Wall clock time and date at job start Wed Apr 1 2020 03:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47372 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.46925 * 60.00117 * 3 2 1 7 7 C 1.38814 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99582 * 197.37450 * 7 2 1 9 9 N 1.36938 * 119.99945 * 17.36790 * 7 2 1 10 10 C 1.46928 * 120.62750 * 207.65867 * 9 7 2 11 11 C 1.53190 * 108.77624 * 233.63742 * 10 9 7 12 12 C 1.53036 * 109.33714 * 305.37930 * 11 10 9 13 13 C 1.53048 * 109.53747 * 61.32021 * 12 11 10 14 14 H 1.08997 * 109.49480 * 58.64903 * 13 12 11 15 15 N 1.46502 * 109.49561 * 178.71133 * 13 12 11 16 16 C 1.34779 * 119.99594 * 204.93115 * 15 13 12 17 17 O 1.21281 * 120.00554 * 0.02562 * 16 15 13 18 18 C 1.50709 * 119.99683 * 180.02562 * 16 15 13 19 19 C 1.50699 * 109.89232 * 275.52498 * 18 16 15 20 20 C 1.38243 * 119.99513 * 269.20123 * 19 18 16 21 21 C 1.38239 * 119.99175 * 179.74845 * 20 19 18 22 22 C 1.38237 * 120.00515 * 0.53364 * 21 20 19 23 23 C 1.38241 * 119.99593 * 359.74208 * 22 21 20 24 24 C 1.38233 * 120.00158 * 89.48698 * 19 18 16 25 25 C 1.54380 * 109.82688 * 154.59254 * 18 16 15 26 26 C 1.55310 * 102.25124 * 261.83955 * 25 18 16 27 27 C 1.54944 * 100.94131 * 325.87253 * 26 25 18 28 28 O 1.43235 * 109.83066 * 36.45672 * 18 16 15 29 29 C 1.46925 * 120.63115 * 27.69109 * 9 7 2 30 30 H 0.96991 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58981 * 353.42517 * 10 9 7 32 32 H 1.08997 * 109.58198 * 113.70775 * 10 9 7 33 33 H 1.08994 * 109.50060 * 65.31854 * 11 10 9 34 34 H 1.08997 * 109.49502 * 185.38670 * 11 10 9 35 35 H 1.08996 * 109.43992 * 301.31664 * 12 11 10 36 36 H 1.09002 * 109.48959 * 181.35452 * 12 11 10 37 37 H 0.96993 * 120.00308 * 24.94197 * 15 13 12 38 38 H 1.07992 * 120.00560 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.99502 * 180.29754 * 21 20 19 40 40 H 1.07994 * 120.00116 * 179.76780 * 22 21 20 41 41 H 1.07999 * 119.99490 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.00208 * 359.97438 * 24 19 18 43 43 H 1.09007 * 110.84777 * 143.65543 * 25 18 16 44 44 H 1.08993 * 110.85242 * 20.03378 * 25 18 16 45 45 H 1.09001 * 111.12615 * 207.95053 * 26 25 18 46 46 H 1.08999 * 111.12010 * 83.78759 * 26 25 18 47 47 H 1.09002 * 110.30746 * 277.52667 * 27 26 25 48 48 H 1.08999 * 110.31159 * 155.35798 * 27 26 25 49 49 H 1.09001 * 109.58523 * 6.57825 * 29 9 7 50 50 H 1.08997 * 109.70141 * 246.22164 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2788 9 7 1.3724 -2.3609 -0.3551 10 6 1.8197 -3.6549 0.1781 11 6 2.0756 -4.6088 -0.9929 12 6 0.8207 -4.6884 -1.8652 13 6 0.5019 -3.3026 -2.4310 14 1 1.3503 -2.9437 -3.0137 15 7 -0.6815 -3.3858 -3.2905 16 6 -0.8688 -2.4781 -4.2691 17 8 -0.0573 -1.5928 -4.4385 18 6 -2.0865 -2.5633 -5.1529 19 6 -1.8325 -3.5257 -6.2844 20 6 -1.3087 -3.0659 -7.4783 21 6 -1.0708 -3.9496 -8.5144 22 6 -1.3671 -5.2911 -8.3606 23 6 -1.8963 -5.7498 -7.1687 24 6 -2.1288 -4.8671 -6.1306 25 6 -2.4218 -1.1665 -5.7185 26 6 -3.5420 -0.6822 -4.7580 27 6 -4.2600 -2.0193 -4.4456 28 8 -3.2139 -3.0018 -4.3859 29 6 0.2282 -2.3338 -1.2764 30 1 -0.4850 0.8400 -0.0004 31 1 2.7402 -3.5178 0.7456 32 1 1.0483 -4.0687 0.8275 33 1 2.9094 -4.2379 -1.5888 34 1 2.3156 -5.6002 -0.6087 35 1 -0.0184 -5.0364 -1.2627 36 1 0.9918 -5.3851 -2.6858 37 1 -1.3304 -4.0939 -3.1552 38 1 -1.0811 -2.0173 -7.6000 39 1 -0.6571 -3.5913 -9.4455 40 1 -1.1848 -5.9808 -9.1714 41 1 -2.1273 -6.7979 -7.0485 42 1 -2.5420 -5.2255 -5.1995 43 1 -2.7928 -1.2408 -6.7408 44 1 -1.5546 -0.5084 -5.6663 45 1 -4.2129 0.0167 -5.2575 46 1 -3.1211 -0.2419 -3.8541 47 1 -4.9647 -2.2648 -5.2401 48 1 -4.7757 -1.9570 -3.4874 49 1 0.0987 -1.3251 -1.6686 50 1 -0.6754 -2.6397 -0.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009329490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:48 Heat of formation + Delta-G solvation = -32.666792 kcal Electronic energy + Delta-G solvation = -31790.619549 eV Core-core repulsion = 27783.093620 eV Total energy + Delta-G solvation = -4007.525929 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.91032 -38.83305 -38.29759 -37.08145 -34.13409 -32.70193 -32.58254 -31.94028 -30.87497 -30.00005 -29.03237 -27.95796 -25.23050 -24.06042 -23.02866 -22.55139 -22.07656 -21.41257 -21.00801 -19.68006 -19.18418 -17.72495 -17.33749 -16.71861 -16.03905 -15.78511 -15.34743 -15.04814 -14.84417 -14.72354 -14.22448 -13.98164 -13.81437 -13.65987 -13.53270 -13.37252 -13.20552 -12.88125 -12.70281 -12.34192 -12.27029 -12.08859 -11.90304 -11.84994 -11.32092 -11.30190 -10.99800 -10.98265 -10.89619 -10.72549 -10.68598 -10.45282 -10.32040 -10.18212 -9.90504 -9.88044 -9.47586 -9.29726 -9.01127 -8.72739 -8.44548 -8.39628 -6.62033 -5.72350 -3.15258 1.16756 1.30735 2.96674 3.42917 3.48171 3.51394 3.53171 3.53460 3.77972 4.42651 4.52669 4.56454 4.81121 4.87385 4.90046 4.99043 5.06096 5.11787 5.29581 5.39559 5.40426 5.44639 5.48105 5.57113 5.59649 5.66346 5.67767 5.71854 5.77382 5.83249 5.92997 5.99304 6.12285 6.14120 6.20499 6.34630 6.37635 6.39078 6.41125 6.46261 6.55203 6.74371 6.79980 6.82032 6.86519 6.99811 7.03982 7.35410 7.77371 7.86656 8.01372 8.51158 8.67121 9.26394 9.90569 10.45625 11.35480 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.003770 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.211779 B = 7424.472915 C = 8470.508717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.080 0.920 15 N -0.703 5.703 16 C 0.522 3.478 17 O -0.527 6.527 18 C 0.135 3.865 19 C -0.089 4.089 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.091 4.091 25 C -0.139 4.139 26 C -0.158 4.158 27 C 0.053 3.947 28 O -0.362 6.362 29 C 0.169 3.831 30 H 0.252 0.748 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.397 0.603 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 -10.386 -15.179 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.010 3.990 14 H 0.098 0.902 15 N -0.353 5.353 16 C 0.305 3.695 17 O -0.404 6.404 18 C 0.092 3.908 19 C -0.089 4.089 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.109 4.109 25 C -0.177 4.177 26 C -0.195 4.195 27 C -0.024 4.024 28 O -0.281 6.281 29 C 0.042 3.958 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.230 0.770 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.095 -9.787 -15.137 19.759 hybrid contribution -0.016 0.636 -0.054 0.639 sum -8.111 -9.151 -15.191 19.501 Atomic orbital electron populations 1.70039 1.05303 1.25298 1.53606 1.25019 0.95254 0.98419 1.00593 0.86254 0.79460 0.84065 0.77194 1.20204 1.21468 1.21787 1.19196 0.92741 0.84862 1.41619 0.91583 1.43983 1.36040 1.01596 1.49563 1.20951 0.97685 0.86897 0.92864 1.21993 0.96983 0.99305 0.98740 1.21669 0.98890 0.96075 0.98749 1.21996 0.87040 0.96920 0.93008 0.90151 1.45958 1.25814 1.30704 1.32793 1.20145 0.86638 0.81935 0.80791 1.90732 1.45157 1.34139 1.70339 1.20958 0.86511 0.94025 0.89259 1.19765 1.00879 0.94256 0.94021 1.21093 0.98224 1.00328 0.92448 1.21109 1.00536 0.93529 0.98924 1.21182 0.99090 0.95731 0.97634 1.21145 0.99927 0.99600 0.93541 1.21003 0.98245 0.92323 0.99305 1.23212 1.00910 0.94177 0.99380 1.23309 0.97491 0.97913 1.00808 1.23439 0.90020 0.86886 1.02010 1.88386 1.24663 1.44182 1.70886 1.21060 0.88656 0.98898 0.87194 0.93806 0.92674 0.96403 0.92165 0.92644 0.92235 0.93134 0.76972 0.85513 0.85919 0.86159 0.85953 0.85377 0.89703 0.87574 0.89570 0.89479 0.92026 0.89125 0.88797 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 11.19 55.49 0.62 -26.36 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 22.69 29.59 -169.99 -5.03 17.66 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.25 -7.26 9.59 -15.06 -0.14 -7.40 16 8 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 9 N -0.59 -15.29 2.99 -172.33 -0.52 -15.80 16 10 C 0.14 3.03 6.52 -3.71 -0.02 3.00 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 12 C -0.12 -1.97 5.36 -26.69 -0.14 -2.11 16 13 C 0.12 2.36 2.60 -67.81 -0.18 2.19 16 14 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.70 -12.58 5.00 -53.68 -0.27 -12.85 16 16 C 0.52 9.71 6.70 -10.98 -0.07 9.64 16 17 O -0.53 -11.89 15.23 5.56 0.08 -11.80 16 18 C 0.14 1.97 0.98 -92.20 -0.09 1.88 16 19 C -0.09 -1.17 4.81 -104.62 -0.50 -1.67 16 20 C -0.10 -1.25 8.75 -39.58 -0.35 -1.60 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 24 C -0.09 -1.08 9.36 -39.58 -0.37 -1.45 16 25 C -0.14 -1.82 4.98 -24.78 -0.12 -1.95 16 26 C -0.16 -1.89 7.16 -24.48 -0.18 -2.06 16 27 C 0.05 0.60 7.78 38.18 0.30 0.89 16 28 O -0.36 -4.98 9.10 -35.23 -0.32 -5.31 16 29 C 0.17 4.23 4.89 -3.71 -0.02 4.21 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.40 6.13 8.10 -40.82 -0.33 5.80 16 38 H 0.13 1.46 6.82 -52.49 -0.36 1.10 16 39 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 1.45 7.54 -52.49 -0.40 1.05 16 43 H 0.08 0.91 6.86 -51.93 -0.36 0.56 16 44 H 0.11 1.61 6.76 -51.93 -0.35 1.26 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.09 2.75 6.03 -51.93 -0.31 2.44 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -33.45 394.43 -10.77 -44.22 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.96 Total: 7.99 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.33 Total: -3.69 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.16 Total: -55.01 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.24 Total: -17.11 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.45 -10.77 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009329490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.554 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds