Wall clock time and date at job start Wed Apr 1 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48498 * 109.46977 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47326 * 300.00054 * 3 2 1 6 6 H 1.48498 * 109.46833 * 60.00129 * 3 2 1 7 7 C 1.38807 * 119.99670 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00124 * 197.37715 * 7 2 1 9 9 N 1.36946 * 120.00218 * 17.10850 * 7 2 1 10 10 C 1.46917 * 120.62947 * 208.08043 * 9 7 2 11 11 C 1.53193 * 108.77598 * 233.58115 * 10 9 7 12 12 C 1.53037 * 109.31224 * 305.36944 * 11 10 9 13 13 C 1.53033 * 109.54254 * 61.35914 * 12 11 10 14 14 H 1.09010 * 109.49237 * 58.58712 * 13 12 11 15 15 N 1.46497 * 109.50381 * 178.68237 * 13 12 11 16 16 C 1.34771 * 120.00604 * 205.00316 * 15 13 12 17 17 O 1.21283 * 120.00119 * 0.02562 * 16 15 13 18 18 C 1.50701 * 120.00348 * 180.02562 * 16 15 13 19 19 C 1.50694 * 109.82635 * 84.43054 * 18 16 15 20 20 C 1.38242 * 119.99944 * 90.42571 * 19 18 16 21 21 C 1.38229 * 119.99807 * 179.74458 * 20 19 18 22 22 C 1.38233 * 120.00115 * 0.55678 * 21 20 19 23 23 C 1.38231 * 119.99897 * 359.69822 * 22 21 20 24 24 C 1.38230 * 120.00193 * 270.70369 * 19 18 16 25 25 C 1.54380 * 109.83272 * 205.41409 * 18 16 15 26 26 C 1.55310 * 102.25518 * 98.15262 * 25 18 16 27 27 C 1.54946 * 100.93766 * 34.13570 * 26 25 18 28 28 O 1.43244 * 109.82669 * 323.54361 * 18 16 15 29 29 C 1.46923 * 120.62752 * 27.79605 * 9 7 2 30 30 H 0.97003 * 119.99669 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.59296 * 353.37292 * 10 9 7 32 32 H 1.09001 * 109.59009 * 113.79299 * 10 9 7 33 33 H 1.09006 * 109.49508 * 65.31714 * 11 10 9 34 34 H 1.09004 * 109.49754 * 185.38399 * 11 10 9 35 35 H 1.09003 * 109.46461 * 181.38580 * 12 11 10 36 36 H 1.09005 * 109.45955 * 301.34247 * 12 11 10 37 37 H 0.97004 * 119.99556 * 25.00173 * 15 13 12 38 38 H 1.07995 * 119.99557 * 0.02562 * 20 19 18 39 39 H 1.08007 * 119.99962 * 180.27497 * 21 20 19 40 40 H 1.08008 * 119.99990 * 179.72346 * 22 21 20 41 41 H 1.08000 * 119.99888 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00086 * 0.02562 * 24 19 18 43 43 H 1.08994 * 110.85070 * 216.34489 * 25 18 16 44 44 H 1.09003 * 110.84639 * 339.96652 * 25 18 16 45 45 H 1.08999 * 111.12443 * 276.21662 * 26 25 18 46 46 H 1.09002 * 111.16145 * 152.06908 * 26 25 18 47 47 H 1.09005 * 110.30576 * 204.64196 * 27 26 25 48 48 H 1.08997 * 110.39456 * 82.51674 * 27 26 25 49 49 H 1.08997 * 109.58831 * 246.20630 * 29 9 7 50 50 H 1.09002 * 109.59001 * 6.63029 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0532 -1.2234 0.2799 9 7 1.3709 -2.3620 -0.3478 10 6 1.8144 -3.6533 0.1949 11 6 2.0698 -4.6158 -0.9692 12 6 0.8156 -4.6983 -1.8422 13 6 0.5012 -3.3159 -2.4185 14 1 1.3517 -2.9632 -3.0022 15 7 -0.6811 -3.4022 -3.2792 16 6 -0.8639 -2.5021 -4.2655 17 8 -0.0493 -1.6209 -4.4409 18 6 -2.0805 -2.5906 -5.1504 19 6 -3.2446 -1.8985 -4.4896 20 6 -3.4733 -0.5553 -4.7229 21 6 -4.5443 0.0783 -4.1209 22 6 -5.3798 -0.6286 -3.2764 23 6 -5.1481 -1.9705 -3.0390 24 6 -4.0805 -2.6054 -3.6455 25 6 -1.7842 -1.9331 -6.5155 26 6 -1.4383 -3.1593 -7.4038 27 6 -2.3818 -4.2322 -6.8042 28 8 -2.4059 -3.9643 -5.3932 29 6 0.2246 -2.3380 -1.2665 30 1 -0.4850 0.8401 -0.0004 31 1 2.7344 -3.5145 0.7628 32 1 1.0402 -4.0622 0.8440 33 1 2.9055 -4.2508 -1.5665 34 1 2.3071 -5.6051 -0.5779 35 1 0.9861 -5.4015 -2.6575 36 1 -0.0253 -5.0398 -1.2385 37 1 -1.3325 -4.1072 -3.1392 38 1 -2.8179 -0.0020 -5.3791 39 1 -4.7255 1.1267 -4.3067 40 1 -6.2140 -0.1325 -2.8025 41 1 -5.8011 -2.5228 -2.3795 42 1 -3.8990 -3.6537 -3.4594 43 1 -2.6644 -1.4147 -6.8956 44 1 -0.9342 -1.2546 -6.4429 45 1 -0.3931 -3.4461 -7.2876 46 1 -1.6765 -2.9670 -8.4499 47 1 -1.9874 -5.2307 -6.9930 48 1 -3.3827 -4.1356 -7.2249 49 1 -0.6767 -2.6418 -0.7342 50 1 0.0952 -1.3310 -1.6632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009329482.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:39 Heat of formation + Delta-G solvation = -53.706762 kcal Electronic energy + Delta-G solvation = -31960.886558 eV Core-core repulsion = 27952.448267 eV Total energy + Delta-G solvation = -4008.438290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.07213 -40.14190 -39.33649 -38.70675 -35.88210 -34.48934 -33.59124 -32.96974 -31.91560 -31.72071 -30.58126 -29.04427 -27.26544 -25.22822 -24.00343 -23.92549 -23.69076 -22.48395 -22.25447 -21.25541 -20.61716 -18.99653 -18.74848 -18.30452 -17.33948 -16.88631 -16.82123 -16.52954 -16.07648 -15.72707 -15.70031 -15.62003 -15.29017 -14.97204 -14.83315 -14.65221 -14.38538 -14.20717 -14.08114 -14.00639 -13.63907 -13.51524 -13.03592 -12.97930 -12.81820 -12.69493 -12.53091 -12.34809 -12.26136 -12.22305 -12.06216 -11.92799 -11.82688 -11.73119 -11.65096 -11.35368 -11.29140 -10.59218 -10.49400 -10.10700 -9.84427 -9.70215 -8.71661 -7.90732 -5.37097 0.28848 0.47184 1.37929 1.42228 1.51196 1.54747 2.13810 2.46989 2.50103 2.84351 3.25125 3.43060 3.51733 3.62356 3.79689 3.93602 4.01382 4.05141 4.09517 4.11143 4.16491 4.25087 4.25613 4.31869 4.45771 4.56726 4.58677 4.65345 4.69605 4.77739 4.79086 4.86509 4.89895 4.95429 5.00030 5.06421 5.09620 5.13967 5.17243 5.19467 5.29977 5.42876 5.49903 5.50573 5.51618 5.57579 5.59431 5.74034 5.82663 6.05581 6.33942 6.57239 7.09082 7.23274 7.82499 8.32173 9.13779 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.009823 B = 0.004363 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.699010 B = 6416.727565 C = 7601.259996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.050 4.050 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.285 1.285 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.129 3.871 14 H 0.051 0.949 15 N -0.695 5.695 16 C 0.513 3.487 17 O -0.576 6.576 18 C 0.149 3.851 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.149 4.149 27 C 0.046 3.954 28 O -0.370 6.370 29 C 0.185 3.815 30 H 0.246 0.754 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.411 0.589 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.109 0.891 48 H 0.082 0.918 49 H -0.005 1.005 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.602 -11.090 -14.325 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.226 1.226 6 H -0.211 1.211 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.023 3.977 14 H 0.069 0.931 15 N -0.345 5.345 16 C 0.299 3.701 17 O -0.456 6.456 18 C 0.106 3.894 19 C -0.111 4.111 20 C -0.139 4.139 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.146 4.146 24 C -0.119 4.119 25 C -0.179 4.179 26 C -0.186 4.186 27 C -0.029 4.029 28 O -0.289 6.289 29 C 0.058 3.942 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.247 0.753 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.135 0.865 47 H 0.127 0.873 48 H 0.100 0.900 49 H 0.013 0.987 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.132 -10.523 -14.249 20.406 hybrid contribution 0.198 1.304 0.286 1.349 sum -9.934 -9.219 -13.962 19.458 Atomic orbital electron populations 1.70194 1.06699 1.25452 1.55134 1.25797 0.96023 1.01573 1.01160 0.85311 0.79011 0.80198 0.76667 1.18607 1.22557 1.21121 1.19545 0.93044 0.86139 1.40799 0.91286 1.44276 1.35826 1.02869 1.50363 1.21188 0.97591 0.85640 0.94578 1.21900 0.96830 1.00184 0.97042 1.21639 0.99153 0.93908 0.99753 1.21648 0.86969 0.98074 0.91011 0.93061 1.45862 1.25633 1.31340 1.31689 1.21026 0.86771 0.80986 0.81322 1.90700 1.46407 1.36063 1.72431 1.20688 0.89050 0.84294 0.95352 1.19790 0.96368 0.94678 1.00299 1.21210 0.98051 0.93937 1.00677 1.21408 0.94997 1.00883 0.97547 1.21558 0.99981 0.94666 0.97426 1.21487 0.97991 0.95434 0.99700 1.21145 0.94735 1.00676 0.95337 1.23221 1.03889 0.99599 0.91230 1.23295 1.00351 0.93543 1.01438 1.23716 1.00122 1.00083 0.79025 1.88371 1.90576 1.23456 1.26486 1.20798 0.87841 0.97281 0.88314 0.94489 0.92458 0.96149 0.92929 0.88298 0.89718 0.90988 0.75302 0.85882 0.84085 0.83515 0.83581 0.84809 0.87805 0.90194 0.91273 0.86539 0.87309 0.90008 0.98675 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.16 11.18 21.65 0.24 -58.91 16 2 C -0.05 -3.00 4.92 84.86 0.42 -2.59 16 3 Si 0.96 48.49 29.59 68.60 2.03 50.52 16 4 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 6 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.27 -15.58 9.58 84.03 0.81 -14.77 16 8 H 0.07 3.92 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -32.53 2.99 -698.28 -2.09 -34.61 16 10 C 0.13 5.65 6.51 86.36 0.56 6.21 16 11 C -0.12 -3.90 6.08 30.67 0.19 -3.72 16 12 C -0.11 -3.38 5.35 30.62 0.16 -3.21 16 13 C 0.13 5.37 2.62 45.21 0.12 5.49 16 14 H 0.05 2.45 7.58 -2.38 -0.02 2.43 16 15 N -0.70 -25.26 4.99 -441.49 -2.21 -27.47 16 16 C 0.51 19.89 6.70 87.66 0.59 20.48 16 17 O -0.58 -27.76 15.23 -3.04 -0.05 -27.80 16 18 C 0.15 4.39 0.98 -11.82 -0.01 4.37 16 19 C -0.11 -3.33 4.80 -19.87 -0.10 -3.43 16 20 C -0.12 -3.58 8.75 22.27 0.19 -3.38 16 21 C -0.13 -3.42 10.05 22.27 0.22 -3.19 16 22 C -0.12 -2.85 10.05 22.27 0.22 -2.63 16 23 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 24 C -0.10 -2.78 9.36 22.27 0.21 -2.58 16 25 C -0.14 -3.53 4.99 31.86 0.16 -3.38 16 26 C -0.15 -2.69 7.16 32.05 0.23 -2.46 16 27 C 0.05 0.77 7.78 72.65 0.56 1.34 16 28 O -0.37 -8.98 9.11 -148.98 -1.36 -10.33 16 29 C 0.18 9.74 4.91 86.51 0.43 10.17 16 30 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 1.80 8.14 -2.38 -0.02 1.79 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.41 12.46 8.10 -92.71 -0.75 11.71 16 38 H 0.12 3.53 6.85 -2.91 -0.02 3.51 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.15 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.13 3.34 7.54 -2.91 -0.02 3.32 16 43 H 0.10 2.19 6.89 -2.39 -0.02 2.17 16 44 H 0.08 2.43 6.76 -2.39 -0.02 2.41 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 50 H 0.04 2.68 6.04 -2.39 -0.01 2.66 16 Total: -1.00 -78.91 394.52 1.95 -76.96 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.19 Total: 31.87 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.19 Total: -0.22 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.05 Total: -121.00 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.40 Total: -38.14 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -78.91 1.95 -76.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009329482.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.250 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds