Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 119.99567 * 2 1 4 4 H 1.48495 * 109.47563 * 270.00042 * 3 2 1 5 5 H 1.48498 * 109.47351 * 30.00694 * 3 2 1 6 6 H 1.48505 * 109.47269 * 150.00216 * 3 2 1 7 7 C 1.38809 * 120.00538 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99799 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00281 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00079 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49828 * 324.99506 * 10 9 7 12 12 C 1.53045 * 109.49994 * 85.06280 * 10 9 7 13 13 C 1.53103 * 109.50141 * 181.31731 * 12 10 9 14 14 C 1.53196 * 109.33279 * 298.65063 * 13 12 10 15 15 N 1.46928 * 108.77176 * 54.64120 * 14 13 12 16 16 C 1.34770 * 120.63505 * 126.36781 * 15 14 13 17 17 O 1.21286 * 120.00333 * 176.57176 * 16 15 14 18 18 C 1.50705 * 119.99805 * 356.57321 * 16 15 14 19 19 C 1.50700 * 109.86949 * 286.77496 * 18 16 15 20 20 C 1.38241 * 119.99786 * 307.56715 * 19 18 16 21 21 C 1.38235 * 119.99803 * 179.76813 * 20 19 18 22 22 C 1.38231 * 120.00172 * 0.48156 * 21 20 19 23 23 C 1.38242 * 119.99882 * 359.79021 * 22 21 20 24 24 C 1.38227 * 120.00162 * 127.83640 * 19 18 16 25 25 C 1.54100 * 109.88086 * 165.61204 * 18 16 15 26 26 C 1.54811 * 104.18836 * 242.60336 * 25 18 16 27 27 C 1.55000 * 102.08949 * 20.88199 * 26 25 18 28 28 O 1.43748 * 109.87906 * 47.77846 * 18 16 15 29 29 C 1.46927 * 118.73692 * 306.39197 * 15 14 13 30 30 H 0.96998 * 120.00401 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99920 * 359.97438 * 9 7 2 32 32 H 1.08993 * 109.45706 * 301.36796 * 12 10 9 33 33 H 1.08998 * 109.45853 * 61.33017 * 12 10 9 34 34 H 1.09006 * 109.49052 * 178.70296 * 13 12 10 35 35 H 1.08998 * 109.51889 * 58.62869 * 13 12 10 36 36 H 1.08998 * 109.58702 * 294.85504 * 14 13 12 37 37 H 1.09001 * 109.70623 * 174.49424 * 14 13 12 38 38 H 1.08003 * 120.00087 * 359.97438 * 20 19 18 39 39 H 1.08002 * 119.99990 * 180.24983 * 21 20 19 40 40 H 1.07996 * 120.00377 * 179.76847 * 22 21 20 41 41 H 1.07996 * 120.00065 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00383 * 0.02562 * 24 19 18 43 43 H 1.09002 * 110.48723 * 1.28080 * 25 18 16 44 44 H 1.09005 * 110.48667 * 123.92729 * 25 18 16 45 45 H 1.08997 * 110.90706 * 262.68083 * 26 25 18 46 46 H 1.09000 * 110.93650 * 139.08895 * 26 25 18 47 47 H 1.08999 * 110.61499 * 204.47531 * 27 26 25 48 48 H 1.08993 * 110.75292 * 81.54165 * 27 26 25 49 49 H 1.08999 * 109.58733 * 293.82072 * 29 15 14 50 50 H 1.09003 * 109.70698 * 173.46508 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4706 -0.0022 11 1 3.5655 -3.2070 0.5869 12 6 4.2596 -2.9742 -1.4399 13 6 4.9964 -4.3163 -1.4384 14 6 6.3964 -4.1256 -0.8464 15 7 6.2686 -3.5062 0.4798 16 6 6.8431 -4.0715 1.5600 17 8 6.7832 -3.5186 2.6378 18 6 7.5598 -5.3907 1.4285 19 6 6.5578 -6.5031 1.2567 20 6 5.5180 -6.6419 2.1571 21 6 4.5962 -7.6594 1.9968 22 6 4.7197 -8.5442 0.9419 23 6 5.7628 -8.4088 0.0448 24 6 6.6816 -7.3881 0.2021 25 6 8.4214 -5.6459 2.6804 26 6 9.8713 -5.6937 2.1399 27 6 9.7402 -4.9400 0.7918 28 8 8.4479 -5.3540 0.2988 29 6 5.5022 -2.2591 0.6061 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3619 -0.0014 32 1 3.2720 -3.1017 -1.8830 33 1 4.8278 -2.2488 -2.0222 34 1 5.0809 -4.6859 -2.4604 35 1 4.4416 -5.0356 -0.8361 36 1 6.9832 -3.4775 -1.4974 37 1 6.8903 -5.0926 -0.7520 38 1 5.4240 -5.9533 2.9838 39 1 3.7815 -7.7654 2.6979 40 1 4.0017 -9.3414 0.8188 41 1 5.8596 -9.1003 -0.7791 42 1 7.4967 -7.2826 -0.4985 43 1 8.3072 -4.8307 3.3949 44 1 8.1541 -6.5975 3.1400 45 1 10.1933 -6.7227 1.9806 46 1 10.5546 -5.1737 2.8113 47 1 10.5289 -5.2443 0.1037 48 1 9.7639 -3.8617 0.9483 49 1 6.0161 -1.4588 0.0737 50 1 5.4037 -1.9932 1.6586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000797691.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = -48.048577 kcal Electronic energy + Delta-G solvation = -32108.764888 eV Core-core repulsion = 28100.571955 eV Total energy + Delta-G solvation = -4008.192933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.38642 -40.17208 -39.39805 -38.65420 -36.38608 -34.04718 -33.55876 -33.00380 -32.84968 -31.75495 -30.62113 -29.15757 -26.77615 -25.73460 -24.52911 -23.77318 -23.35857 -22.81773 -22.38664 -21.40224 -20.24808 -19.59405 -18.61770 -18.23795 -17.67070 -16.96594 -16.80463 -16.43178 -16.25608 -15.86078 -15.64717 -15.45687 -15.32582 -15.20339 -14.79637 -14.65940 -14.59349 -14.28277 -14.18266 -14.05320 -13.90472 -13.68508 -13.19942 -12.99663 -12.96501 -12.74300 -12.55739 -12.34180 -12.22773 -12.17895 -12.02884 -11.94236 -11.83647 -11.81669 -11.78402 -11.58966 -11.56013 -10.98764 -10.56337 -9.84672 -9.76781 -9.63714 -9.36058 -8.05985 -5.41130 0.32084 0.47701 1.35195 1.35800 1.39055 1.46040 1.82965 2.45254 2.51669 2.83369 3.24656 3.30833 3.46821 3.52052 3.60396 3.89519 3.91434 3.97414 4.03045 4.07862 4.11804 4.14990 4.23724 4.27469 4.29134 4.35352 4.55435 4.59650 4.64852 4.66998 4.69182 4.75980 4.80309 4.88184 4.94692 4.96476 5.00175 5.01881 5.07459 5.11583 5.15492 5.33686 5.41728 5.46766 5.48229 5.56561 5.62100 5.71236 5.74430 6.06608 6.16806 6.32078 6.95503 7.02396 7.75350 7.96404 9.15464 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003558 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.011555 B = 7867.643273 C = 8760.448730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.060 4.060 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.748 5.748 10 C 0.174 3.826 11 H 0.027 0.973 12 C -0.127 4.127 13 C -0.122 4.122 14 C 0.105 3.895 15 N -0.588 5.588 16 C 0.503 3.497 17 O -0.576 6.576 18 C 0.146 3.854 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.094 4.094 25 C -0.140 4.140 26 C -0.141 4.141 27 C 0.035 3.965 28 O -0.352 6.352 29 C 0.111 3.889 30 H 0.259 0.741 31 H 0.366 0.634 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.131 0.869 48 H 0.052 0.948 49 H 0.080 0.920 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.385 -19.611 -1.684 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.251 4.251 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.180 1.180 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.392 5.392 10 C 0.065 3.935 11 H 0.045 0.955 12 C -0.167 4.167 13 C -0.161 4.161 14 C -0.016 4.016 15 N -0.319 5.319 16 C 0.291 3.709 17 O -0.456 6.456 18 C 0.103 3.897 19 C -0.092 4.092 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.112 4.112 25 C -0.178 4.178 26 C -0.179 4.179 27 C -0.041 4.041 28 O -0.271 6.271 29 C -0.013 4.013 30 H 0.068 0.932 31 H 0.200 0.800 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.114 0.886 47 H 0.149 0.851 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 24.091 -19.444 -1.345 30.988 hybrid contribution -0.674 1.682 0.669 1.932 sum 23.417 -17.761 -0.675 29.399 Atomic orbital electron populations 1.69877 1.07130 1.26793 1.59456 1.25477 0.96100 1.01196 1.02348 0.85412 0.78528 0.79525 0.78340 1.19833 1.22176 1.17991 1.18927 0.82236 0.93373 1.41680 0.92933 1.42622 1.02611 1.03467 1.90472 1.20540 0.90385 0.87244 0.95362 0.95497 1.22060 1.00019 0.97342 0.97301 1.21877 0.95431 0.96407 1.02375 1.22261 0.97150 1.00640 0.81565 1.48070 1.50174 1.24403 1.09300 1.21448 0.79165 0.87043 0.83266 1.90656 1.62074 1.64617 1.28266 1.20757 0.90562 0.88987 0.89361 1.19367 0.95729 0.96461 0.97598 1.20948 0.95488 0.98899 0.99219 1.21294 0.98775 0.95159 0.99375 1.21532 0.98646 0.99127 0.94179 1.21522 0.94078 0.98208 0.99665 1.21167 0.99815 0.93741 0.96455 1.22976 0.95099 1.03966 0.95765 1.23142 0.94967 1.02990 0.96782 1.23901 0.85242 0.98462 0.96489 1.88867 1.20901 1.88592 1.28717 1.21703 0.91397 0.86570 1.01586 0.93215 0.80005 0.93728 0.91353 0.88116 0.93160 0.89891 0.86095 0.88249 0.85267 0.83736 0.82889 0.83365 0.90331 0.89181 0.88326 0.88648 0.85134 0.92970 0.90199 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.13 13.97 21.65 0.30 -63.83 16 2 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 3 Si 0.96 46.43 27.73 68.60 1.90 48.33 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 7 C -0.23 -13.62 10.41 84.03 0.87 -12.74 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.75 -36.39 4.93 -322.57 -1.59 -37.98 16 10 C 0.17 7.07 2.92 45.07 0.13 7.20 16 11 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 12 C -0.13 -4.34 5.47 30.64 0.17 -4.18 16 13 C -0.12 -3.16 6.08 30.69 0.19 -2.98 16 14 C 0.10 2.48 5.57 86.36 0.48 2.96 16 15 N -0.59 -17.80 2.97 -818.88 -2.43 -20.23 16 16 C 0.50 15.63 5.99 87.66 0.53 16.16 16 17 O -0.58 -22.03 14.75 -3.05 -0.04 -22.07 16 18 C 0.15 3.35 0.53 -11.91 -0.01 3.35 16 19 C -0.09 -2.04 3.86 -19.87 -0.08 -2.12 16 20 C -0.13 -3.24 9.00 22.27 0.20 -3.04 16 21 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 22 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 23 C -0.12 -1.81 10.05 22.27 0.22 -1.58 16 24 C -0.09 -1.66 8.40 22.27 0.19 -1.47 16 25 C -0.14 -2.82 6.05 31.58 0.19 -2.63 16 26 C -0.14 -1.80 7.15 31.90 0.23 -1.57 16 27 C 0.03 0.47 7.66 72.67 0.56 1.03 16 28 O -0.35 -6.40 6.64 -148.98 -0.99 -7.39 16 29 C 0.11 3.96 5.89 86.36 0.51 4.47 16 30 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 31 H 0.37 16.95 5.66 -92.71 -0.52 16.43 16 32 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.12 2.51 3.23 -2.39 -0.01 2.50 16 38 H 0.10 2.92 7.86 -2.91 -0.02 2.90 16 39 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.15 2.11 6.97 -2.91 -0.02 2.09 16 43 H 0.08 1.97 6.52 -2.39 -0.02 1.95 16 44 H 0.09 1.69 7.63 -2.38 -0.02 1.67 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 50 H 0.07 2.73 7.03 -2.39 -0.02 2.71 16 Total: -1.00 -76.02 387.31 2.80 -73.22 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.36 Total: 34.60 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.29 Total: -4.65 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -3.72 Total: -122.04 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.03 Total: -29.47 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -76.02 2.80 -73.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000797691.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.173 kcal (2) G-P(sol) polarization free energy of solvation -76.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds