Wall clock time and date at job start Wed Apr 1 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48503 * 109.46803 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46964 * 299.99788 * 3 2 1 6 6 H 1.48497 * 109.47268 * 59.99947 * 3 2 1 7 7 C 1.38810 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99556 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00447 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00045 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.52480 * 34.91233 * 10 9 7 12 12 C 1.53039 * 109.49475 * 274.83273 * 10 9 7 13 13 C 1.53042 * 109.53646 * 178.68356 * 12 10 9 14 14 C 1.53189 * 109.31360 * 61.36976 * 13 12 10 15 15 N 1.46928 * 108.77135 * 305.36353 * 14 13 12 16 16 C 1.34775 * 120.62839 * 233.58280 * 15 14 13 17 17 O 1.21281 * 120.00010 * 356.18790 * 16 15 14 18 18 C 1.50697 * 119.99817 * 176.18261 * 16 15 14 19 19 C 1.50703 * 109.87122 * 287.01392 * 18 16 15 20 20 C 1.38235 * 120.00074 * 307.54700 * 19 18 16 21 21 C 1.38236 * 120.00022 * 179.74482 * 20 19 18 22 22 C 1.38236 * 119.99559 * 0.52536 * 21 20 19 23 23 C 1.38235 * 120.00229 * 359.74761 * 22 21 20 24 24 C 1.38234 * 120.00140 * 359.97438 * 23 22 21 25 25 C 1.54104 * 109.87620 * 166.00946 * 18 16 15 26 26 C 1.54815 * 104.18705 * 242.60486 * 25 18 16 27 27 C 1.54989 * 102.09037 * 20.87978 * 26 25 18 28 28 O 1.43739 * 109.87966 * 48.02364 * 18 16 15 29 29 C 1.46926 * 118.74213 * 53.61167 * 15 14 13 30 30 H 0.96999 * 120.00408 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00107 * 359.97438 * 9 7 2 32 32 H 1.09008 * 109.46164 * 58.66716 * 12 10 9 33 33 H 1.08998 * 109.46317 * 298.70416 * 12 10 9 34 34 H 1.09000 * 109.49940 * 301.41011 * 13 12 10 35 35 H 1.09004 * 109.52144 * 181.33663 * 13 12 10 36 36 H 1.08993 * 109.58679 * 185.57694 * 14 13 12 37 37 H 1.09006 * 109.58471 * 65.15015 * 14 13 12 38 38 H 1.08005 * 120.00124 * 359.97438 * 20 19 18 39 39 H 1.07998 * 119.99773 * 180.29433 * 21 20 19 40 40 H 1.08005 * 119.99418 * 179.77496 * 22 21 20 41 41 H 1.07998 * 119.99564 * 180.02562 * 23 22 21 42 42 H 1.07994 * 120.00203 * 179.97438 * 24 23 22 43 43 H 1.08997 * 110.49073 * 1.28539 * 25 18 16 44 44 H 1.09009 * 110.48519 * 123.79713 * 25 18 16 45 45 H 1.08990 * 110.90747 * 139.08391 * 26 25 18 46 46 H 1.09005 * 110.90349 * 262.65032 * 26 25 18 47 47 H 1.09001 * 110.62297 * 81.47957 * 27 26 25 48 48 H 1.09004 * 110.62140 * 204.31686 * 27 26 25 49 49 H 1.09003 * 109.58579 * 66.16874 * 29 15 14 50 50 H 1.08992 * 109.58696 * 186.60235 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9694 -3.5507 0.5903 12 6 2.4199 -4.0389 -1.4354 13 6 3.2137 -5.3474 -1.4327 14 6 2.3486 -6.4635 -0.8388 15 7 1.8766 -6.0413 0.4870 16 6 2.0784 -6.8205 1.5680 17 8 2.5923 -7.9117 1.4415 18 6 1.6656 -6.3357 2.9338 19 6 2.6118 -5.2609 3.4035 20 6 3.9750 -5.4899 3.3990 21 6 4.8432 -4.5021 3.8248 22 6 4.3475 -3.2892 4.2654 23 6 2.9839 -3.0623 4.2752 24 6 2.1161 -4.0480 3.8440 25 6 1.6712 -7.5109 3.9306 26 6 0.1962 -7.6294 4.3858 27 6 -0.5567 -6.9118 3.2368 28 8 0.3250 -5.8195 2.8847 29 6 1.1799 -4.7537 0.6118 30 1 -0.4851 0.8400 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 3.0245 -3.2484 -1.8802 33 1 1.5074 -4.1690 -2.0173 34 1 4.1141 -5.2255 -0.8306 35 1 3.4916 -5.6070 -2.4542 36 1 2.9411 -7.3733 -0.7431 37 1 1.4937 -6.6485 -1.4893 38 1 4.3621 -6.4393 3.0593 39 1 5.9085 -4.6793 3.8168 40 1 5.0257 -2.5187 4.6016 41 1 2.5968 -2.1145 4.6191 42 1 1.0508 -3.8709 3.8520 43 1 1.9932 -8.4281 3.4374 44 1 2.3178 -7.2881 4.7795 45 1 -0.1063 -8.6741 4.4564 46 1 0.0395 -7.1160 5.3346 47 1 -0.6936 -7.5834 2.3892 48 1 -1.5182 -6.5342 3.5849 49 1 0.2297 -4.7993 0.0796 50 1 1.0014 -4.5355 1.6647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000797693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:44 Heat of formation + Delta-G solvation = -48.386044 kcal Electronic energy + Delta-G solvation = -32758.450358 eV Core-core repulsion = 28750.242791 eV Total energy + Delta-G solvation = -4008.207567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.35392 -40.09429 -39.36750 -38.62448 -36.06183 -34.00160 -33.55998 -33.19718 -32.44558 -31.74539 -29.96926 -29.18726 -26.79620 -25.70112 -24.76532 -23.76526 -23.48076 -22.69087 -22.23557 -21.26583 -20.13632 -19.19345 -18.57106 -18.17978 -17.59725 -16.93194 -16.77505 -16.54560 -16.03535 -15.79562 -15.61544 -15.44807 -15.27063 -15.14629 -14.84877 -14.63058 -14.42341 -14.31050 -14.18001 -13.89453 -13.66556 -13.56258 -13.01376 -12.95541 -12.87198 -12.71189 -12.38624 -12.34537 -12.23135 -12.09943 -12.07344 -11.93718 -11.87609 -11.76911 -11.63873 -11.56826 -11.55217 -10.91595 -10.52103 -9.82590 -9.71852 -9.60413 -8.97211 -7.90576 -5.18602 0.34392 0.49672 1.36263 1.47857 1.48682 1.57849 1.88823 2.57923 2.58100 2.85488 3.28038 3.42618 3.48291 3.62074 3.87008 3.92308 3.98748 4.03510 4.07072 4.08473 4.12137 4.16018 4.28340 4.32742 4.35314 4.36968 4.58253 4.60085 4.64491 4.69662 4.75430 4.81396 4.85509 4.91108 4.93673 4.96905 5.01531 5.02842 5.06697 5.12131 5.15474 5.34344 5.45172 5.49508 5.52147 5.54048 5.58897 5.63768 5.79459 6.06937 6.26864 6.32972 6.96593 7.37739 8.09376 8.35629 9.32812 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010777 B = 0.004582 C = 0.004097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.463928 B = 6109.780527 C = 6832.942826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.067 4.067 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.226 4.226 8 H 0.068 0.932 9 N -0.726 5.726 10 C 0.172 3.828 11 H 0.030 0.970 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.107 3.893 15 N -0.589 5.589 16 C 0.512 3.488 17 O -0.564 6.564 18 C 0.136 3.864 19 C -0.090 4.090 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.134 4.134 26 C -0.140 4.140 27 C 0.030 3.970 28 O -0.364 6.364 29 C 0.111 3.889 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.061 0.939 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -16.259 8.515 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.260 4.260 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.366 5.366 10 C 0.063 3.937 11 H 0.048 0.952 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.015 4.015 15 N -0.320 5.320 16 C 0.300 3.700 17 O -0.444 6.444 18 C 0.093 3.907 19 C -0.090 4.090 20 C -0.138 4.138 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.171 4.171 26 C -0.178 4.178 27 C -0.045 4.045 28 O -0.284 6.284 29 C -0.012 4.012 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.140 0.860 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.135 0.865 49 H 0.079 0.921 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.612 -16.492 8.385 19.067 hybrid contribution -0.155 1.257 -0.358 1.316 sum 4.457 -15.235 8.027 17.787 Atomic orbital electron populations 1.69803 1.06365 1.25768 1.59759 1.25375 0.96188 1.00416 1.03974 0.85233 0.78265 0.80627 0.76645 1.19414 1.22290 1.22012 1.19447 0.90928 0.84933 1.40526 0.91444 1.42369 1.05294 1.00359 1.88574 1.20535 0.93762 0.85214 0.94210 0.95184 1.22132 0.99714 0.96587 0.98712 1.21828 0.97884 0.94005 1.02069 1.21785 0.98969 0.98157 0.82569 1.48066 1.55897 1.19902 1.08107 1.21069 0.78108 0.84003 0.86824 1.90610 1.46138 1.21536 1.86124 1.20920 0.84325 0.93773 0.91709 1.19402 0.93408 0.94532 1.01687 1.20980 0.92278 1.00027 1.00467 1.21321 1.00567 0.93122 0.98730 1.21465 0.95386 0.97725 0.99035 1.21373 0.94192 0.99064 0.99681 1.20975 1.00424 0.92522 0.97522 1.22965 0.99455 0.96820 0.97908 1.23120 0.92504 1.03008 0.99139 1.23959 0.95032 0.88602 0.96921 1.89073 1.14424 1.34715 1.90140 1.22142 0.94123 0.81173 1.03799 0.94110 0.79400 0.93466 0.92602 0.92602 0.88548 0.89045 0.90272 0.86098 0.83584 0.84009 0.85537 0.86018 0.89015 0.89114 0.87809 0.89172 0.92274 0.86457 0.92064 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.92 13.06 21.65 0.28 -57.64 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.96 45.66 29.55 68.60 2.03 47.69 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -12.34 9.93 84.03 0.83 -11.50 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -35.88 5.12 -322.57 -1.65 -37.53 16 10 C 0.17 6.93 2.92 45.07 0.13 7.06 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.31 16 12 C -0.13 -4.65 5.47 30.62 0.17 -4.48 16 13 C -0.12 -3.32 6.08 30.67 0.19 -3.13 16 14 C 0.11 2.95 6.42 86.36 0.55 3.50 16 15 N -0.59 -18.54 2.97 -818.91 -2.43 -20.98 16 16 C 0.51 16.08 5.99 87.66 0.53 16.60 16 17 O -0.56 -19.11 14.74 -3.03 -0.04 -19.16 16 18 C 0.14 3.78 0.53 -11.91 -0.01 3.77 16 19 C -0.09 -2.64 3.86 -19.86 -0.08 -2.72 16 20 C -0.12 -3.29 8.99 22.27 0.20 -3.09 16 21 C -0.12 -2.98 10.05 22.27 0.22 -2.76 16 22 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 23 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 24 C -0.10 -3.02 8.40 22.27 0.19 -2.83 16 25 C -0.13 -3.00 6.05 31.59 0.19 -2.81 16 26 C -0.14 -2.40 7.15 31.89 0.23 -2.17 16 27 C 0.03 0.63 7.66 72.66 0.56 1.18 16 28 O -0.36 -10.22 6.66 -148.98 -0.99 -11.22 16 29 C 0.11 3.91 5.05 86.36 0.44 4.35 16 30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.37 19.84 7.80 -92.71 -0.72 19.11 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.48 7.03 -2.39 -0.02 2.46 16 37 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.12 3.24 7.86 -2.91 -0.02 3.22 16 39 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.12 3.99 6.97 -2.91 -0.02 3.97 16 43 H 0.09 2.22 6.52 -2.39 -0.02 2.20 16 44 H 0.09 1.90 7.62 -2.38 -0.02 1.88 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 50 H 0.11 3.93 3.23 -2.39 -0.01 3.92 16 Total: -1.00 -65.85 390.41 2.66 -63.19 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: 0.22 Total: 44.34 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.25 Total: -8.70 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -3.80 Total: -116.15 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.04 Total: -30.37 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -65.85 2.66 -63.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000797693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.805 kcal (2) G-P(sol) polarization free energy of solvation -65.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds