Wall clock time and date at job start Wed Apr 1 2020 02:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86807 * 119.99876 * 2 1 4 4 H 1.48493 * 109.47078 * 274.07124 * 3 2 1 5 5 H 1.48503 * 109.46917 * 34.07449 * 3 2 1 6 6 H 1.48502 * 109.47124 * 154.06832 * 3 2 1 7 7 C 1.38810 * 120.00351 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00373 * 197.50592 * 7 2 1 9 9 N 1.36940 * 119.99728 * 17.49520 * 7 2 1 10 10 C 1.46930 * 120.63003 * 27.98743 * 9 7 2 11 11 C 1.53191 * 108.77357 * 126.36766 * 10 9 7 12 12 C 1.53038 * 109.31380 * 54.63404 * 11 10 9 13 13 C 1.53043 * 109.53999 * 298.63474 * 12 11 10 14 14 H 1.09004 * 109.52257 * 301.39773 * 13 12 11 15 15 N 1.46498 * 109.49597 * 181.31465 * 13 12 11 16 16 C 1.34781 * 119.99398 * 155.16523 * 15 13 12 17 17 O 1.21276 * 120.00426 * 359.97438 * 16 15 13 18 18 C 1.50707 * 119.99652 * 180.02562 * 16 15 13 19 19 C 1.52994 * 109.47013 * 180.02562 * 18 16 15 20 20 H 1.09008 * 109.33403 * 304.67138 * 19 18 16 21 21 O 1.42640 * 109.25118 * 64.07602 * 19 18 16 22 22 C 1.43210 * 113.18261 * 171.71824 * 21 19 18 23 23 C 1.52966 * 108.65162 * 289.65375 * 22 21 19 24 24 C 1.50734 * 109.76622 * 49.10972 * 23 22 21 25 25 C 1.38596 * 118.77225 * 162.99201 * 24 23 22 26 26 C 1.38075 * 120.27843 * 179.81122 * 25 24 23 27 27 C 1.38256 * 119.86203 * 359.96824 * 26 25 24 28 28 C 1.38057 * 119.89873 * 0.09124 * 27 26 25 29 29 C 1.37907 * 121.35028 * 342.93870 * 24 23 22 30 30 C 1.46928 * 120.63104 * 207.96480 * 9 7 2 31 31 H 0.97000 * 120.00441 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.58591 * 246.15440 * 10 9 7 33 33 H 1.08996 * 109.58330 * 6.57977 * 10 9 7 34 34 H 1.08996 * 109.50111 * 174.58890 * 11 10 9 35 35 H 1.09003 * 109.49625 * 294.65112 * 11 10 9 36 36 H 1.09006 * 109.46139 * 178.61641 * 12 11 10 37 37 H 1.08998 * 109.46131 * 58.65641 * 12 11 10 38 38 H 0.96991 * 120.00241 * 335.15861 * 15 13 12 39 39 H 1.08999 * 109.47036 * 59.99419 * 18 16 15 40 40 H 1.08997 * 109.46890 * 299.99512 * 18 16 15 41 41 H 1.09000 * 109.63311 * 169.85577 * 22 21 19 42 42 H 1.08994 * 109.63949 * 49.45798 * 22 21 19 43 43 H 1.09000 * 109.42284 * 169.20060 * 23 22 21 44 44 H 1.09004 * 109.42198 * 289.07619 * 23 22 21 45 45 H 1.07994 * 119.85940 * 359.82548 * 25 24 23 46 46 H 1.07996 * 120.06380 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.05156 * 180.11282 * 27 26 25 48 48 H 1.08000 * 119.85175 * 180.02562 * 28 27 26 49 49 H 1.08998 * 109.58434 * 113.84537 * 30 9 7 50 50 H 1.09003 * 109.70049 * 353.48924 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4115 2.0962 -1.3965 5 1 1.4933 2.6263 0.7844 6 1 3.5881 1.4170 0.6123 7 6 2.0103 -1.2021 -0.0005 8 1 3.0527 -1.2239 0.2808 9 7 1.3731 -2.3604 -0.3576 10 6 0.2347 -2.3330 -1.2861 11 6 0.5144 -3.3037 -2.4378 12 6 0.8272 -4.6890 -1.8675 13 6 2.0771 -4.6102 -0.9879 14 1 2.9156 -4.2415 -1.5788 15 7 2.3938 -5.9426 -0.4678 16 6 3.6576 -6.2427 -0.1080 17 8 4.5326 -5.4098 -0.2153 18 6 3.9835 -7.6136 0.4265 19 6 5.4753 -7.6905 0.7572 20 1 6.0551 -7.4229 -0.1262 21 8 5.7720 -6.7725 1.8078 22 6 7.1047 -6.9071 2.3144 23 6 7.2031 -8.2224 3.0891 24 6 6.6344 -9.3458 2.2604 25 6 6.9406 -10.6521 2.6078 26 6 6.4333 -11.7051 1.8727 27 6 5.6159 -11.4553 0.7859 28 6 5.3114 -10.1544 0.4385 29 6 5.8219 -9.0961 1.1744 30 6 1.8151 -3.6543 0.1802 31 1 -0.4851 0.8400 0.0004 32 1 -0.6712 -2.6384 -0.7627 33 1 0.1091 -1.3247 -1.6804 34 1 -0.3621 -3.3652 -3.0828 35 1 1.3670 -2.9467 -3.0156 36 1 1.0025 -5.3875 -2.6858 37 1 -0.0163 -5.0346 -1.2698 38 1 1.6940 -6.6088 -0.3823 39 1 3.7382 -8.3642 -0.3248 40 1 3.4016 -7.7993 1.3292 41 1 7.3300 -6.0730 2.9789 42 1 7.8125 -6.9164 1.4856 43 1 8.2484 -8.4324 3.3156 44 1 6.6406 -8.1383 4.0190 45 1 7.5784 -10.8473 3.4571 46 1 6.6745 -12.7216 2.1461 47 1 5.2160 -12.2767 0.2099 48 1 4.6725 -9.9601 -0.4103 49 1 1.0380 -4.0675 0.8232 50 1 2.7316 -3.5197 0.7548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009265662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:10 Heat of formation + Delta-G solvation = -40.806616 kcal Electronic energy + Delta-G solvation = -30267.453153 eV Core-core repulsion = 26259.574255 eV Total energy + Delta-G solvation = -4007.878898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.74819 -39.40476 -37.73906 -37.15435 -34.22270 -33.91308 -32.52081 -32.26835 -30.43330 -30.30550 -29.18466 -27.92361 -25.22773 -24.59864 -23.98981 -22.52907 -22.04918 -21.49553 -20.26555 -19.97446 -19.21780 -17.62544 -16.81197 -16.71386 -16.48563 -15.92849 -15.64847 -15.41250 -14.83825 -14.67951 -14.49960 -14.23750 -14.01010 -13.77569 -13.50773 -13.42141 -13.32133 -13.08314 -12.67961 -12.57315 -12.33758 -12.31453 -12.22536 -11.98596 -11.75160 -11.56997 -11.17769 -11.02938 -10.82658 -10.77299 -10.75031 -10.21114 -10.16786 -9.87188 -9.84413 -9.71821 -9.56387 -9.38373 -9.05944 -8.88155 -8.71664 -8.33713 -6.61289 -5.73012 -3.14815 1.00558 1.05250 2.96795 3.34259 3.43902 3.47859 3.50604 3.54244 3.68526 4.35617 4.36903 4.51471 4.57749 4.62774 4.80468 4.84452 4.97851 5.02385 5.12054 5.12992 5.26084 5.29220 5.36166 5.42069 5.45436 5.56226 5.59462 5.66634 5.67646 5.68799 5.74240 5.78292 5.81890 6.12859 6.14362 6.19026 6.22538 6.28607 6.30327 6.57906 6.65847 6.66801 6.75751 6.77720 6.91435 7.08768 7.09906 7.40369 7.68593 7.85877 7.89353 8.50497 8.60453 9.28048 9.90472 10.46369 11.35810 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.002393 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.331580 B =11700.171439 C =12962.196420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.127 3.873 14 H 0.084 0.916 15 N -0.726 5.726 16 C 0.511 3.489 17 O -0.523 6.523 18 C -0.133 4.133 19 C 0.148 3.852 20 H 0.079 0.921 21 O -0.352 6.352 22 C 0.060 3.940 23 C -0.118 4.118 24 C -0.069 4.069 25 C -0.119 4.119 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.111 4.111 29 C -0.112 4.112 30 C 0.143 3.857 31 H 0.253 0.747 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.393 0.607 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.016 0.984 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.038 -25.144 1.408 27.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.022 3.978 14 H 0.103 0.897 15 N -0.378 5.378 16 C 0.296 3.704 17 O -0.398 6.398 18 C -0.173 4.173 19 C 0.090 3.910 20 H 0.097 0.903 21 O -0.270 6.270 22 C -0.017 4.017 23 C -0.155 4.155 24 C -0.070 4.070 25 C -0.137 4.137 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.129 4.129 29 C -0.112 4.112 30 C 0.015 3.985 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.226 0.774 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.034 0.966 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.446 -24.213 1.425 26.409 hybrid contribution 0.153 0.107 0.041 0.191 sum 10.599 -24.106 1.465 26.374 Atomic orbital electron populations 1.70045 1.05225 1.25392 1.54291 1.25024 0.95294 0.98385 1.01024 0.86259 0.79276 0.83631 0.77587 1.21481 1.21834 1.20303 1.19255 0.92877 0.84723 1.40865 0.91529 1.44011 1.36121 1.01152 1.49813 1.20830 0.88696 0.98482 0.87821 1.22179 1.00397 0.95290 1.00089 1.21672 0.96906 0.98468 0.98185 1.21695 0.97663 0.81488 0.96976 0.89742 1.46137 1.09438 1.15778 1.66411 1.20317 0.82799 0.89341 0.77959 1.90748 1.46659 1.49730 1.52661 1.21803 0.95950 0.96361 1.03219 1.20497 0.95032 0.84471 0.91048 0.90320 1.88201 1.30128 1.56390 1.52269 1.22575 0.84858 0.96744 0.97543 1.21191 1.01462 0.93758 0.99063 1.19549 0.97257 0.94713 0.95431 1.21082 1.00647 0.91938 1.00070 1.21118 0.97841 0.98919 0.95811 1.21099 0.98752 0.96627 0.97614 1.21090 0.99892 0.92207 0.99708 1.20285 0.98474 0.96191 0.96267 1.21180 0.97915 0.86712 0.92669 0.93734 0.96340 0.89366 0.92796 0.92461 0.93200 0.92313 0.77406 0.87702 0.88003 0.88141 0.92716 0.89783 0.89560 0.86020 0.86047 0.85904 0.85643 0.96632 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 11.22 55.49 0.62 -26.14 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 3 Si 0.90 22.49 29.59 -169.99 -5.03 17.46 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -7.13 9.58 -15.06 -0.14 -7.27 16 8 H 0.07 1.94 7.89 -52.49 -0.41 1.53 16 9 N -0.59 -15.34 2.99 -172.32 -0.52 -15.85 16 10 C 0.17 4.03 5.31 -3.71 -0.02 4.01 16 11 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 12 C -0.11 -1.86 5.35 -26.69 -0.14 -2.00 16 13 C 0.13 2.33 2.60 -67.81 -0.18 2.15 16 14 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 15 N -0.73 -10.49 5.08 -53.68 -0.27 -10.76 16 16 C 0.51 7.84 7.67 -10.98 -0.08 7.76 16 17 O -0.52 -10.50 15.04 -9.90 -0.15 -10.65 16 18 C -0.13 -1.46 5.10 -27.88 -0.14 -1.60 16 19 C 0.15 1.79 2.29 -27.90 -0.06 1.73 16 20 H 0.08 1.02 7.96 -51.92 -0.41 0.61 16 21 O -0.35 -5.04 9.59 -50.69 -0.49 -5.53 16 22 C 0.06 0.65 6.84 37.14 0.25 0.90 16 23 C -0.12 -1.03 6.01 -27.88 -0.17 -1.20 16 24 C -0.07 -0.68 5.78 -104.59 -0.60 -1.29 16 25 C -0.12 -0.99 9.67 -39.51 -0.38 -1.38 16 26 C -0.12 -0.91 10.05 -39.63 -0.40 -1.30 16 27 C -0.12 -0.95 10.05 -39.64 -0.40 -1.34 16 28 C -0.11 -0.96 9.09 -39.50 -0.36 -1.32 16 29 C -0.11 -1.16 5.46 -104.61 -0.57 -1.73 16 30 C 0.14 3.22 6.09 -3.71 -0.02 3.20 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 4.28 8.60 -40.82 -0.35 3.93 16 39 H 0.10 0.80 6.34 -51.93 -0.33 0.47 16 40 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 47 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.13 0.85 6.46 -52.49 -0.34 0.51 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 1.44 7.94 -51.93 -0.41 1.03 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -34.65 393.57 -11.59 -46.24 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -8.02 Total: 2.87 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -3.67 Total: -3.56 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.17 Total: -52.76 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.64 Total: -16.18 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.65 -11.59 -46.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009265662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.434 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds