Wall clock time and date at job start Wed Apr 1 2020 03:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48498 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47326 * 300.00054 * 3 2 1 6 6 H 1.48498 * 109.46833 * 60.00129 * 3 2 1 7 7 C 1.38807 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00124 * 197.37715 * 7 2 1 9 9 N 1.36946 * 120.00218 * 17.10850 * 7 2 1 10 10 C 1.46917 * 120.62947 * 208.08043 * 9 7 2 11 11 C 1.53193 * 108.77598 * 233.58115 * 10 9 7 12 12 C 1.53037 * 109.31224 * 305.36944 * 11 10 9 13 13 C 1.53033 * 109.54254 * 61.35914 * 12 11 10 14 14 H 1.09010 * 109.49237 * 58.58712 * 13 12 11 15 15 N 1.46497 * 109.50381 * 178.68237 * 13 12 11 16 16 C 1.34771 * 120.00604 * 205.00316 * 15 13 12 17 17 O 1.21283 * 120.00119 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00348 * 180.02562 * 16 15 13 19 19 C 1.50694 * 109.82635 * 84.43054 * 18 16 15 20 20 C 1.38242 * 119.99944 * 90.42571 * 19 18 16 21 21 C 1.38229 * 119.99807 * 179.74458 * 20 19 18 22 22 C 1.38233 * 120.00115 * 0.55678 * 21 20 19 23 23 C 1.38231 * 119.99897 * 359.69822 * 22 21 20 24 24 C 1.38230 * 120.00193 * 270.70369 * 19 18 16 25 25 C 1.54380 * 109.83272 * 205.41409 * 18 16 15 26 26 C 1.55310 * 102.25518 * 98.15262 * 25 18 16 27 27 C 1.54946 * 100.93766 * 34.13570 * 26 25 18 28 28 O 1.43244 * 109.82669 * 323.54361 * 18 16 15 29 29 C 1.46923 * 120.62752 * 27.79605 * 9 7 2 30 30 H 0.97003 * 119.99669 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.59296 * 353.37292 * 10 9 7 32 32 H 1.09001 * 109.59009 * 113.79299 * 10 9 7 33 33 H 1.09006 * 109.49508 * 65.31714 * 11 10 9 34 34 H 1.09004 * 109.49754 * 185.38399 * 11 10 9 35 35 H 1.09003 * 109.46461 * 181.38580 * 12 11 10 36 36 H 1.09005 * 109.45955 * 301.34247 * 12 11 10 37 37 H 0.97004 * 119.99556 * 25.00173 * 15 13 12 38 38 H 1.07995 * 119.99557 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.99962 * 180.27497 * 21 20 19 40 40 H 1.08008 * 119.99990 * 179.72346 * 22 21 20 41 41 H 1.08000 * 119.99888 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00086 * 0.02562 * 24 19 18 43 43 H 1.08994 * 110.85070 * 216.34489 * 25 18 16 44 44 H 1.09003 * 110.84639 * 339.96652 * 25 18 16 45 45 H 1.08999 * 111.12443 * 276.21662 * 26 25 18 46 46 H 1.09002 * 111.16145 * 152.06908 * 26 25 18 47 47 H 1.09005 * 110.30576 * 204.64196 * 27 26 25 48 48 H 1.08997 * 110.39456 * 82.51674 * 27 26 25 49 49 H 1.08997 * 109.58831 * 246.20630 * 29 9 7 50 50 H 1.09002 * 109.59001 * 6.63029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2799 9 7 1.3709 -2.3620 -0.3478 10 6 1.8144 -3.6533 0.1949 11 6 2.0698 -4.6158 -0.9692 12 6 0.8156 -4.6983 -1.8422 13 6 0.5012 -3.3159 -2.4185 14 1 1.3517 -2.9632 -3.0022 15 7 -0.6811 -3.4022 -3.2792 16 6 -0.8639 -2.5021 -4.2655 17 8 -0.0493 -1.6209 -4.4409 18 6 -2.0805 -2.5906 -5.1504 19 6 -3.2446 -1.8985 -4.4896 20 6 -3.4733 -0.5553 -4.7229 21 6 -4.5443 0.0783 -4.1209 22 6 -5.3798 -0.6286 -3.2764 23 6 -5.1481 -1.9705 -3.0390 24 6 -4.0805 -2.6054 -3.6455 25 6 -1.7842 -1.9331 -6.5155 26 6 -1.4383 -3.1593 -7.4038 27 6 -2.3818 -4.2322 -6.8042 28 8 -2.4059 -3.9643 -5.3932 29 6 0.2246 -2.3380 -1.2665 30 1 -0.4850 0.8401 -0.0004 31 1 2.7344 -3.5145 0.7628 32 1 1.0402 -4.0622 0.8440 33 1 2.9055 -4.2508 -1.5665 34 1 2.3071 -5.6051 -0.5779 35 1 0.9861 -5.4015 -2.6575 36 1 -0.0253 -5.0398 -1.2385 37 1 -1.3325 -4.1072 -3.1392 38 1 -2.8179 -0.0020 -5.3791 39 1 -4.7255 1.1267 -4.3067 40 1 -6.2140 -0.1325 -2.8025 41 1 -5.8011 -2.5228 -2.3795 42 1 -3.8990 -3.6537 -3.4594 43 1 -2.6644 -1.4147 -6.8956 44 1 -0.9342 -1.2546 -6.4429 45 1 -0.3931 -3.4461 -7.2876 46 1 -1.6765 -2.9670 -8.4499 47 1 -1.9874 -5.2307 -6.9930 48 1 -3.3827 -4.1356 -7.2249 49 1 -0.6767 -2.6418 -0.7342 50 1 0.0952 -1.3310 -1.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009329482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:40 Heat of formation + Delta-G solvation = -32.367080 kcal Electronic energy + Delta-G solvation = -31959.961200 eV Core-core repulsion = 27952.448267 eV Total energy + Delta-G solvation = -4007.512932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.89542 -38.73183 -38.26397 -37.07421 -34.12771 -32.70705 -32.53449 -31.93983 -30.70544 -29.98500 -28.99197 -27.93261 -25.21474 -24.06913 -22.95460 -22.44464 -22.06096 -21.39844 -20.99409 -19.66584 -19.17672 -17.71295 -17.28181 -16.71263 -16.05380 -15.69011 -15.32786 -15.13833 -14.68424 -14.60081 -14.17446 -14.00953 -13.83064 -13.65476 -13.49905 -13.32695 -13.09975 -12.87734 -12.57140 -12.31354 -12.27093 -12.04432 -11.94980 -11.83059 -11.40856 -11.28021 -10.98193 -10.93415 -10.82634 -10.72243 -10.68304 -10.45523 -10.33052 -10.17859 -9.89997 -9.88437 -9.47124 -9.26004 -8.79798 -8.57941 -8.44447 -8.38558 -6.60527 -5.70442 -3.13997 1.35854 1.52040 2.98459 3.44229 3.49222 3.52145 3.53236 3.54436 3.92392 4.36221 4.52898 4.57924 4.75878 4.92466 5.01249 5.08116 5.09238 5.19763 5.29463 5.41251 5.45700 5.46761 5.52796 5.58310 5.60354 5.62734 5.68245 5.69481 5.77641 5.88984 5.98359 6.02674 6.11234 6.13177 6.20742 6.37879 6.46432 6.49814 6.54192 6.55344 6.60100 6.74945 6.79932 6.82693 7.00173 7.04092 7.07008 7.36281 7.78887 7.88191 8.01749 8.52778 8.67533 9.27820 9.91939 10.47001 11.37097 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.004363 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.699010 B = 6416.727565 C = 7601.259996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.115 3.885 14 H 0.081 0.919 15 N -0.704 5.704 16 C 0.521 3.479 17 O -0.528 6.528 18 C 0.138 3.862 19 C -0.092 4.092 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.140 4.140 26 C -0.156 4.156 27 C 0.052 3.948 28 O -0.363 6.363 29 C 0.169 3.831 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.063 0.937 49 H 0.017 0.983 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.950 -8.918 -13.541 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.010 3.990 14 H 0.099 0.901 15 N -0.353 5.353 16 C 0.305 3.695 17 O -0.404 6.404 18 C 0.095 3.905 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.140 4.140 24 C -0.106 4.106 25 C -0.177 4.177 26 C -0.194 4.194 27 C -0.025 4.025 28 O -0.282 6.282 29 C 0.042 3.958 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.230 0.770 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.035 0.965 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.478 -8.286 -13.465 18.434 hybrid contribution 0.016 0.653 0.009 0.653 sum -9.462 -7.633 -13.457 18.135 Atomic orbital electron populations 1.70035 1.05283 1.25347 1.53422 1.25032 0.95247 0.98424 1.00559 0.86263 0.79431 0.84120 0.77208 1.20205 1.21465 1.21780 1.19186 0.92689 0.84781 1.41899 0.91582 1.43995 1.35925 1.01716 1.49520 1.20955 0.97684 0.86938 0.92849 1.22000 0.96984 0.99279 0.98759 1.21666 0.98873 0.96080 0.98728 1.22090 0.87085 0.96928 0.92903 0.90126 1.45965 1.26014 1.30999 1.32309 1.20151 0.86101 0.82108 0.81172 1.90732 1.44301 1.34291 1.71095 1.20953 0.91165 0.82962 0.95446 1.19644 0.95931 0.94307 0.99403 1.21019 0.97257 0.93688 0.99834 1.21082 0.95328 0.99778 0.97696 1.21172 0.99513 0.94558 0.97946 1.21116 0.98080 0.94993 0.99817 1.20925 0.94318 1.00106 0.95265 1.23215 1.04204 0.98837 0.91477 1.23285 1.00880 0.94981 1.00230 1.23428 0.98999 0.99241 0.80809 1.88394 1.90812 1.24813 1.24227 1.21157 0.88558 0.98814 0.87227 0.93760 0.92662 0.96460 0.92170 0.92665 0.93107 0.92285 0.76982 0.85726 0.85957 0.86150 0.85983 0.85609 0.89482 0.87577 0.90122 0.89548 0.89431 0.91875 0.96536 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 11.18 55.49 0.62 -26.70 16 2 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 3 Si 0.90 22.89 29.59 -169.99 -5.03 17.86 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.26 -7.34 9.58 -15.06 -0.14 -7.49 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -15.36 2.99 -172.06 -0.51 -15.88 16 10 C 0.14 3.03 6.51 -3.72 -0.02 3.01 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 12 C -0.12 -1.96 5.35 -26.69 -0.14 -2.10 16 13 C 0.12 2.36 2.62 -67.59 -0.18 2.18 16 14 H 0.08 1.86 7.58 -51.92 -0.39 1.47 16 15 N -0.70 -12.62 4.99 -53.47 -0.27 -12.89 16 16 C 0.52 9.73 6.70 -10.99 -0.07 9.66 16 17 O -0.53 -11.92 15.23 5.55 0.08 -11.83 16 18 C 0.14 2.01 0.98 -92.20 -0.09 1.92 16 19 C -0.09 -1.37 4.80 -104.63 -0.50 -1.87 16 20 C -0.10 -1.44 8.75 -39.58 -0.35 -1.79 16 21 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 22 C -0.11 -1.44 10.05 -39.59 -0.40 -1.83 16 23 C -0.12 -1.58 10.05 -39.59 -0.40 -1.97 16 24 C -0.09 -1.24 9.36 -39.59 -0.37 -1.61 16 25 C -0.14 -1.73 4.99 -24.78 -0.12 -1.85 16 26 C -0.16 -1.53 7.16 -24.48 -0.18 -1.71 16 27 C 0.05 0.50 7.78 38.18 0.30 0.79 16 28 O -0.36 -4.66 9.11 -35.23 -0.32 -4.98 16 29 C 0.17 4.28 4.91 -3.49 -0.02 4.27 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.40 6.16 8.10 -40.82 -0.33 5.83 16 38 H 0.12 1.69 6.85 -52.49 -0.36 1.33 16 39 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.13 1.63 7.54 -52.48 -0.40 1.23 16 43 H 0.09 0.93 6.89 -51.93 -0.36 0.57 16 44 H 0.11 1.51 6.76 -51.93 -0.35 1.16 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 2.81 6.04 -51.93 -0.31 2.50 16 LS Contribution 394.52 15.07 5.95 5.95 Total: -1.00 -33.96 394.52 -10.77 -44.73 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.96 Total: 8.48 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -3.33 Total: -4.74 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.16 Total: -55.46 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.24 Total: -16.82 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.96 -10.77 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009329482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.365 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds