Wall clock time and date at job start Wed Apr 1 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 119.99767 * 2 1 4 4 H 1.48496 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47372 * 299.99996 * 3 2 1 6 6 H 1.48503 * 109.46925 * 60.00117 * 3 2 1 7 7 C 1.38814 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99582 * 197.37450 * 7 2 1 9 9 N 1.36938 * 119.99945 * 17.36790 * 7 2 1 10 10 C 1.46928 * 120.62750 * 207.65867 * 9 7 2 11 11 C 1.53190 * 108.77624 * 233.63742 * 10 9 7 12 12 C 1.53036 * 109.33714 * 305.37930 * 11 10 9 13 13 C 1.53048 * 109.53747 * 61.32021 * 12 11 10 14 14 H 1.08997 * 109.49480 * 58.64903 * 13 12 11 15 15 N 1.46502 * 109.49561 * 178.71133 * 13 12 11 16 16 C 1.34779 * 119.99594 * 204.93115 * 15 13 12 17 17 O 1.21281 * 120.00554 * 0.02562 * 16 15 13 18 18 C 1.50709 * 119.99683 * 180.02562 * 16 15 13 19 19 C 1.50699 * 109.89232 * 275.52498 * 18 16 15 20 20 C 1.38243 * 119.99513 * 269.20123 * 19 18 16 21 21 C 1.38239 * 119.99175 * 179.74845 * 20 19 18 22 22 C 1.38237 * 120.00515 * 0.53364 * 21 20 19 23 23 C 1.38241 * 119.99593 * 359.74208 * 22 21 20 24 24 C 1.38233 * 120.00158 * 89.48698 * 19 18 16 25 25 C 1.54380 * 109.82688 * 154.59254 * 18 16 15 26 26 C 1.55310 * 102.25124 * 261.83955 * 25 18 16 27 27 C 1.54944 * 100.94131 * 325.87253 * 26 25 18 28 28 O 1.43235 * 109.83066 * 36.45672 * 18 16 15 29 29 C 1.46925 * 120.63115 * 27.69109 * 9 7 2 30 30 H 0.96991 * 120.00198 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58981 * 353.42517 * 10 9 7 32 32 H 1.08997 * 109.58198 * 113.70775 * 10 9 7 33 33 H 1.08994 * 109.50060 * 65.31854 * 11 10 9 34 34 H 1.08997 * 109.49502 * 185.38670 * 11 10 9 35 35 H 1.08996 * 109.43992 * 301.31664 * 12 11 10 36 36 H 1.09002 * 109.48959 * 181.35452 * 12 11 10 37 37 H 0.96993 * 120.00308 * 24.94197 * 15 13 12 38 38 H 1.07992 * 120.00560 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.99502 * 180.29754 * 21 20 19 40 40 H 1.07994 * 120.00116 * 179.76780 * 22 21 20 41 41 H 1.07999 * 119.99490 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.00208 * 359.97438 * 24 19 18 43 43 H 1.09007 * 110.84777 * 143.65543 * 25 18 16 44 44 H 1.08993 * 110.85242 * 20.03378 * 25 18 16 45 45 H 1.09001 * 111.12615 * 207.95053 * 26 25 18 46 46 H 1.08999 * 111.12010 * 83.78759 * 26 25 18 47 47 H 1.09002 * 110.30746 * 277.52667 * 27 26 25 48 48 H 1.08999 * 110.31159 * 155.35798 * 27 26 25 49 49 H 1.09001 * 109.58523 * 6.57825 * 29 9 7 50 50 H 1.08997 * 109.70141 * 246.22164 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2788 9 7 1.3724 -2.3609 -0.3551 10 6 1.8197 -3.6549 0.1781 11 6 2.0756 -4.6088 -0.9929 12 6 0.8207 -4.6884 -1.8652 13 6 0.5019 -3.3026 -2.4310 14 1 1.3503 -2.9437 -3.0137 15 7 -0.6815 -3.3858 -3.2905 16 6 -0.8688 -2.4781 -4.2691 17 8 -0.0573 -1.5928 -4.4385 18 6 -2.0865 -2.5633 -5.1529 19 6 -1.8325 -3.5257 -6.2844 20 6 -1.3087 -3.0659 -7.4783 21 6 -1.0708 -3.9496 -8.5144 22 6 -1.3671 -5.2911 -8.3606 23 6 -1.8963 -5.7498 -7.1687 24 6 -2.1288 -4.8671 -6.1306 25 6 -2.4218 -1.1665 -5.7185 26 6 -3.5420 -0.6822 -4.7580 27 6 -4.2600 -2.0193 -4.4456 28 8 -3.2139 -3.0018 -4.3859 29 6 0.2282 -2.3338 -1.2764 30 1 -0.4850 0.8400 -0.0004 31 1 2.7402 -3.5178 0.7456 32 1 1.0483 -4.0687 0.8275 33 1 2.9094 -4.2379 -1.5888 34 1 2.3156 -5.6002 -0.6087 35 1 -0.0184 -5.0364 -1.2627 36 1 0.9918 -5.3851 -2.6858 37 1 -1.3304 -4.0939 -3.1552 38 1 -1.0811 -2.0173 -7.6000 39 1 -0.6571 -3.5913 -9.4455 40 1 -1.1848 -5.9808 -9.1714 41 1 -2.1273 -6.7979 -7.0485 42 1 -2.5420 -5.2255 -5.1995 43 1 -2.7928 -1.2408 -6.7408 44 1 -1.5546 -0.5084 -5.6663 45 1 -4.2129 0.0167 -5.2575 46 1 -3.1211 -0.2419 -3.8541 47 1 -4.9647 -2.2648 -5.2401 48 1 -4.7757 -1.9570 -3.4874 49 1 0.0987 -1.3251 -1.6686 50 1 -0.6754 -2.6397 -0.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009329490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:46 Heat of formation + Delta-G solvation = -53.627657 kcal Electronic energy + Delta-G solvation = -31791.528480 eV Core-core repulsion = 27783.093620 eV Total energy + Delta-G solvation = -4008.434860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.08361 -40.15922 -39.33483 -38.72563 -35.89240 -34.49574 -33.60429 -32.99479 -31.92611 -31.70240 -30.59134 -29.06147 -27.27301 -25.23824 -24.04634 -23.92181 -23.67529 -22.46889 -22.27364 -21.26490 -20.61783 -19.02302 -18.74201 -18.29496 -17.35678 -16.89921 -16.75325 -16.57397 -16.13139 -15.83216 -15.68489 -15.49467 -15.24441 -15.02780 -14.79371 -14.75450 -14.35307 -14.19328 -14.13789 -13.98154 -13.62998 -13.52463 -13.04887 -12.98367 -12.82959 -12.69520 -12.54198 -12.37369 -12.27869 -12.24131 -12.06531 -11.93069 -11.81460 -11.73937 -11.66688 -11.37699 -11.29587 -10.59317 -10.49335 -10.12864 -9.82921 -9.69024 -8.72442 -7.91471 -5.37391 0.30565 0.48922 1.38142 1.42472 1.51446 1.52325 2.13959 2.46577 2.48344 2.85921 3.24449 3.41082 3.50032 3.61741 3.80016 3.92513 3.99355 4.06309 4.08680 4.10759 4.17201 4.23312 4.25137 4.33214 4.45118 4.56779 4.59003 4.65868 4.67631 4.73469 4.78265 4.81021 4.88878 4.92578 5.01224 5.05530 5.09724 5.14738 5.16446 5.18847 5.29224 5.41973 5.49880 5.52449 5.54753 5.59144 5.60388 5.73261 5.81640 6.07485 6.33573 6.56338 7.08599 7.22504 7.81902 8.31676 9.13552 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012091 B = 0.003770 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.211779 B = 7424.472915 C = 8470.508717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.050 4.050 3 Si 0.961 3.039 4 H -0.263 1.263 5 H -0.298 1.298 6 H -0.284 1.284 7 C -0.266 4.266 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.129 3.871 14 H 0.049 0.951 15 N -0.695 5.695 16 C 0.513 3.487 17 O -0.577 6.577 18 C 0.146 3.854 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.101 4.101 25 C -0.139 4.139 26 C -0.156 4.156 27 C 0.049 3.951 28 O -0.371 6.371 29 C 0.184 3.816 30 H 0.247 0.753 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.411 0.589 38 H 0.122 0.878 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.051 0.949 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.043 0.957 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -13.209 -16.902 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.245 4.245 3 Si 0.789 3.211 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.211 1.211 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.145 4.145 13 C 0.023 3.977 14 H 0.068 0.932 15 N -0.345 5.345 16 C 0.298 3.702 17 O -0.456 6.456 18 C 0.103 3.897 19 C -0.108 4.108 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.133 4.133 23 C -0.142 4.142 24 C -0.119 4.119 25 C -0.176 4.176 26 C -0.194 4.194 27 C -0.026 4.026 28 O -0.291 6.291 29 C 0.057 3.943 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.247 0.753 38 H 0.140 0.860 39 H 0.162 0.838 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.148 0.852 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.136 0.864 46 H 0.070 0.930 47 H 0.109 0.891 48 H 0.115 0.885 49 H 0.061 0.939 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -8.469 -12.666 -16.848 22.716 hybrid contribution 0.097 1.472 0.483 1.552 sum -8.373 -11.194 -16.366 21.523 Atomic orbital electron populations 1.70190 1.06700 1.25507 1.55151 1.25789 0.96043 1.01562 1.01130 0.85298 0.78974 0.80136 0.76684 1.18695 1.22502 1.21097 1.19548 0.93087 0.86231 1.40704 0.91324 1.44266 1.35961 1.02773 1.50379 1.21182 0.97610 0.85572 0.94589 1.21895 0.96787 1.00279 0.97008 1.21640 0.99202 0.93852 0.99776 1.21559 0.86891 0.98137 0.91102 0.93237 1.45855 1.25440 1.31050 1.32173 1.21059 0.87510 0.80783 0.80833 1.90698 1.47340 1.35914 1.71695 1.20745 0.84814 0.95425 0.88730 1.19698 1.02785 0.94584 0.93745 1.21215 0.98881 1.00747 0.92964 1.21419 0.99994 0.93805 0.99170 1.21585 0.97605 0.95836 0.98251 1.21482 0.99015 1.00619 0.93055 1.21139 0.98611 0.92004 1.00163 1.23218 1.00234 0.93082 1.01105 1.23306 0.97686 0.99054 0.99348 1.23657 0.89698 0.85729 1.03528 1.88353 1.24830 1.44793 1.71103 1.20708 0.87958 0.97361 0.88269 0.94414 0.92458 0.96050 0.93006 0.88258 0.90879 0.89863 0.75303 0.85957 0.83752 0.83171 0.83361 0.85157 0.86957 0.90470 0.86429 0.93010 0.89052 0.88502 0.93880 0.98564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.79 11.19 21.65 0.24 -58.55 16 2 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 3 Si 0.96 48.32 29.59 68.60 2.03 50.35 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 6 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.27 -15.60 9.59 84.03 0.81 -14.80 16 8 H 0.07 3.90 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -32.59 2.99 -699.12 -2.09 -34.69 16 10 C 0.14 5.68 6.52 86.36 0.56 6.24 16 11 C -0.12 -3.94 6.08 30.67 0.19 -3.75 16 12 C -0.11 -3.42 5.36 30.62 0.16 -3.25 16 13 C 0.13 5.42 2.60 45.07 0.12 5.54 16 14 H 0.05 2.40 7.58 -2.39 -0.02 2.38 16 15 N -0.70 -25.53 5.00 -442.15 -2.21 -27.74 16 16 C 0.51 20.08 6.70 87.66 0.59 20.67 16 17 O -0.58 -28.05 15.23 -3.03 -0.05 -28.10 16 18 C 0.15 4.33 0.98 -11.82 -0.01 4.31 16 19 C -0.11 -2.76 4.81 -19.86 -0.10 -2.86 16 20 C -0.12 -2.83 8.75 22.27 0.19 -2.64 16 21 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 22 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 23 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 24 C -0.10 -2.23 9.36 22.27 0.21 -2.02 16 25 C -0.14 -3.77 4.98 31.86 0.16 -3.61 16 26 C -0.16 -3.82 7.16 32.05 0.23 -3.59 16 27 C 0.05 1.08 7.78 72.65 0.56 1.64 16 28 O -0.37 -10.13 9.10 -148.98 -1.36 -11.49 16 29 C 0.18 9.70 4.89 86.36 0.42 10.13 16 30 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 31 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.41 12.61 8.10 -92.71 -0.75 11.86 16 38 H 0.12 2.87 6.82 -2.91 -0.02 2.85 16 39 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.13 2.72 7.54 -2.91 -0.02 2.69 16 43 H 0.11 2.37 6.86 -2.38 -0.02 2.36 16 44 H 0.08 2.56 6.76 -2.39 -0.02 2.54 16 45 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 49 H 0.04 2.70 6.03 -2.39 -0.01 2.69 16 50 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: -1.00 -78.51 394.43 1.93 -76.58 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.19 Total: 29.82 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.18 Total: 3.81 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -4.06 Total: -120.98 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.40 Total: -39.59 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -78.51 1.93 -76.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009329490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.951 kcal (2) G-P(sol) polarization free energy of solvation -78.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds