Wall clock time and date at job start Wed Apr 1 2020 03:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46832 * 30.00252 * 3 2 1 6 6 H 1.48502 * 109.47312 * 149.99836 * 3 2 1 7 7 C 1.38812 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00480 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00226 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49675 * 325.06428 * 10 9 7 12 12 C 1.53037 * 109.50042 * 85.16185 * 10 9 7 13 13 C 1.53036 * 109.54144 * 181.31720 * 12 10 9 14 14 C 1.53619 * 109.24395 * 298.51450 * 13 12 10 15 15 N 1.46928 * 108.54518 * 54.85342 * 14 13 12 16 16 C 1.34775 * 120.63240 * 126.37159 * 15 14 13 17 17 O 1.21283 * 119.99797 * 354.15267 * 16 15 14 18 18 C 1.50694 * 120.00070 * 174.42854 * 16 15 14 19 19 C 1.50703 * 109.82383 * 79.54166 * 18 16 15 20 20 C 1.38235 * 120.00097 * 51.38853 * 19 18 16 21 21 C 1.38238 * 120.00093 * 179.81403 * 20 19 18 22 22 C 1.38238 * 119.99837 * 0.39607 * 21 20 19 23 23 C 1.38233 * 120.00129 * 359.86020 * 22 21 20 24 24 C 1.38237 * 120.00159 * 359.95218 * 23 22 21 25 25 C 1.54382 * 109.83358 * 200.42361 * 18 16 15 26 26 C 1.55308 * 102.25161 * 98.15833 * 25 18 16 27 27 C 1.54943 * 100.94192 * 34.13516 * 26 25 18 28 28 O 1.43232 * 109.83375 * 318.65473 * 18 16 15 29 29 C 1.46927 * 118.73609 * 306.09666 * 15 14 13 30 30 H 0.97000 * 119.99325 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99741 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46046 * 301.34206 * 12 10 9 33 33 H 1.09000 * 109.45823 * 61.30955 * 12 10 9 34 34 H 1.09002 * 109.49585 * 58.58632 * 13 12 10 35 35 H 1.08997 * 109.49932 * 178.65396 * 13 12 10 36 36 H 1.09004 * 109.74134 * 295.11695 * 14 13 12 37 37 H 1.09004 * 109.67096 * 174.54865 * 14 13 12 38 38 H 1.07993 * 119.99905 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.00095 * 180.23716 * 21 20 19 40 40 H 1.08000 * 119.99986 * 179.83476 * 22 21 20 41 41 H 1.07993 * 120.00478 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00304 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.85217 * 216.34778 * 25 18 16 44 44 H 1.09002 * 110.84554 * 339.97352 * 25 18 16 45 45 H 1.08994 * 111.12614 * 152.06045 * 26 25 18 46 46 H 1.09004 * 111.12171 * 276.17968 * 26 25 18 47 47 H 1.09001 * 110.30824 * 82.47099 * 27 26 25 48 48 H 1.08994 * 110.31174 * 204.64313 * 27 26 25 49 49 H 1.09004 * 109.58538 * 173.64615 * 29 15 14 50 50 H 1.08998 * 109.58942 * 294.07431 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9694 -3.5507 -0.5890 12 6 2.4187 -4.0384 1.4369 13 6 3.2123 -5.3469 1.4353 14 6 2.3427 -6.4658 0.8422 15 7 1.8767 -6.0415 -0.4850 16 6 2.0792 -6.8212 -1.5656 17 8 2.7423 -7.8320 -1.4683 18 6 1.4870 -6.4337 -2.8960 19 6 2.3371 -5.3714 -3.5439 20 6 3.6999 -5.5617 -3.6755 21 6 4.4792 -4.5889 -4.2733 22 6 3.8968 -3.4222 -4.7322 23 6 2.5348 -3.2295 -4.5958 24 6 1.7549 -4.2040 -4.0015 25 6 1.4066 -7.6722 -3.8142 26 6 -0.0719 -8.1153 -3.6413 27 6 -0.7713 -6.7439 -3.4658 28 8 0.1542 -5.9431 -2.7103 29 6 1.1802 -4.7540 -0.6109 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0229 -3.2477 1.8818 33 1 1.5058 -4.1683 2.0181 34 1 4.1131 -5.2253 0.8337 35 1 3.4895 -5.6056 2.4572 36 1 1.4850 -6.6479 1.4897 37 1 2.9322 -7.3778 0.7481 38 1 4.1554 -6.4719 -3.3144 39 1 5.5433 -4.7393 -4.3796 40 1 4.5060 -2.6610 -5.1968 41 1 2.0798 -2.3179 -4.9539 42 1 0.6908 -4.0533 -3.8946 43 1 1.6117 -7.4013 -4.8499 44 1 2.0876 -8.4522 -3.4739 45 1 -0.4343 -8.6302 -4.5309 46 1 -0.1946 -8.7360 -2.7537 47 1 -0.9590 -6.2878 -4.4379 48 1 -1.7050 -6.8629 -2.9163 49 1 1.0024 -4.5361 -1.6640 50 1 0.2296 -4.7992 -0.0794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000797696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:49 Heat of formation + Delta-G solvation = -33.425278 kcal Electronic energy + Delta-G solvation = -32629.603895 eV Core-core repulsion = 28622.045075 eV Total energy + Delta-G solvation = -4007.558819 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17316 -38.91148 -38.26647 -37.23118 -34.27773 -32.69068 -32.45792 -31.68870 -31.08418 -30.65626 -28.37353 -28.11319 -25.40760 -23.74934 -23.53012 -22.62523 -22.32719 -21.56797 -21.13583 -19.90286 -18.85910 -17.66624 -17.27656 -16.97211 -16.09780 -15.81107 -15.41517 -15.01182 -14.84208 -14.54021 -14.37285 -14.09899 -13.82130 -13.74677 -13.51481 -13.37957 -13.18444 -13.08497 -12.80556 -12.62140 -12.39788 -12.21311 -11.90798 -11.86709 -11.48197 -11.28990 -11.02557 -10.90804 -10.87826 -10.83526 -10.83014 -10.56205 -10.39843 -10.34496 -10.24763 -10.01060 -9.66111 -9.41881 -8.88695 -8.71396 -8.52390 -8.30302 -6.95286 -5.75828 -3.04398 1.43404 1.59668 2.64414 3.16691 3.43203 3.49098 3.50189 3.53006 3.96103 4.33363 4.49955 4.53921 4.65152 4.79830 4.97168 5.11318 5.16544 5.22002 5.25379 5.31373 5.33216 5.40170 5.54143 5.56194 5.59598 5.60839 5.63909 5.68831 5.73615 5.78138 5.84815 5.86908 5.95766 5.97297 6.08848 6.18916 6.20519 6.26195 6.39179 6.48087 6.51578 6.60805 6.61913 6.72286 6.78929 6.88014 6.93572 7.10636 7.14609 7.62743 7.72142 8.26452 8.42415 9.53756 10.09516 10.45330 11.46710 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.004535 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.554018 B = 6172.084074 C = 7013.924880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.233 4.233 8 H 0.068 0.932 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.048 0.952 12 C -0.138 4.138 13 C -0.131 4.131 14 C 0.110 3.890 15 N -0.587 5.587 16 C 0.526 3.474 17 O -0.550 6.550 18 C 0.139 3.861 19 C -0.097 4.097 20 C -0.109 4.109 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.085 4.085 25 C -0.133 4.133 26 C -0.155 4.155 27 C 0.043 3.957 28 O -0.350 6.350 29 C 0.103 3.897 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 -15.644 -8.582 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.364 4.364 8 H 0.086 0.914 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.066 0.934 12 C -0.179 4.179 13 C -0.170 4.170 14 C -0.013 4.013 15 N -0.318 5.318 16 C 0.313 3.687 17 O -0.430 6.430 18 C 0.096 3.904 19 C -0.098 4.098 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.103 4.103 25 C -0.171 4.171 26 C -0.192 4.192 27 C -0.033 4.033 28 O -0.269 6.269 29 C -0.020 4.020 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.143 0.857 42 H 0.149 0.851 43 H 0.104 0.896 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.107 0.893 49 H 0.124 0.876 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.471 -15.825 -8.388 18.080 hybrid contribution 0.151 1.052 0.104 1.068 sum 2.622 -14.773 -8.284 17.139 Atomic orbital electron populations 1.69662 1.05020 1.25550 1.57825 1.24691 0.95454 0.97474 1.03094 0.86244 0.78704 0.84084 0.77509 1.21759 1.21827 1.20835 1.19179 0.90874 0.83891 1.42435 0.91357 1.42269 1.05708 0.99409 1.88517 1.20477 0.94576 0.86092 0.93092 0.93426 1.22293 0.99565 0.95321 1.00683 1.21983 0.98796 0.95887 1.00317 1.21742 0.98353 0.98262 0.82908 1.48005 1.56169 1.20386 1.07226 1.20400 0.80151 0.82921 0.85230 1.90631 1.40912 1.26683 1.84730 1.20839 0.83965 0.93181 0.92408 1.19638 0.93737 0.95526 1.00871 1.20897 0.92839 0.99621 0.99328 1.21018 0.99504 0.94137 0.99300 1.21183 0.95182 0.97174 0.99652 1.21176 0.93939 0.98818 0.98944 1.20993 1.00834 0.92199 0.96259 1.23112 0.98053 0.96343 0.99562 1.23268 0.94831 0.97894 1.03219 1.23543 0.93344 0.89840 0.96587 1.88669 1.14345 1.54429 1.69494 1.22339 0.94855 0.81002 1.03824 0.93570 0.78229 0.91688 0.92540 0.91998 0.91510 0.91626 0.89572 0.86128 0.86205 0.86197 0.85746 0.85059 0.89647 0.87836 0.89577 0.90293 0.91621 0.89254 0.87608 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.62 5.12 -53.31 -0.27 -17.89 16 10 C 0.17 3.41 2.92 -67.82 -0.20 3.21 16 11 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 12 C -0.14 -2.51 5.46 -26.69 -0.15 -2.66 16 13 C -0.13 -1.96 6.10 -26.39 -0.16 -2.12 16 14 C 0.11 1.62 6.47 -3.49 -0.02 1.60 16 15 N -0.59 -9.57 2.97 -172.50 -0.51 -10.08 16 16 C 0.53 8.52 5.96 -10.99 -0.07 8.45 16 17 O -0.55 -9.65 14.81 5.55 0.08 -9.57 16 18 C 0.14 1.96 0.61 -92.20 -0.06 1.90 16 19 C -0.10 -1.43 3.93 -104.62 -0.41 -1.84 16 20 C -0.11 -1.55 9.07 -39.58 -0.36 -1.91 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.11 -1.54 10.05 -39.58 -0.40 -1.93 16 23 C -0.11 -1.61 10.05 -39.58 -0.40 -2.01 16 24 C -0.08 -1.28 8.34 -39.58 -0.33 -1.61 16 25 C -0.13 -1.53 5.88 -24.78 -0.15 -1.68 16 26 C -0.15 -1.47 7.16 -24.48 -0.18 -1.64 16 27 C 0.04 0.45 7.78 38.18 0.30 0.74 16 28 O -0.35 -4.90 6.45 -35.23 -0.23 -5.13 16 29 C 0.10 1.82 4.91 -3.71 -0.02 1.81 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 38 H 0.12 1.70 7.74 -52.49 -0.41 1.30 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.13 1.99 7.01 -52.49 -0.37 1.62 16 43 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 44 H 0.10 1.28 6.71 -51.93 -0.35 0.93 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.11 1.93 3.40 -51.93 -0.18 1.75 16 50 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 390.76 15.07 5.89 5.89 Total: -1.00 -31.01 390.76 -10.42 -41.43 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -7.85 Total: 13.64 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.23 Total: -8.60 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.06 Total: -54.84 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.15 Total: -14.70 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.01 -10.42 -41.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000797696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.001 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds