Wall clock time and date at job start Wed Apr 1 2020 03:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48497 * 109.47328 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46832 * 30.00252 * 3 2 1 6 6 H 1.48502 * 109.47312 * 149.99836 * 3 2 1 7 7 C 1.38812 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00480 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.46491 * 120.00226 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49675 * 325.06428 * 10 9 7 12 12 C 1.53037 * 109.50042 * 85.16185 * 10 9 7 13 13 C 1.53036 * 109.54144 * 181.31720 * 12 10 9 14 14 C 1.53619 * 109.24395 * 298.51450 * 13 12 10 15 15 N 1.46928 * 108.54518 * 54.85342 * 14 13 12 16 16 C 1.34775 * 120.63240 * 126.37159 * 15 14 13 17 17 O 1.21283 * 119.99797 * 354.15267 * 16 15 14 18 18 C 1.50694 * 120.00070 * 174.42854 * 16 15 14 19 19 C 1.50703 * 109.82383 * 79.54166 * 18 16 15 20 20 C 1.38235 * 120.00097 * 51.38853 * 19 18 16 21 21 C 1.38238 * 120.00093 * 179.81403 * 20 19 18 22 22 C 1.38238 * 119.99837 * 0.39607 * 21 20 19 23 23 C 1.38233 * 120.00129 * 359.86020 * 22 21 20 24 24 C 1.38237 * 120.00159 * 359.95218 * 23 22 21 25 25 C 1.54382 * 109.83358 * 200.42361 * 18 16 15 26 26 C 1.55308 * 102.25161 * 98.15833 * 25 18 16 27 27 C 1.54943 * 100.94192 * 34.13516 * 26 25 18 28 28 O 1.43232 * 109.83375 * 318.65473 * 18 16 15 29 29 C 1.46927 * 118.73609 * 306.09666 * 15 14 13 30 30 H 0.97000 * 119.99325 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99741 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46046 * 301.34206 * 12 10 9 33 33 H 1.09000 * 109.45823 * 61.30955 * 12 10 9 34 34 H 1.09002 * 109.49585 * 58.58632 * 13 12 10 35 35 H 1.08997 * 109.49932 * 178.65396 * 13 12 10 36 36 H 1.09004 * 109.74134 * 295.11695 * 14 13 12 37 37 H 1.09004 * 109.67096 * 174.54865 * 14 13 12 38 38 H 1.07993 * 119.99905 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.00095 * 180.23716 * 21 20 19 40 40 H 1.08000 * 119.99986 * 179.83476 * 22 21 20 41 41 H 1.07993 * 120.00478 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00304 * 179.97438 * 24 23 22 43 43 H 1.09000 * 110.85217 * 216.34778 * 25 18 16 44 44 H 1.09002 * 110.84554 * 339.97352 * 25 18 16 45 45 H 1.08994 * 111.12614 * 152.06045 * 26 25 18 46 46 H 1.09004 * 111.12171 * 276.17968 * 26 25 18 47 47 H 1.09001 * 110.30824 * 82.47099 * 27 26 25 48 48 H 1.08994 * 110.31174 * 204.64313 * 27 26 25 49 49 H 1.09004 * 109.58538 * 173.64615 * 29 15 14 50 50 H 1.08998 * 109.58942 * 294.07431 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9694 -3.5507 -0.5890 12 6 2.4187 -4.0384 1.4369 13 6 3.2123 -5.3469 1.4353 14 6 2.3427 -6.4658 0.8422 15 7 1.8767 -6.0415 -0.4850 16 6 2.0792 -6.8212 -1.5656 17 8 2.7423 -7.8320 -1.4683 18 6 1.4870 -6.4337 -2.8960 19 6 2.3371 -5.3714 -3.5439 20 6 3.6999 -5.5617 -3.6755 21 6 4.4792 -4.5889 -4.2733 22 6 3.8968 -3.4222 -4.7322 23 6 2.5348 -3.2295 -4.5958 24 6 1.7549 -4.2040 -4.0015 25 6 1.4066 -7.6722 -3.8142 26 6 -0.0719 -8.1153 -3.6413 27 6 -0.7713 -6.7439 -3.4658 28 8 0.1542 -5.9431 -2.7103 29 6 1.1802 -4.7540 -0.6109 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0229 -3.2477 1.8818 33 1 1.5058 -4.1683 2.0181 34 1 4.1131 -5.2253 0.8337 35 1 3.4895 -5.6056 2.4572 36 1 1.4850 -6.6479 1.4897 37 1 2.9322 -7.3778 0.7481 38 1 4.1554 -6.4719 -3.3144 39 1 5.5433 -4.7393 -4.3796 40 1 4.5060 -2.6610 -5.1968 41 1 2.0798 -2.3179 -4.9539 42 1 0.6908 -4.0533 -3.8946 43 1 1.6117 -7.4013 -4.8499 44 1 2.0876 -8.4522 -3.4739 45 1 -0.4343 -8.6302 -4.5309 46 1 -0.1946 -8.7360 -2.7537 47 1 -0.9590 -6.2878 -4.4379 48 1 -1.7050 -6.8629 -2.9163 49 1 1.0024 -4.5361 -1.6640 50 1 0.2296 -4.7992 -0.0794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000797696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:48 Heat of formation + Delta-G solvation = -50.295954 kcal Electronic energy + Delta-G solvation = -32630.335462 eV Core-core repulsion = 28622.045075 eV Total energy + Delta-G solvation = -4008.290387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.30871 -40.14172 -39.32668 -38.64155 -36.05944 -33.99680 -33.52760 -33.19091 -32.45855 -31.74789 -29.97034 -29.30977 -26.70090 -25.69505 -24.62329 -23.73062 -23.55142 -22.53779 -22.45488 -21.30648 -20.15947 -19.24272 -18.68187 -18.19172 -17.38960 -16.91046 -16.60981 -16.50838 -16.08903 -15.85822 -15.61054 -15.49915 -15.27100 -15.03581 -14.92712 -14.73707 -14.48475 -14.30273 -14.10635 -13.85627 -13.64364 -13.54543 -13.00416 -12.93842 -12.85802 -12.79168 -12.41149 -12.34221 -12.19706 -12.13569 -12.08304 -11.95129 -11.89511 -11.82874 -11.65312 -11.56268 -11.40035 -10.88432 -10.53082 -9.83801 -9.71174 -9.59681 -8.97934 -7.91254 -5.19554 0.33473 0.48218 1.38671 1.48165 1.48596 1.56844 1.91502 2.54303 2.57982 2.87274 3.31511 3.41566 3.46133 3.54038 3.87751 3.94491 3.99239 4.03355 4.06156 4.08311 4.12459 4.18857 4.27871 4.32750 4.35098 4.36091 4.58656 4.59918 4.67006 4.71860 4.75324 4.81935 4.85599 4.90613 4.91096 4.98385 5.01812 5.02855 5.07397 5.12336 5.15849 5.34690 5.45965 5.49383 5.53013 5.54765 5.59331 5.62229 5.86865 6.06217 6.27480 6.33652 6.99045 7.36937 8.08514 8.35008 9.31799 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.004535 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.554018 B = 6172.084074 C = 7013.924880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.066 4.066 3 Si 0.964 3.036 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.231 4.231 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.170 3.830 11 H 0.027 0.973 12 C -0.130 4.130 13 C -0.119 4.119 14 C 0.107 3.893 15 N -0.590 5.590 16 C 0.523 3.477 17 O -0.564 6.564 18 C 0.139 3.861 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.144 4.144 27 C 0.035 3.965 28 O -0.371 6.371 29 C 0.118 3.882 30 H 0.251 0.749 31 H 0.375 0.625 32 H 0.046 0.954 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.120 0.880 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.103 0.897 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 -16.670 -8.941 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.259 4.259 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.363 4.363 8 H 0.085 0.915 9 N -0.366 5.366 10 C 0.061 3.939 11 H 0.046 0.954 12 C -0.171 4.171 13 C -0.158 4.158 14 C -0.015 4.015 15 N -0.321 5.321 16 C 0.311 3.689 17 O -0.445 6.445 18 C 0.096 3.904 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.139 4.139 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.118 4.118 25 C -0.168 4.168 26 C -0.182 4.182 27 C -0.040 4.040 28 O -0.291 6.291 29 C -0.005 4.005 30 H 0.059 0.941 31 H 0.207 0.793 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.142 0.858 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.133 0.867 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.321 -16.895 -8.745 19.311 hybrid contribution -0.078 1.308 0.206 1.326 sum 3.243 -15.587 -8.538 18.066 Atomic orbital electron populations 1.69803 1.06342 1.25880 1.59531 1.25392 0.96228 1.00453 1.03822 0.85286 0.77739 0.80206 0.77437 1.21402 1.22222 1.19874 1.19428 0.90947 0.85011 1.40932 0.91498 1.42360 1.05317 1.00316 1.88641 1.20557 0.93721 0.85318 0.94324 0.95440 1.22121 0.99763 0.96580 0.98595 1.21896 0.97836 0.94012 1.02055 1.21878 0.98993 0.98157 0.82432 1.48045 1.56182 1.19766 1.08118 1.20800 0.79740 0.82553 0.85809 1.90616 1.41506 1.27229 1.85112 1.20849 0.83974 0.94045 0.91567 1.19733 0.94090 0.95539 1.00834 1.21024 0.92884 1.00037 0.99840 1.21340 1.00746 0.93573 0.98235 1.21474 0.94920 0.97852 0.99435 1.21393 0.94776 0.99010 0.99263 1.21013 1.00685 0.92815 0.97265 1.23110 0.99283 0.94912 0.99456 1.23255 0.93159 0.97386 1.04363 1.23789 0.93134 0.90089 0.97037 1.88630 1.14689 1.55447 1.70302 1.22006 0.94130 0.80999 1.03373 0.94058 0.79330 0.93506 0.92471 0.92726 0.88571 0.90073 0.89006 0.86175 0.83715 0.83970 0.85330 0.85810 0.88581 0.88713 0.86689 0.90776 0.90438 0.88149 0.87955 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.96 13.06 21.65 0.28 -57.67 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.96 45.83 29.55 68.60 2.03 47.85 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.23 -12.73 9.93 84.03 0.83 -11.90 16 8 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -36.26 5.12 -322.58 -1.65 -37.91 16 10 C 0.17 6.95 2.92 45.07 0.13 7.08 16 11 H 0.03 1.23 8.08 -2.38 -0.02 1.21 16 12 C -0.13 -4.68 5.46 30.62 0.17 -4.51 16 13 C -0.12 -3.38 6.10 30.81 0.19 -3.19 16 14 C 0.11 2.98 6.47 86.51 0.56 3.54 16 15 N -0.59 -18.83 2.97 -818.06 -2.43 -21.26 16 16 C 0.52 16.59 5.96 87.66 0.52 17.11 16 17 O -0.56 -19.28 14.81 -3.04 -0.05 -19.32 16 18 C 0.14 3.83 0.61 -11.82 -0.01 3.82 16 19 C -0.10 -2.96 3.93 -19.86 -0.08 -3.04 16 20 C -0.12 -3.35 9.07 22.27 0.20 -3.15 16 21 C -0.12 -3.05 10.05 22.27 0.22 -2.83 16 22 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 23 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 24 C -0.10 -3.05 8.34 22.27 0.19 -2.86 16 25 C -0.13 -2.83 5.88 31.86 0.19 -2.64 16 26 C -0.14 -2.46 7.16 32.05 0.23 -2.23 16 27 C 0.03 0.68 7.78 72.65 0.57 1.25 16 28 O -0.37 -10.25 6.45 -148.98 -0.96 -11.21 16 29 C 0.12 4.22 4.91 86.36 0.42 4.64 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.37 19.98 7.80 -92.71 -0.72 19.26 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.82 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 2.51 7.00 -2.38 -0.02 2.49 16 38 H 0.12 3.33 7.74 -2.91 -0.02 3.30 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.12 3.87 7.01 -2.91 -0.02 3.85 16 43 H 0.10 1.86 7.84 -2.39 -0.02 1.84 16 44 H 0.09 2.25 6.71 -2.39 -0.02 2.23 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.10 3.79 3.40 -2.38 -0.01 3.78 16 50 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.43 390.76 2.69 -63.74 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: 0.22 Total: 44.29 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.25 Total: -8.50 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -3.80 Total: -116.85 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -1.01 Total: -30.54 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.43 2.69 -63.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000797696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.446 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds