Wall clock time and date at job start Wed Apr 1 2020 03:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48495 * 109.47563 * 270.00042 * 3 2 1 5 5 H 1.48498 * 109.47351 * 30.00694 * 3 2 1 6 6 H 1.48505 * 109.47269 * 150.00216 * 3 2 1 7 7 C 1.38809 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99799 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00281 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00079 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49828 * 324.99506 * 10 9 7 12 12 C 1.53045 * 109.49994 * 85.06280 * 10 9 7 13 13 C 1.53103 * 109.50141 * 181.31731 * 12 10 9 14 14 C 1.53196 * 109.33279 * 298.65063 * 13 12 10 15 15 N 1.46928 * 108.77176 * 54.64120 * 14 13 12 16 16 C 1.34770 * 120.63505 * 126.36781 * 15 14 13 17 17 O 1.21286 * 120.00333 * 176.57176 * 16 15 14 18 18 C 1.50705 * 119.99805 * 356.57321 * 16 15 14 19 19 C 1.50700 * 109.86949 * 286.77496 * 18 16 15 20 20 C 1.38241 * 119.99786 * 307.56715 * 19 18 16 21 21 C 1.38235 * 119.99803 * 179.76813 * 20 19 18 22 22 C 1.38231 * 120.00172 * 0.48156 * 21 20 19 23 23 C 1.38242 * 119.99882 * 359.79021 * 22 21 20 24 24 C 1.38227 * 120.00162 * 127.83640 * 19 18 16 25 25 C 1.54100 * 109.88086 * 165.61204 * 18 16 15 26 26 C 1.54811 * 104.18836 * 242.60336 * 25 18 16 27 27 C 1.55000 * 102.08949 * 20.88199 * 26 25 18 28 28 O 1.43748 * 109.87906 * 47.77846 * 18 16 15 29 29 C 1.46927 * 118.73692 * 306.39197 * 15 14 13 30 30 H 0.96998 * 120.00401 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99920 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.45706 * 301.36796 * 12 10 9 33 33 H 1.08998 * 109.45853 * 61.33017 * 12 10 9 34 34 H 1.09006 * 109.49052 * 178.70296 * 13 12 10 35 35 H 1.08998 * 109.51889 * 58.62869 * 13 12 10 36 36 H 1.08998 * 109.58702 * 294.85504 * 14 13 12 37 37 H 1.09001 * 109.70623 * 174.49424 * 14 13 12 38 38 H 1.08003 * 120.00087 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.99990 * 180.24983 * 21 20 19 40 40 H 1.07996 * 120.00377 * 179.76847 * 22 21 20 41 41 H 1.07996 * 120.00065 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00383 * 0.02562 * 24 19 18 43 43 H 1.09002 * 110.48723 * 1.28080 * 25 18 16 44 44 H 1.09005 * 110.48667 * 123.92729 * 25 18 16 45 45 H 1.08997 * 110.90706 * 262.68083 * 26 25 18 46 46 H 1.09000 * 110.93650 * 139.08895 * 26 25 18 47 47 H 1.08999 * 110.61499 * 204.47531 * 27 26 25 48 48 H 1.08993 * 110.75292 * 81.54165 * 27 26 25 49 49 H 1.08999 * 109.58733 * 293.82072 * 29 15 14 50 50 H 1.09003 * 109.70698 * 173.46508 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4706 -0.0022 11 1 3.5655 -3.2070 0.5869 12 6 4.2596 -2.9742 -1.4399 13 6 4.9964 -4.3163 -1.4384 14 6 6.3964 -4.1256 -0.8464 15 7 6.2686 -3.5062 0.4798 16 6 6.8431 -4.0715 1.5600 17 8 6.7832 -3.5186 2.6378 18 6 7.5598 -5.3907 1.4285 19 6 6.5578 -6.5031 1.2567 20 6 5.5180 -6.6419 2.1571 21 6 4.5962 -7.6594 1.9968 22 6 4.7197 -8.5442 0.9419 23 6 5.7628 -8.4088 0.0448 24 6 6.6816 -7.3881 0.2021 25 6 8.4214 -5.6459 2.6804 26 6 9.8713 -5.6937 2.1399 27 6 9.7402 -4.9400 0.7918 28 8 8.4479 -5.3540 0.2988 29 6 5.5022 -2.2591 0.6061 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 3.2720 -3.1017 -1.8830 33 1 4.8278 -2.2488 -2.0222 34 1 5.0809 -4.6859 -2.4604 35 1 4.4416 -5.0356 -0.8361 36 1 6.9832 -3.4775 -1.4974 37 1 6.8903 -5.0926 -0.7520 38 1 5.4240 -5.9533 2.9838 39 1 3.7815 -7.7654 2.6979 40 1 4.0017 -9.3414 0.8188 41 1 5.8596 -9.1003 -0.7791 42 1 7.4967 -7.2826 -0.4985 43 1 8.3072 -4.8307 3.3949 44 1 8.1541 -6.5975 3.1400 45 1 10.1933 -6.7227 1.9806 46 1 10.5546 -5.1737 2.8113 47 1 10.5289 -5.2443 0.1037 48 1 9.7639 -3.8617 0.9483 49 1 6.0161 -1.4588 0.0737 50 1 5.4037 -1.9932 1.6586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000797691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:42 Heat of formation + Delta-G solvation = -27.954319 kcal Electronic energy + Delta-G solvation = -32107.893536 eV Core-core repulsion = 28100.571955 eV Total energy + Delta-G solvation = -4007.321581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.39272 -39.05116 -38.54549 -37.31167 -34.64062 -32.73474 -32.48945 -31.86703 -31.33306 -30.95183 -29.00232 -28.23480 -25.59068 -24.04556 -23.41270 -22.93920 -21.99971 -21.83802 -21.43327 -19.97704 -18.99432 -17.76535 -17.61334 -17.11131 -16.72557 -16.04323 -15.62675 -15.02880 -14.93179 -14.73808 -14.55240 -14.18668 -14.01693 -13.82273 -13.66957 -13.47123 -13.38277 -13.35126 -12.94619 -12.70286 -12.58700 -12.44632 -12.11520 -12.08250 -11.64294 -11.43745 -11.24475 -11.13570 -11.05032 -11.00741 -10.91857 -10.74004 -10.57544 -10.47573 -10.29764 -10.07525 -9.60278 -9.54550 -9.02416 -8.92629 -8.76790 -8.43069 -7.28494 -5.76861 -3.13212 1.14653 1.29156 2.53606 3.02683 3.32525 3.38488 3.41572 3.46262 3.65645 4.20363 4.38146 4.41690 4.59460 4.64732 4.72847 4.84139 4.90141 5.01448 5.06745 5.09805 5.27054 5.29351 5.33307 5.37376 5.41277 5.43196 5.49891 5.53033 5.55759 5.65990 5.67668 5.69698 5.77491 5.81574 5.89815 5.93387 6.02467 6.09363 6.17508 6.26592 6.36482 6.39009 6.40696 6.45554 6.56340 6.67682 6.83467 6.84427 6.97826 7.52261 7.98120 8.17638 8.41569 9.19310 9.91759 10.10955 11.41337 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003558 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.011555 B = 7867.643273 C = 8760.448730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.175 3.825 11 H 0.058 0.942 12 C -0.136 4.136 13 C -0.133 4.133 14 C 0.104 3.896 15 N -0.586 5.586 16 C 0.510 3.490 17 O -0.538 6.538 18 C 0.137 3.863 19 C -0.082 4.082 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.095 4.095 25 C -0.137 4.137 26 C -0.151 4.151 27 C 0.040 3.960 28 O -0.352 6.352 29 C 0.101 3.899 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.063 0.937 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.936 -18.255 0.383 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.064 3.936 11 H 0.076 0.924 12 C -0.177 4.177 13 C -0.172 4.172 14 C -0.018 4.018 15 N -0.318 5.318 16 C 0.296 3.704 17 O -0.416 6.416 18 C 0.094 3.906 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.133 4.133 22 C -0.133 4.133 23 C -0.140 4.140 24 C -0.113 4.113 25 C -0.175 4.175 26 C -0.189 4.189 27 C -0.036 4.036 28 O -0.271 6.271 29 C -0.022 4.022 30 H 0.070 0.930 31 H 0.194 0.806 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.082 0.918 49 H 0.081 0.919 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 20.580 -18.040 0.742 27.378 hybrid contribution 0.445 1.389 -0.014 1.459 sum 21.025 -16.651 0.728 26.830 Atomic orbital electron populations 1.69695 1.05099 1.25847 1.57448 1.24650 0.95211 0.97161 1.01923 0.86565 0.79308 0.85022 0.77758 1.21068 1.21695 1.20268 1.19034 0.80294 0.94741 1.43120 0.89189 1.42675 1.04090 1.01708 1.90312 1.20429 0.89875 0.89559 0.93699 0.92428 1.22242 1.00568 0.94929 0.99938 1.21939 0.95616 0.99040 1.00557 1.22062 0.97537 0.99451 0.82791 1.47967 1.50666 1.25087 1.08047 1.20665 0.79558 0.86154 0.84046 1.90681 1.60727 1.63369 1.26838 1.20941 0.90299 0.91267 0.88113 1.19358 0.95926 0.95945 0.96996 1.20994 0.93961 0.98263 0.98978 1.21112 0.98784 0.94987 0.98398 1.21214 0.98036 0.99164 0.94907 1.21142 0.95086 0.98381 0.99374 1.20957 0.99220 0.94063 0.97029 1.22983 0.93150 1.04745 0.96644 1.23128 0.96890 1.01709 0.97131 1.23672 0.85623 0.98896 0.95382 1.88906 1.20188 1.88755 1.29270 1.22044 0.92293 0.84682 1.03214 0.93033 0.80629 0.91161 0.92663 0.91360 0.91838 0.91789 0.87843 0.85787 0.85722 0.86011 0.85903 0.85046 0.87958 0.89637 0.90257 0.89829 0.88311 0.91847 0.91867 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.32 27.73 -169.99 -4.71 17.60 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 7 C -0.24 -6.87 10.41 -15.06 -0.16 -7.03 16 8 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 9 N -0.75 -17.87 4.93 -53.31 -0.26 -18.13 16 10 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 11 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 12 C -0.14 -2.37 5.47 -26.65 -0.15 -2.52 16 13 C -0.13 -1.85 6.08 -26.58 -0.16 -2.01 16 14 C 0.10 1.36 5.57 -3.71 -0.02 1.34 16 15 N -0.59 -9.02 2.97 -172.76 -0.51 -9.53 16 16 C 0.51 7.84 5.99 -10.99 -0.07 7.77 16 17 O -0.54 -9.80 14.75 5.55 0.08 -9.72 16 18 C 0.14 1.63 0.53 -92.35 -0.05 1.58 16 19 C -0.08 -0.96 3.86 -104.62 -0.40 -1.36 16 20 C -0.10 -1.28 9.00 -39.58 -0.36 -1.63 16 21 C -0.11 -1.25 10.05 -39.59 -0.40 -1.65 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.09 -0.97 8.40 -39.59 -0.33 -1.30 16 25 C -0.14 -1.42 6.05 -25.20 -0.15 -1.57 16 26 C -0.15 -1.15 7.15 -24.72 -0.18 -1.33 16 27 C 0.04 0.34 7.66 38.21 0.29 0.63 16 28 O -0.35 -3.72 6.64 -35.23 -0.23 -3.95 16 29 C 0.10 1.78 5.89 -3.71 -0.02 1.76 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.36 8.49 5.66 -40.82 -0.23 8.26 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.24 3.23 -51.93 -0.17 1.07 16 38 H 0.12 1.64 7.86 -52.48 -0.41 1.23 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.13 1.22 6.97 -52.49 -0.37 0.85 16 43 H 0.10 1.23 6.52 -51.93 -0.34 0.89 16 44 H 0.08 0.81 7.63 -51.93 -0.40 0.42 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.09 1.80 7.03 -51.93 -0.37 1.44 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -33.13 387.31 -10.05 -43.19 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.78 Total: 10.42 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -3.24 Total: -7.00 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.00 Total: -56.37 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.15 Total: -13.67 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.13 -10.05 -43.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000797691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.233 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds