C -0.169 4.169 13 C -0.162 4.162 14 C -0.018 4.018 15 N -0.340 5.340 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.158 4.158 19 C 0.089 3.911 20 H 0.073 0.927 21 O -0.304 6.304 22 C -0.025 4.025 23 C -0.147 4.147 24 C -0.088 4.088 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.135 4.135 29 C -0.130 4.130 30 C -0.004 4.004 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.158 0.842 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.573 -31.036 1.659 33.165 hybrid contribution -0.256 1.549 0.385 1.617 sum 11.317 -29.487 2.044 31.650 Atomic orbital electron populations 1.69822 1.06612 1.26162 1.59369 1.25590 0.96425 1.01142 1.03694 0.85200 0.77201 0.79107 0.78195 1.22111 1.20692 1.20015 1.19510 0.91269 0.85040 1.41295 0.90840 1.42505 1.05447 1.00845 1.88872 1.20633 0.93580 0.84685 0.95210 0.95023 1.22077 0.99942 0.97522 0.97336 1.21900 0.98068 0.93440 1.02792 1.22106 0.99270 0.98573 0.81836 1.48200 1.57412 1.19024 1.09387 1.21198 0.79251 0.86624 0.83171 1.90700 1.52669 1.74703 1.27896 1.21872 1.03798 0.92131 0.97958 1.20482 0.83317 0.92231 0.95045 0.92735 1.88125 1.26581 1.71624 1.44096 1.22757 1.02962 0.89975 0.86793 1.21145 0.94840 0.97993 1.00719 1.19757 0.97090 0.93362 0.98584 1.21328 0.95174 0.97919 0.99903 1.21491 0.96605 0.98985 0.96703 1.21432 1.00344 0.92618 0.99932 1.21312 0.93730 1.00005 0.98454 1.20168 0.97370 0.94975 1.00473 1.21513 0.95062 0.83010 1.00824 0.93988 0.79585 0.92741 0.93545 0.87836 0.91603 0.90098 0.86115 0.86096 0.84178 0.87512 0.93225 0.89296 0.87773 0.84191 0.83709 0.83597 0.84169 0.92423 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.64 13.06 21.65 0.28 -60.35 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.24 -13.63 9.93 84.03 0.83 -12.80 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -38.54 5.12 -322.59 -1.65 -40.19 16 10 C 0.17 6.92 2.92 45.07 0.13 7.05 16 11 H 0.03 1.40 8.08 -2.38 -0.02 1.38 16 12 C -0.13 -4.27 5.47 30.62 0.17 -4.10 16 13 C -0.12 -2.65 6.08 30.67 0.19 -2.46 16 14 C 0.10 1.98 6.34 86.36 0.55 2.52 16 15 N -0.61 -17.61 2.97 -818.90 -2.43 -20.04 16 16 C 0.51 15.49 7.57 87.66 0.66 16.15 16 17 O -0.58 -23.74 14.79 11.63 0.17 -23.56 16 18 C -0.12 -2.36 3.44 29.85 0.10 -2.26 16 19 C 0.15 3.43 2.29 29.83 0.07 3.50 16 20 H 0.05 1.49 7.96 -2.38 -0.02 1.47 16 21 O -0.39 -10.49 9.60 -134.31 -1.29 -11.78 16 22 C 0.05 1.03 6.84 71.97 0.49 1.53 16 23 C -0.11 -1.64 6.00 29.85 0.18 -1.46 16 24 C -0.09 -1.49 5.78 -19.84 -0.11 -1.61 16 25 C -0.13 -1.65 9.67 22.32 0.22 -1.43 16 26 C -0.12 -1.36 10.05 22.24 0.22 -1.14 16 27 C -0.13 -1.47 10.05 22.23 0.22 -1.24 16 28 C -0.12 -1.68 9.08 22.32 0.20 -1.48 16 29 C -0.13 -2.41 5.47 -19.86 -0.11 -2.51 16 30 C 0.12 4.54 5.90 86.36 0.51 5.05 16 31 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 32 H 0.37 20.92 7.80 -92.71 -0.72 20.20 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 1.35 5.93 -2.39 -0.01 1.33 16 39 H 0.12 2.00 7.94 -2.39 -0.02 1.98 16 40 H 0.14 1.81 5.87 -2.39 -0.01 1.79 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 45 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.15 0.91 8.06 -2.92 -0.02 0.89 16 47 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 48 H 0.14 1.46 6.45 -2.91 -0.02 1.44 16 49 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 50 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -78.79 393.53 2.32 -76.47 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: 0.22 Total: 31.09 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 4.99 Total: -0.71 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -3.80 Total: -120.59 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.12 Total: -35.35 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.79 2.32 -76.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000733187.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.058 kcal (2) G-P(sol) polarization free energy of solvation -78.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds