Wall clock time and date at job start Wed Apr 1 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99530 * 2 1 4 4 H 1.48496 * 109.47279 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46739 * 120.00053 * 3 2 1 6 6 H 1.48500 * 109.47159 * 239.99776 * 3 2 1 7 7 C 1.38812 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 164.79359 * 7 2 1 9 9 N 1.36929 * 120.00003 * 344.79395 * 7 2 1 10 10 C 1.46928 * 120.63290 * 331.85096 * 9 7 2 11 11 C 1.52756 * 109.01096 * 233.58403 * 10 9 7 12 12 C 1.53047 * 109.38433 * 305.59022 * 11 10 9 13 13 C 1.53041 * 109.53980 * 61.23601 * 12 11 10 14 14 H 1.09000 * 109.49689 * 58.58897 * 13 12 11 15 15 N 1.46499 * 109.49779 * 178.68644 * 13 12 11 16 16 C 1.34774 * 120.00049 * 204.83651 * 15 13 12 17 17 O 1.21284 * 119.99778 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99997 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46917 * 174.21053 * 18 16 15 20 20 H 1.09005 * 109.44262 * 53.89784 * 19 18 16 21 21 C 1.53075 * 109.44163 * 293.97440 * 19 18 16 22 22 C 1.53416 * 108.28005 * 191.67892 * 21 19 18 23 23 O 1.42819 * 108.38764 * 64.74238 * 22 21 19 24 24 C 1.35845 * 117.87748 * 310.93341 * 23 22 21 25 25 C 1.39152 * 118.50112 * 196.93541 * 24 23 22 26 26 C 1.37966 * 120.21307 * 180.22247 * 25 24 23 27 27 C 1.38295 * 119.96568 * 359.97438 * 26 25 24 28 28 C 1.38104 * 119.97594 * 359.91199 * 27 26 25 29 29 C 1.38372 * 121.80706 * 17.00132 * 24 23 22 30 30 C 1.46932 * 120.63034 * 152.13097 * 9 7 2 31 31 H 0.97004 * 120.00462 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58570 * 353.41825 * 10 9 7 33 33 H 1.09001 * 109.58863 * 113.84399 * 10 9 7 34 34 H 1.08995 * 109.57123 * 185.54949 * 11 10 9 35 35 H 1.09007 * 109.38632 * 65.50991 * 11 10 9 36 36 H 1.09000 * 109.45436 * 301.21744 * 12 11 10 37 37 H 1.08997 * 109.46298 * 181.26276 * 12 11 10 38 38 H 0.96992 * 119.99800 * 24.84044 * 15 13 12 39 39 H 1.09000 * 109.47385 * 294.20985 * 18 16 15 40 40 H 1.09002 * 109.47144 * 54.21137 * 18 16 15 41 41 H 1.08997 * 109.70522 * 311.38123 * 21 19 18 42 42 H 1.09007 * 109.69965 * 71.98888 * 21 19 18 43 43 H 1.09004 * 109.67858 * 184.46667 * 22 21 19 44 44 H 1.08999 * 109.68252 * 305.01374 * 22 21 19 45 45 H 1.07994 * 119.89157 * 0.20143 * 25 24 23 46 46 H 1.08001 * 120.01988 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.01103 * 179.97438 * 27 26 25 48 48 H 1.08003 * 119.83656 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.58215 * 246.15479 * 30 9 7 50 50 H 1.08996 * 109.58163 * 6.43861 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0620 -1.2183 -0.2459 9 7 1.3617 -2.3674 0.3100 10 6 0.1940 -2.3595 1.2018 11 6 0.4294 -3.3524 2.3385 12 6 0.7636 -4.7260 1.7521 13 6 2.0443 -4.6294 0.9199 14 1 2.8603 -4.2723 1.5481 15 7 2.3806 -5.9511 0.3848 16 6 3.6567 -6.2438 0.0648 17 8 4.5266 -5.4131 0.2202 18 6 4.0025 -7.6031 -0.4862 19 6 5.4757 -7.6266 -0.8983 20 1 6.0929 -7.3116 -0.0568 21 6 5.6912 -6.6704 -2.0741 22 6 7.0885 -6.9271 -2.6532 23 8 7.1169 -8.2493 -3.1923 24 6 6.6533 -9.2623 -2.4149 25 6 6.9911 -10.5686 -2.7554 26 6 6.5357 -11.6245 -1.9932 27 6 5.7413 -11.3857 -0.8866 28 6 5.4061 -10.0904 -0.5444 29 6 5.8606 -9.0263 -1.3056 30 6 1.8238 -3.6502 -0.2374 31 1 -0.4851 0.8400 0.0004 32 1 0.0560 -1.3600 1.6142 33 1 -0.6947 -2.6523 0.6428 34 1 -0.4697 -3.4270 2.9502 35 1 1.2605 -3.0076 2.9539 36 1 -0.0575 -5.0594 1.1175 37 1 0.9097 -5.4408 2.5619 38 1 1.6849 -6.6154 0.2608 39 1 3.8268 -8.3603 0.2780 40 1 3.3787 -7.8124 -1.3552 41 1 4.9369 -6.8532 -2.8394 42 1 5.6210 -5.6395 -1.7270 43 1 7.2973 -6.2044 -3.4421 44 1 7.8352 -6.8361 -1.8644 45 1 7.6114 -10.7563 -3.6192 46 1 6.8002 -12.6371 -2.2600 47 1 5.3841 -12.2118 -0.2897 48 1 4.7859 -9.9065 0.3204 49 1 1.0707 -4.0503 -0.9162 50 1 2.7595 -3.5015 -0.7764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008178485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:31 Heat of formation + Delta-G solvation = -39.337576 kcal Electronic energy + Delta-G solvation = -30289.432430 eV Core-core repulsion = 26281.617234 eV Total energy + Delta-G solvation = -4007.815196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.08552 -39.62347 -37.68200 -37.48173 -35.28365 -34.27010 -32.45729 -30.89713 -30.51602 -30.46369 -29.79332 -28.11239 -25.29681 -24.63832 -23.83689 -22.66020 -22.13655 -21.65951 -20.19232 -19.92484 -19.23847 -18.09460 -17.19531 -16.79713 -16.65500 -15.93335 -15.66325 -15.49342 -14.98805 -14.77183 -14.43245 -14.23293 -14.10179 -13.85065 -13.60942 -13.36668 -13.33070 -13.14688 -12.98124 -12.72294 -12.40891 -12.36590 -12.05336 -11.83075 -11.74372 -11.49695 -11.08718 -11.07309 -10.89475 -10.86705 -10.77957 -10.49799 -10.27916 -10.24678 -9.92874 -9.90861 -9.65198 -9.47825 -9.01759 -8.81697 -8.40881 -8.35339 -6.67011 -5.77949 -3.21576 1.06927 1.20325 2.81180 3.11879 3.33172 3.40562 3.45109 3.47957 3.54640 4.36143 4.39273 4.51467 4.56265 4.62417 4.84039 4.94545 5.00359 5.05720 5.10913 5.16271 5.25576 5.28003 5.31853 5.38517 5.49811 5.54175 5.58826 5.62412 5.64527 5.71403 5.76053 5.98221 6.04268 6.07108 6.08332 6.16105 6.23101 6.25130 6.30107 6.52403 6.56121 6.60693 6.67091 6.68583 6.83472 6.98597 7.26625 7.36585 7.66217 7.73760 7.81710 8.42008 8.48297 9.22348 9.84358 10.39863 11.30526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.002388 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.393123 B =11722.871473 C =13003.947671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.166 3.834 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.723 5.723 16 C 0.509 3.491 17 O -0.536 6.536 18 C -0.133 4.133 19 C -0.028 4.028 20 H 0.094 0.906 21 C -0.159 4.159 22 C 0.062 3.938 23 O -0.319 6.319 24 C 0.137 3.863 25 C -0.152 4.152 26 C -0.090 4.090 27 C -0.155 4.155 28 C -0.085 4.085 29 C -0.153 4.153 30 C 0.144 3.856 31 H 0.254 0.746 32 H 0.091 0.909 33 H 0.018 0.982 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.394 0.606 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.122 0.878 48 H 0.125 0.875 49 H 0.016 0.984 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 -23.133 -1.157 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.374 5.374 16 C 0.295 3.705 17 O -0.413 6.413 18 C -0.173 4.173 19 C -0.047 4.047 20 H 0.112 0.888 21 C -0.196 4.196 22 C -0.012 4.012 23 O -0.233 6.233 24 C 0.092 3.908 25 C -0.171 4.171 26 C -0.108 4.108 27 C -0.173 4.173 28 C -0.103 4.103 29 C -0.154 4.154 30 C 0.016 3.984 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.227 0.773 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.034 0.966 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.144 -22.337 -1.253 24.169 hybrid contribution -0.157 0.564 0.126 0.599 sum 8.987 -21.774 -1.127 23.582 Atomic orbital electron populations 1.70006 1.05212 1.25574 1.54236 1.25043 0.95353 0.98364 1.00892 0.86333 0.78856 0.83164 0.78219 1.21616 1.20976 1.20856 1.19174 0.92087 0.84387 1.42289 0.91663 1.43975 1.33440 1.01411 1.52245 1.20775 0.88283 0.98434 0.88443 1.22116 1.00326 0.95335 1.00180 1.21676 0.96606 0.98563 0.98436 1.21737 0.97449 0.81671 0.97150 0.89678 1.46176 1.08667 1.16623 1.65889 1.20512 0.82727 0.89323 0.77929 1.90706 1.47472 1.49878 1.53202 1.21787 0.97238 0.95709 1.02575 1.19748 0.95506 0.90436 0.98966 0.88752 1.22390 0.97078 1.02431 0.97687 1.23029 0.97445 0.81036 0.99716 1.85975 1.79464 1.15858 1.41999 1.18729 0.93474 0.88178 0.90461 1.20603 1.04025 0.89896 1.02566 1.20914 0.96852 0.98358 0.94697 1.21014 1.01034 0.96706 0.98553 1.20968 0.98738 0.91865 0.98771 1.19867 1.01743 0.96177 0.97577 1.21165 0.97844 0.86843 0.92547 0.93596 0.89052 0.96406 0.92720 0.92496 0.92289 0.93174 0.77256 0.88606 0.88840 0.90759 0.87756 0.87304 0.91642 0.85389 0.85608 0.85967 0.85694 0.96625 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.27 11.08 55.49 0.61 -25.66 16 2 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 3 Si 0.90 22.04 29.58 -169.99 -5.03 17.01 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 8 H 0.07 1.84 7.87 -52.48 -0.41 1.42 16 9 N -0.59 -14.88 3.00 -172.58 -0.52 -15.40 16 10 C 0.17 3.92 5.27 -3.93 -0.02 3.90 16 11 C -0.14 -2.59 6.06 -26.83 -0.16 -2.75 16 12 C -0.11 -1.81 5.36 -26.69 -0.14 -1.95 16 13 C 0.13 2.18 2.60 -67.81 -0.18 2.01 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 N -0.72 -9.72 5.08 -53.69 -0.27 -9.99 16 16 C 0.51 7.04 7.48 -10.99 -0.08 6.96 16 17 O -0.54 -9.58 13.96 5.55 0.08 -9.50 16 18 C -0.13 -1.32 4.85 -27.89 -0.14 -1.45 16 19 C -0.03 -0.30 2.01 -91.70 -0.18 -0.49 16 20 H 0.09 1.13 7.83 -51.93 -0.41 0.73 16 21 C -0.16 -1.81 5.09 -26.48 -0.13 -1.94 16 22 C 0.06 0.64 7.03 37.37 0.26 0.91 16 23 O -0.32 -3.75 10.27 -19.26 -0.20 -3.95 16 24 C 0.14 1.54 6.47 -39.19 -0.25 1.29 16 25 C -0.15 -1.48 9.94 -39.34 -0.39 -1.87 16 26 C -0.09 -0.73 10.04 -39.66 -0.40 -1.13 16 27 C -0.15 -1.25 10.05 -39.61 -0.40 -1.65 16 28 C -0.09 -0.76 9.08 -39.53 -0.36 -1.12 16 29 C -0.15 -1.61 5.43 -104.44 -0.57 -2.17 16 30 C 0.14 3.09 6.09 -3.71 -0.02 3.07 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.02 8.60 -40.82 -0.35 3.67 16 39 H 0.10 0.74 6.24 -51.93 -0.32 0.41 16 40 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 42 H 0.10 1.39 6.57 -51.92 -0.34 1.05 16 43 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.13 0.89 6.37 -52.48 -0.33 0.56 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 1.31 7.93 -51.93 -0.41 0.89 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -32.41 390.48 -10.75 -43.16 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.91 Total: 4.04 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.40 Total: -5.59 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.18 Total: -51.05 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.12 Total: -13.45 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.41 -10.75 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008178485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.818 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds