Wall clock time and date at job start Wed Apr 1 2020 02:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99907 * 2 1 4 4 H 1.48495 * 109.47275 * 273.08802 * 3 2 1 5 5 H 1.48502 * 109.46837 * 33.08970 * 3 2 1 6 6 H 1.48497 * 109.46968 * 153.08567 * 3 2 1 7 7 C 1.38803 * 120.00336 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99902 * 343.53984 * 7 2 1 9 9 N 1.36944 * 120.00508 * 163.25996 * 7 2 1 10 10 C 1.46921 * 120.63030 * 149.55495 * 9 7 2 11 11 C 1.53626 * 108.54019 * 126.37384 * 10 9 7 12 12 C 1.53040 * 109.24124 * 54.85601 * 11 10 9 13 13 C 1.53043 * 109.53714 * 298.50724 * 12 11 10 14 14 H 1.08995 * 109.49749 * 301.41830 * 13 12 11 15 15 N 1.46503 * 109.49323 * 181.31447 * 13 12 11 16 16 C 1.34783 * 119.99498 * 155.16828 * 15 13 12 17 17 O 1.21283 * 119.99978 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00100 * 180.02562 * 16 15 13 19 19 C 1.52999 * 109.47390 * 174.20247 * 18 16 15 20 20 H 1.09001 * 109.43042 * 52.79064 * 19 18 16 21 21 C 1.53069 * 109.43313 * 292.92389 * 19 18 16 22 22 C 1.53417 * 108.29990 * 191.73908 * 21 19 18 23 23 O 1.42822 * 108.37401 * 64.70975 * 22 21 19 24 24 C 1.35846 * 117.85708 * 310.80244 * 23 22 21 25 25 C 1.39152 * 118.49501 * 196.97355 * 24 23 22 26 26 C 1.37957 * 120.21582 * 180.43436 * 25 24 23 27 27 C 1.38293 * 119.95929 * 359.96287 * 26 25 24 28 28 C 1.38107 * 119.98115 * 359.93168 * 27 26 25 29 29 C 1.38372 * 121.80938 * 17.25129 * 24 23 22 30 30 C 1.46925 * 120.62585 * 329.83926 * 9 7 2 31 31 H 0.96996 * 120.00017 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.59009 * 246.20401 * 10 9 7 33 33 H 1.08994 * 109.58882 * 6.63475 * 10 9 7 34 34 H 1.09002 * 109.63628 * 294.86265 * 11 10 9 35 35 H 1.09000 * 109.43314 * 174.72446 * 11 10 9 36 36 H 1.09001 * 109.45902 * 178.48805 * 12 11 10 37 37 H 1.08996 * 109.45049 * 58.52487 * 12 11 10 38 38 H 0.96995 * 120.00337 * 335.16559 * 15 13 12 39 39 H 1.08997 * 109.46771 * 294.20770 * 18 16 15 40 40 H 1.09002 * 109.46848 * 54.20333 * 18 16 15 41 41 H 1.08996 * 109.70138 * 311.43867 * 21 19 18 42 42 H 1.09004 * 109.70194 * 72.04310 * 21 19 18 43 43 H 1.09000 * 109.68004 * 304.99173 * 22 21 19 44 44 H 1.09001 * 109.71312 * 184.44900 * 22 21 19 45 45 H 1.08004 * 119.89205 * 0.39338 * 25 24 23 46 46 H 1.08005 * 120.02400 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.01183 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.83779 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.58902 * 353.37174 * 30 9 7 50 50 H 1.09002 * 109.58280 * 113.79486 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4324 2.0842 -1.3980 5 1 1.4818 2.6329 0.7644 6 1 3.5788 1.4223 0.6337 7 6 2.0103 -1.2020 -0.0005 8 1 1.5035 -2.1184 0.2641 9 7 3.3362 -1.2270 -0.3421 10 6 4.2407 -2.2272 0.2411 11 6 4.9572 -2.9630 -0.9013 12 6 5.6503 -1.9398 -1.8039 13 6 4.6041 -1.0048 -2.4151 14 1 3.8813 -1.5899 -2.9838 15 7 5.2651 -0.0456 -3.3034 16 6 4.5750 0.5273 -4.3095 17 8 3.4071 0.2484 -4.4797 18 6 5.2550 1.5137 -5.2237 19 6 4.3017 1.9006 -6.3561 20 1 3.3539 2.2346 -5.9340 21 6 4.0582 0.6854 -7.2544 22 6 3.3506 1.1628 -8.5293 23 8 4.2389 2.0254 -9.2411 24 6 4.8451 3.0242 -8.5479 25 6 5.4159 4.0748 -9.2598 26 6 6.0483 5.1031 -8.5922 27 6 6.1153 5.0917 -7.2109 28 6 5.5480 4.0517 -6.5011 29 6 4.9114 3.0168 -7.1658 30 6 3.8824 -0.2503 -1.2941 31 1 -0.4850 0.8400 0.0004 32 1 4.9743 -1.7303 0.8762 33 1 3.6654 -2.9395 0.8323 34 1 4.2311 -3.5296 -1.4843 35 1 5.7003 -3.6431 -0.4849 36 1 6.1822 -2.4597 -2.6006 37 1 6.3583 -1.3569 -1.2149 38 1 6.1993 0.1773 -3.1675 39 1 5.5282 2.4045 -4.6582 40 1 6.1530 1.0604 -5.6437 41 1 5.0107 0.2236 -7.5140 42 1 3.4291 -0.0364 -6.7336 43 1 2.4443 1.7072 -8.2641 44 1 3.0950 0.3049 -9.1512 45 1 5.3643 4.0848 -10.3386 46 1 6.4907 5.9168 -9.1479 47 1 6.6105 5.8961 -6.6875 48 1 5.6013 4.0453 -5.4224 49 1 3.0706 0.3421 -1.7161 50 1 4.5872 0.4045 -0.7817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008178017.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:24 Heat of formation + Delta-G solvation = -33.538060 kcal Electronic energy + Delta-G solvation = -30765.535084 eV Core-core repulsion = 26757.971374 eV Total energy + Delta-G solvation = -4007.563710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.06850 -39.65748 -37.71897 -37.66172 -35.28438 -34.26441 -32.71384 -30.91263 -30.72328 -30.48330 -30.00573 -28.40862 -25.30016 -24.67829 -23.83835 -22.91443 -22.36670 -21.57335 -20.28480 -19.94238 -19.41741 -18.07679 -17.22975 -16.84376 -16.67966 -15.97499 -15.91074 -15.46064 -15.15142 -14.97213 -14.42412 -14.23110 -14.14016 -13.90317 -13.71992 -13.55525 -13.32595 -13.20265 -13.04132 -12.78748 -12.68386 -12.34137 -12.23230 -12.00089 -11.76770 -11.55565 -11.47631 -11.14361 -11.04412 -10.83924 -10.79303 -10.62681 -10.48039 -10.24332 -10.18346 -9.76248 -9.59748 -9.46439 -8.98393 -8.86316 -8.52919 -8.33182 -6.92807 -5.92620 -3.33609 1.10126 1.23073 2.83810 3.12565 3.30633 3.36758 3.46205 3.49424 3.57166 4.37593 4.41989 4.54528 4.56151 4.63237 4.85771 4.93837 5.01594 5.04344 5.07764 5.11659 5.17375 5.20871 5.24419 5.26350 5.34075 5.45503 5.47250 5.53543 5.60148 5.66663 5.78961 5.80749 5.93661 5.98051 6.01506 6.04982 6.10531 6.18531 6.24608 6.28278 6.33689 6.41858 6.54966 6.58815 6.61965 6.63137 6.78790 6.92158 7.27609 7.71104 8.00111 8.36023 8.45989 8.94719 9.73205 10.09974 11.23344 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.002900 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.779279 B = 9652.050889 C =10168.456986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.886 3.114 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.086 0.914 9 N -0.603 5.603 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.116 4.116 13 C 0.125 3.875 14 H 0.091 0.909 15 N -0.727 5.727 16 C 0.506 3.494 17 O -0.527 6.527 18 C -0.133 4.133 19 C -0.031 4.031 20 H 0.097 0.903 21 C -0.156 4.156 22 C 0.062 3.938 23 O -0.319 6.319 24 C 0.136 3.864 25 C -0.152 4.152 26 C -0.091 4.091 27 C -0.154 4.154 28 C -0.085 4.085 29 C -0.151 4.151 30 C 0.120 3.880 31 H 0.263 0.737 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.394 0.606 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.077 0.923 50 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.670 5.199 -16.014 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.103 0.897 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.109 0.891 15 N -0.378 5.378 16 C 0.292 3.708 17 O -0.403 6.403 18 C -0.173 4.173 19 C -0.050 4.050 20 H 0.115 0.885 21 C -0.194 4.194 22 C -0.013 4.013 23 O -0.233 6.233 24 C 0.090 3.910 25 C -0.171 4.171 26 C -0.109 4.109 27 C -0.172 4.172 28 C -0.103 4.103 29 C -0.152 4.152 30 C -0.007 4.007 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.227 0.773 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.085 0.915 44 H 0.126 0.874 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.095 0.905 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 15.634 5.008 -16.301 23.135 hybrid contribution 0.860 1.139 0.329 1.465 sum 16.494 6.148 -15.972 23.769 Atomic orbital electron populations 1.69790 1.05703 1.26550 1.53002 1.25327 0.95241 0.97659 0.98878 0.86892 0.79807 0.84650 0.76995 1.21525 1.23174 1.19593 1.18891 0.83082 0.94353 1.42819 0.89664 1.44282 1.06697 1.35295 1.46362 1.21082 0.92469 0.91591 0.92930 1.22077 0.99329 0.97397 0.98432 1.21676 0.97404 0.97490 0.98840 1.21754 0.94712 0.90195 0.91362 0.89127 1.46167 1.14455 1.45687 1.31497 1.20564 0.87310 0.81799 0.81130 1.90749 1.16037 1.61881 1.71628 1.21787 0.99598 0.99515 0.96366 1.19778 0.98999 0.92675 0.93541 0.88477 1.22361 1.02413 0.98546 0.96034 1.23022 0.91295 0.93139 0.93818 1.85967 1.58176 1.40807 1.38375 1.18712 0.94172 0.88312 0.89771 1.20590 1.02925 0.93295 1.00260 1.20912 0.97961 0.97554 0.94430 1.21023 1.02548 0.99360 0.94251 1.20997 0.96353 0.93005 0.99989 1.19849 1.04162 0.98584 0.92585 1.21709 0.97077 0.92392 0.89490 0.92734 0.95882 0.91604 0.91667 0.92201 0.92525 0.92162 0.77282 0.88481 0.88904 0.90904 0.87975 0.91510 0.87365 0.85391 0.85585 0.85925 0.85639 0.90481 0.95828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.71 13.97 55.49 0.78 -27.94 16 2 C 0.03 0.85 5.28 -17.43 -0.09 0.76 16 3 Si 0.89 23.33 24.32 -169.99 -4.13 19.19 16 4 H -0.29 -7.58 6.68 56.52 0.38 -7.20 16 5 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 6 H -0.27 -6.86 6.39 56.52 0.36 -6.50 16 7 C -0.26 -7.53 10.04 -15.06 -0.15 -7.68 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 N -0.60 -14.48 2.74 -172.06 -0.47 -14.95 16 10 C 0.15 2.79 6.54 -3.49 -0.02 2.76 16 11 C -0.13 -2.05 6.10 -26.39 -0.16 -2.21 16 12 C -0.12 -1.66 5.35 -26.69 -0.14 -1.80 16 13 C 0.13 2.22 2.60 -67.81 -0.18 2.04 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.73 -10.39 5.08 -53.69 -0.27 -10.66 16 16 C 0.51 7.77 7.49 -10.98 -0.08 7.69 16 17 O -0.53 -10.53 14.02 5.56 0.08 -10.45 16 18 C -0.13 -1.48 4.87 -27.88 -0.14 -1.61 16 19 C -0.03 -0.38 2.01 -91.70 -0.18 -0.57 16 20 H 0.10 1.39 7.79 -51.93 -0.40 0.98 16 21 C -0.16 -1.81 5.10 -26.48 -0.14 -1.94 16 22 C 0.06 0.66 7.03 37.37 0.26 0.92 16 23 O -0.32 -3.84 10.27 -19.26 -0.20 -4.03 16 24 C 0.14 1.61 6.47 -39.19 -0.25 1.36 16 25 C -0.15 -1.56 9.94 -39.35 -0.39 -1.95 16 26 C -0.09 -0.80 10.04 -39.66 -0.40 -1.20 16 27 C -0.15 -1.40 10.04 -39.61 -0.40 -1.80 16 28 C -0.09 -0.88 9.08 -39.53 -0.36 -1.24 16 29 C -0.15 -1.74 5.43 -104.44 -0.57 -2.31 16 30 C 0.12 2.67 3.74 -3.71 -0.01 2.66 16 31 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.39 4.14 8.60 -40.82 -0.35 3.79 16 39 H 0.10 0.94 6.19 -51.93 -0.32 0.62 16 40 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 42 H 0.10 1.35 6.65 -51.93 -0.35 1.01 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 46 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.13 1.13 6.36 -52.49 -0.33 0.79 16 49 H 0.08 2.00 4.61 -51.93 -0.24 1.77 16 50 H 0.02 0.52 6.87 -51.93 -0.36 0.16 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -34.96 383.99 -9.68 -44.64 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.85 Total: 4.53 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.40 Total: -6.12 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.03 Total: -53.55 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.12 Total: -14.48 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.13 Total: 19.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.96 -9.68 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008178017.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.107 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds