Wall clock time and date at job start Wed Apr 1 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99530 * 2 1 4 4 H 1.48496 * 109.47279 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46739 * 120.00053 * 3 2 1 6 6 H 1.48500 * 109.47159 * 239.99776 * 3 2 1 7 7 C 1.38812 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99639 * 164.79359 * 7 2 1 9 9 N 1.36929 * 120.00003 * 344.79395 * 7 2 1 10 10 C 1.46928 * 120.63290 * 331.85096 * 9 7 2 11 11 C 1.52756 * 109.01096 * 233.58403 * 10 9 7 12 12 C 1.53047 * 109.38433 * 305.59022 * 11 10 9 13 13 C 1.53041 * 109.53980 * 61.23601 * 12 11 10 14 14 H 1.09000 * 109.49689 * 58.58897 * 13 12 11 15 15 N 1.46499 * 109.49779 * 178.68644 * 13 12 11 16 16 C 1.34774 * 120.00049 * 204.83651 * 15 13 12 17 17 O 1.21284 * 119.99778 * 0.02562 * 16 15 13 18 18 C 1.50697 * 119.99997 * 180.02562 * 16 15 13 19 19 C 1.52998 * 109.46917 * 174.21053 * 18 16 15 20 20 H 1.09005 * 109.44262 * 53.89784 * 19 18 16 21 21 C 1.53075 * 109.44163 * 293.97440 * 19 18 16 22 22 C 1.53416 * 108.28005 * 191.67892 * 21 19 18 23 23 O 1.42819 * 108.38764 * 64.74238 * 22 21 19 24 24 C 1.35845 * 117.87748 * 310.93341 * 23 22 21 25 25 C 1.39152 * 118.50112 * 196.93541 * 24 23 22 26 26 C 1.37966 * 120.21307 * 180.22247 * 25 24 23 27 27 C 1.38295 * 119.96568 * 359.97438 * 26 25 24 28 28 C 1.38104 * 119.97594 * 359.91199 * 27 26 25 29 29 C 1.38372 * 121.80706 * 17.00132 * 24 23 22 30 30 C 1.46932 * 120.63034 * 152.13097 * 9 7 2 31 31 H 0.97004 * 120.00462 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58570 * 353.41825 * 10 9 7 33 33 H 1.09001 * 109.58863 * 113.84399 * 10 9 7 34 34 H 1.08995 * 109.57123 * 185.54949 * 11 10 9 35 35 H 1.09007 * 109.38632 * 65.50991 * 11 10 9 36 36 H 1.09000 * 109.45436 * 301.21744 * 12 11 10 37 37 H 1.08997 * 109.46298 * 181.26276 * 12 11 10 38 38 H 0.96992 * 119.99800 * 24.84044 * 15 13 12 39 39 H 1.09000 * 109.47385 * 294.20985 * 18 16 15 40 40 H 1.09002 * 109.47144 * 54.21137 * 18 16 15 41 41 H 1.08997 * 109.70522 * 311.38123 * 21 19 18 42 42 H 1.09007 * 109.69965 * 71.98888 * 21 19 18 43 43 H 1.09004 * 109.67858 * 184.46667 * 22 21 19 44 44 H 1.08999 * 109.68252 * 305.01374 * 22 21 19 45 45 H 1.07994 * 119.89157 * 0.20143 * 25 24 23 46 46 H 1.08001 * 120.01988 * 180.02562 * 26 25 24 47 47 H 1.07998 * 120.01103 * 179.97438 * 27 26 25 48 48 H 1.08003 * 119.83656 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.58215 * 246.15479 * 30 9 7 50 50 H 1.08996 * 109.58163 * 6.43861 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6966 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0620 -1.2183 -0.2459 9 7 1.3617 -2.3674 0.3100 10 6 0.1940 -2.3595 1.2018 11 6 0.4294 -3.3524 2.3385 12 6 0.7636 -4.7260 1.7521 13 6 2.0443 -4.6294 0.9199 14 1 2.8603 -4.2723 1.5481 15 7 2.3806 -5.9511 0.3848 16 6 3.6567 -6.2438 0.0648 17 8 4.5266 -5.4131 0.2202 18 6 4.0025 -7.6031 -0.4862 19 6 5.4757 -7.6266 -0.8983 20 1 6.0929 -7.3116 -0.0568 21 6 5.6912 -6.6704 -2.0741 22 6 7.0885 -6.9271 -2.6532 23 8 7.1169 -8.2493 -3.1923 24 6 6.6533 -9.2623 -2.4149 25 6 6.9911 -10.5686 -2.7554 26 6 6.5357 -11.6245 -1.9932 27 6 5.7413 -11.3857 -0.8866 28 6 5.4061 -10.0904 -0.5444 29 6 5.8606 -9.0263 -1.3056 30 6 1.8238 -3.6502 -0.2374 31 1 -0.4851 0.8400 0.0004 32 1 0.0560 -1.3600 1.6142 33 1 -0.6947 -2.6523 0.6428 34 1 -0.4697 -3.4270 2.9502 35 1 1.2605 -3.0076 2.9539 36 1 -0.0575 -5.0594 1.1175 37 1 0.9097 -5.4408 2.5619 38 1 1.6849 -6.6154 0.2608 39 1 3.8268 -8.3603 0.2780 40 1 3.3787 -7.8124 -1.3552 41 1 4.9369 -6.8532 -2.8394 42 1 5.6210 -5.6395 -1.7270 43 1 7.2973 -6.2044 -3.4421 44 1 7.8352 -6.8361 -1.8644 45 1 7.6114 -10.7563 -3.6192 46 1 6.8002 -12.6371 -2.2600 47 1 5.3841 -12.2118 -0.2897 48 1 4.7859 -9.9065 0.3204 49 1 1.0707 -4.0503 -0.9162 50 1 2.7595 -3.5015 -0.7764 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008178485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:29 Heat of formation + Delta-G solvation = -58.842667 kcal Electronic energy + Delta-G solvation = -30290.278234 eV Core-core repulsion = 26281.617234 eV Total energy + Delta-G solvation = -4008.661000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.90469 -40.80387 -39.03220 -38.40088 -36.29984 -35.75003 -34.14739 -32.35509 -31.69653 -31.23764 -30.92799 -29.34916 -27.27275 -25.52387 -24.66445 -23.90561 -23.68586 -22.85930 -21.36368 -20.98856 -20.60265 -18.87906 -18.71359 -18.15981 -17.49064 -17.15676 -16.82510 -16.58576 -16.49116 -15.87526 -15.69408 -15.43000 -15.27203 -15.04162 -14.92614 -14.56007 -14.38846 -14.25735 -14.16836 -13.98838 -13.88515 -13.47075 -13.37575 -13.02422 -12.79667 -12.73424 -12.59749 -12.47258 -12.25949 -12.14173 -11.98508 -11.93305 -11.75577 -11.65929 -11.55131 -11.33454 -11.25979 -10.73419 -10.61673 -10.06774 -9.71288 -9.08922 -8.69775 -7.91324 -5.38177 0.39222 0.51212 1.42875 1.45046 1.52335 1.70634 2.19601 2.36476 2.49570 2.84836 3.22754 3.50256 3.60635 3.69347 3.76229 3.85788 3.88193 4.07320 4.12162 4.17965 4.25092 4.28113 4.31017 4.34357 4.46158 4.48798 4.53708 4.58506 4.63177 4.73401 4.81036 4.82279 4.83732 4.92140 5.01794 5.07351 5.12306 5.12522 5.16095 5.21003 5.27790 5.41083 5.48942 5.56789 5.60283 5.61709 5.64429 5.76612 5.92309 6.35826 6.49391 6.66466 7.11639 7.37310 7.81551 8.30882 9.13876 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017481 B = 0.002388 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.393123 B =11722.871473 C =13003.947671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.045 4.045 3 Si 0.966 3.034 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.267 4.267 8 H 0.053 0.947 9 N -0.608 5.608 10 C 0.170 3.830 11 C -0.131 4.131 12 C -0.104 4.104 13 C 0.142 3.858 14 H 0.056 0.944 15 N -0.710 5.710 16 C 0.507 3.493 17 O -0.581 6.581 18 C -0.120 4.120 19 C -0.025 4.025 20 H 0.078 0.922 21 C -0.156 4.156 22 C 0.063 3.937 23 O -0.333 6.333 24 C 0.108 3.892 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.153 4.153 28 C -0.089 4.089 29 C -0.164 4.164 30 C 0.146 3.854 31 H 0.252 0.748 32 H 0.056 0.944 33 H 0.003 0.997 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.111 0.889 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.134 0.866 46 H 0.153 0.847 47 H 0.150 0.850 48 H 0.146 0.854 49 H 0.019 0.981 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -26.379 -0.238 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.212 1.212 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.071 0.929 9 N -0.332 5.332 10 C 0.045 3.955 11 C -0.170 4.170 12 C -0.142 4.142 13 C 0.036 3.964 14 H 0.074 0.926 15 N -0.362 5.362 16 C 0.295 3.705 17 O -0.461 6.461 18 C -0.159 4.159 19 C -0.043 4.043 20 H 0.096 0.904 21 C -0.193 4.193 22 C -0.012 4.012 23 O -0.247 6.247 24 C 0.063 3.937 25 C -0.184 4.184 26 C -0.106 4.106 27 C -0.171 4.171 28 C -0.107 4.107 29 C -0.164 4.164 30 C 0.019 3.981 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.022 0.978 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.139 0.861 44 H 0.083 0.917 45 H 0.152 0.848 46 H 0.171 0.829 47 H 0.168 0.832 48 H 0.163 0.837 49 H 0.036 0.964 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.666 -25.646 -0.335 27.073 hybrid contribution 0.022 1.505 -0.209 1.519 sum 8.688 -24.142 -0.543 25.663 Atomic orbital electron populations 1.70144 1.06332 1.26030 1.55069 1.25745 0.96193 1.01207 1.00957 0.85371 0.77690 0.79341 0.78234 1.21220 1.20548 1.20441 1.19357 0.91909 0.86064 1.42378 0.92929 1.44213 1.33833 1.01945 1.53213 1.20647 0.87216 0.98156 0.89479 1.21953 1.01313 0.95472 0.98278 1.21605 0.95691 0.97544 0.99363 1.21192 0.97605 0.82548 0.95094 0.92600 1.45943 1.09414 1.15423 1.65455 1.21252 0.82102 0.90353 0.76826 1.90704 1.48828 1.51646 1.54884 1.21776 0.96682 0.93565 1.03908 1.19652 0.95969 0.90808 0.97902 0.90416 1.22297 0.97775 1.01205 0.98044 1.23055 0.96800 0.81186 1.00146 1.85947 1.79908 1.16201 1.42659 1.19074 0.94692 0.88601 0.91316 1.20853 1.04450 0.89797 1.03256 1.21287 0.95981 0.99145 0.94191 1.21395 1.00107 0.97157 0.98403 1.21245 0.98695 0.91775 0.98987 1.19855 1.02480 0.96098 0.98009 1.21211 0.96237 0.86548 0.94075 0.93853 0.92580 0.97842 0.89790 0.93571 0.90670 0.89414 0.74733 0.85314 0.87092 0.90981 0.90304 0.86149 0.91672 0.84827 0.82946 0.83229 0.83665 0.96356 0.95238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.46 11.08 21.65 0.24 -55.22 16 2 C -0.05 -2.61 4.96 84.86 0.42 -2.19 16 3 Si 0.97 46.41 29.58 68.60 2.03 48.44 16 4 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 7 C -0.27 -15.54 9.59 84.03 0.81 -14.73 16 8 H 0.05 3.12 7.87 -2.91 -0.02 3.09 16 9 N -0.61 -31.77 3.00 -699.93 -2.10 -33.87 16 10 C 0.17 8.16 5.27 86.22 0.45 8.61 16 11 C -0.13 -4.66 6.06 30.53 0.19 -4.47 16 12 C -0.10 -2.99 5.36 30.62 0.16 -2.82 16 13 C 0.14 4.85 2.60 45.07 0.12 4.97 16 14 H 0.06 2.28 7.58 -2.39 -0.02 2.26 16 15 N -0.71 -17.71 5.08 -442.17 -2.25 -19.95 16 16 C 0.51 13.55 7.48 87.66 0.66 14.21 16 17 O -0.58 -21.38 13.96 -3.04 -0.04 -21.42 16 18 C -0.12 -2.11 4.85 29.85 0.14 -1.97 16 19 C -0.02 -0.52 2.01 -11.49 -0.02 -0.55 16 20 H 0.08 1.90 7.83 -2.38 -0.02 1.88 16 21 C -0.16 -3.69 5.09 30.76 0.16 -3.53 16 22 C 0.06 1.35 7.03 72.12 0.51 1.86 16 23 O -0.33 -7.93 10.27 -91.81 -0.94 -8.87 16 24 C 0.11 2.37 6.47 22.52 0.15 2.51 16 25 C -0.17 -2.97 9.94 22.42 0.22 -2.75 16 26 C -0.09 -1.18 10.04 22.22 0.22 -0.95 16 27 C -0.15 -1.91 10.05 22.25 0.22 -1.68 16 28 C -0.09 -1.32 9.08 22.30 0.20 -1.12 16 29 C -0.16 -3.22 5.43 -19.75 -0.11 -3.32 16 30 C 0.15 6.43 6.09 86.36 0.53 6.95 16 31 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.06 3.07 6.00 -2.39 -0.01 3.05 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 37 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.42 6.97 8.60 -92.71 -0.80 6.17 16 39 H 0.13 1.45 6.24 -2.39 -0.01 1.44 16 40 H 0.11 1.64 8.09 -2.39 -0.02 1.62 16 41 H 0.07 1.69 8.06 -2.39 -0.02 1.67 16 42 H 0.08 2.27 6.57 -2.38 -0.02 2.26 16 43 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 45 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 48 H 0.15 1.46 6.37 -2.91 -0.02 1.45 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.03 1.42 7.93 -2.39 -0.02 1.40 16 Total: -1.00 -74.75 390.48 2.11 -72.65 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.15 Total: 19.22 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: 5.03 Total: -0.97 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.11 Total: -109.04 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.99 Total: -30.29 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -74.75 2.11 -72.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008178485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.804 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds