Wall clock time and date at job start Wed Apr 1 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48494 * 109.47086 * 274.98599 * 3 2 1 5 5 H 1.48502 * 109.46839 * 34.98454 * 3 2 1 6 6 H 1.48500 * 109.47521 * 154.98332 * 3 2 1 7 7 C 1.38811 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00444 * 187.05707 * 7 2 1 9 9 N 1.36935 * 120.00084 * 7.05276 * 7 2 1 10 10 C 1.47023 * 125.64834 * 354.78672 * 9 7 2 11 11 C 1.54325 * 107.27227 * 178.99069 * 10 9 7 12 12 C 1.55153 * 102.94292 * 337.80756 * 11 10 9 13 13 H 1.09001 * 111.00563 * 277.38630 * 12 11 10 14 14 N 1.46499 * 111.00645 * 153.57564 * 12 11 10 15 15 C 1.34774 * 120.00519 * 158.17846 * 14 12 11 16 16 O 1.21291 * 119.99536 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00525 * 179.97438 * 15 14 12 18 18 H 1.08997 * 110.41329 * 57.30807 * 17 15 14 19 19 C 1.54480 * 110.36940 * 295.00159 * 17 15 14 20 20 C 1.54510 * 104.18237 * 217.25595 * 19 17 15 21 21 C 1.54478 * 104.06364 * 359.93100 * 20 19 17 22 22 H 1.08995 * 110.37382 * 265.03912 * 21 20 19 23 23 C 1.52997 * 110.37419 * 142.80939 * 21 20 19 24 24 C 1.50698 * 109.47643 * 175.00323 * 23 21 20 25 25 C 1.38241 * 119.99619 * 269.73127 * 24 23 21 26 26 C 1.38238 * 119.99382 * 179.76474 * 25 24 23 27 27 C 1.38234 * 119.99989 * 0.50279 * 26 25 24 28 28 C 1.38233 * 120.00259 * 359.74838 * 27 26 25 29 29 C 1.38228 * 119.99832 * 359.97438 * 28 27 26 30 30 O 1.44429 * 104.79971 * 23.97841 * 21 20 19 31 31 C 1.47469 * 125.63205 * 174.80418 * 9 7 2 32 32 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88108 * 59.57724 * 10 9 7 34 34 H 1.08996 * 109.88397 * 298.41035 * 10 9 7 35 35 H 1.09000 * 110.72099 * 219.44097 * 11 10 9 36 36 H 1.09001 * 110.72002 * 96.16886 * 11 10 9 37 37 H 0.97000 * 119.99524 * 338.17760 * 14 12 11 38 38 H 1.08999 * 110.51227 * 98.54642 * 19 17 15 39 39 H 1.09002 * 110.51278 * 335.96986 * 19 17 15 40 40 H 1.08994 * 110.51048 * 118.57860 * 20 19 17 41 41 H 1.09002 * 110.51252 * 241.28933 * 20 19 17 42 42 H 1.09008 * 109.47116 * 295.00490 * 23 21 20 43 43 H 1.09006 * 109.47132 * 55.00008 * 23 21 20 44 44 H 1.07990 * 120.00219 * 359.97438 * 25 24 23 45 45 H 1.07995 * 119.99474 * 180.23126 * 26 25 24 46 46 H 1.08003 * 119.99625 * 179.73129 * 27 26 25 47 47 H 1.07995 * 119.99865 * 179.97438 * 28 27 26 48 48 H 1.08006 * 120.00210 * 179.97438 * 29 28 27 49 49 H 1.08992 * 110.34868 * 85.23426 * 31 9 7 50 50 H 1.09003 * 110.40422 * 322.89841 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5041 2.6199 0.8028 6 1 3.5964 1.4122 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1154 9 7 1.3334 -2.3836 -0.1445 10 6 -0.1282 -2.5325 -0.2009 11 6 -0.4287 -4.0336 -0.3959 12 6 0.8912 -4.5760 -1.0051 13 1 0.9255 -4.4020 -2.0806 14 7 1.0647 -5.9983 -0.7004 15 6 1.8716 -6.7583 -1.4671 16 8 2.4544 -6.2644 -2.4092 17 6 2.0506 -8.2213 -1.1532 18 1 1.0873 -8.7313 -1.1558 19 6 2.7483 -8.3966 0.2138 20 6 3.6787 -9.6134 0.0108 21 6 3.4333 -10.0330 -1.4555 22 1 2.6844 -10.8234 -1.5037 23 6 4.7396 -10.4980 -2.1022 24 6 4.4570 -11.0170 -3.4885 25 6 4.1626 -12.3541 -3.6792 26 6 3.8986 -12.8291 -4.9503 27 6 3.9393 -11.9691 -6.0318 28 6 4.2388 -10.6331 -5.8417 29 6 4.4971 -10.1569 -4.5700 30 8 2.9484 -8.8376 -2.1051 31 6 1.9502 -3.7173 -0.2697 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5267 -1.9627 -1.0403 34 1 -0.5726 -2.1835 0.7311 35 1 -1.2591 -4.1740 -1.0877 36 1 -0.6372 -4.5126 0.5608 37 1 0.5989 -6.3932 0.0533 38 1 2.0149 -8.6025 0.9934 39 1 3.3296 -7.5086 0.4626 40 1 4.7200 -9.3265 0.1568 41 1 3.4051 -10.4208 0.6900 42 1 5.4338 -9.6598 -2.1625 43 1 5.1806 -11.2923 -1.4998 44 1 4.1355 -13.0269 -2.8349 45 1 3.6650 -13.8730 -5.0989 46 1 3.7373 -12.3412 -7.0254 47 1 4.2710 -9.9614 -6.6867 48 1 4.7316 -9.1132 -4.4214 49 1 2.1575 -4.1330 0.7162 50 1 2.8660 -3.6587 -0.8579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015317683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:02 Heat of formation + Delta-G solvation = -33.118215 kcal Electronic energy + Delta-G solvation = -29611.239437 eV Core-core repulsion = 25603.693933 eV Total energy + Delta-G solvation = -4007.545504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.47684 -39.44734 -38.59372 -37.06511 -34.06695 -33.71013 -32.44620 -31.77793 -31.03418 -30.02358 -29.09131 -27.40654 -26.18643 -24.41268 -23.21048 -22.70454 -21.66847 -21.04844 -20.66667 -20.36379 -19.79305 -17.49255 -17.10354 -16.78647 -16.62518 -16.30230 -15.64915 -15.33809 -14.95108 -14.78424 -14.54646 -14.49077 -14.02007 -13.85893 -13.55979 -13.48751 -13.42277 -12.88353 -12.57859 -12.43793 -12.41258 -12.24721 -12.03714 -11.86183 -11.78075 -11.72397 -11.15534 -11.03231 -10.96863 -10.93646 -10.91698 -10.74338 -10.35570 -10.14059 -10.08039 -9.91385 -9.73862 -9.43837 -9.07095 -8.86021 -8.74652 -8.57095 -6.83539 -5.72431 -3.04584 1.17209 1.25782 2.73861 2.94564 3.42183 3.47695 3.49092 3.59818 3.82930 4.26267 4.35663 4.51383 4.57963 4.59568 4.66399 4.81203 4.84492 4.87937 4.95875 5.02630 5.13603 5.24833 5.27709 5.32724 5.34748 5.44572 5.45631 5.49366 5.56928 5.59559 5.72199 5.74411 5.78407 5.80592 5.87423 5.91486 6.17990 6.28341 6.31551 6.37322 6.41063 6.43703 6.57684 6.59293 6.70943 6.85429 6.98146 7.51373 7.59525 7.69026 7.81906 8.24703 8.40814 9.21850 9.81972 10.47259 11.39934 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.001985 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.134879 B =14098.946276 C =14522.574006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.129 3.871 13 H 0.095 0.905 14 N -0.714 5.714 15 C 0.516 3.484 16 O -0.518 6.518 17 C 0.059 3.941 18 H 0.092 0.908 19 C -0.146 4.146 20 C -0.149 4.149 21 C 0.078 3.922 22 H 0.071 0.929 23 C -0.075 4.075 24 C -0.081 4.081 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.097 4.097 30 O -0.334 6.334 31 C 0.130 3.870 32 H 0.252 0.748 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.397 0.603 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.126 0.874 49 H 0.019 0.981 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 -28.483 -2.387 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.024 3.976 13 H 0.113 0.887 14 N -0.367 5.367 15 C 0.300 3.700 16 O -0.392 6.392 17 C -0.003 4.003 18 H 0.109 0.891 19 C -0.184 4.184 20 C -0.186 4.186 21 C 0.020 3.980 22 H 0.089 0.911 23 C -0.112 4.112 24 C -0.081 4.081 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.115 4.115 30 O -0.253 6.253 31 C 0.002 3.998 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.144 0.856 49 H 0.036 0.964 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.980 -27.801 -3.290 28.435 hybrid contribution 0.004 0.611 0.570 0.836 sum 4.983 -27.190 -2.719 27.777 Atomic orbital electron populations 1.69954 1.04913 1.25098 1.56917 1.24824 0.95740 0.97689 1.02147 0.86100 0.78676 0.83478 0.77550 1.21555 1.21785 1.20619 1.19070 0.91196 0.82428 1.42851 0.90370 1.44400 1.01607 1.00904 1.86161 1.21159 0.84651 0.87679 1.01194 1.23177 0.95680 1.00304 0.99599 1.22312 0.96912 0.77588 1.00772 0.88667 1.45919 1.47818 1.10533 1.32406 1.20112 0.79548 0.87407 0.82964 1.90746 1.45881 1.73856 1.28714 1.22862 0.95474 0.92470 0.89488 0.89059 1.22915 0.99461 0.99793 0.96197 1.23002 1.01206 0.97871 0.96567 1.23032 0.95602 0.88533 0.90868 0.91070 1.20695 0.96308 1.01427 0.92809 1.19777 0.99745 0.93493 0.95122 1.21014 1.00714 0.94994 0.97163 1.21080 1.00768 0.99549 0.92869 1.21142 1.00527 0.93900 0.98793 1.21199 0.99579 0.95639 0.97353 1.21169 0.98364 0.99866 0.92078 1.89348 1.61803 1.37019 1.37081 1.21830 0.95014 0.86671 0.96275 0.93727 0.93081 0.93727 0.91558 0.92011 0.76972 0.89569 0.89751 0.90064 0.90102 0.89713 0.89482 0.86348 0.86359 0.86377 0.86108 0.85578 0.96363 0.93832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.36 55.49 0.57 -26.56 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.42 29.56 -169.99 -5.02 17.39 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.47 10.26 -15.06 -0.15 -6.62 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.60 -15.69 3.40 -170.04 -0.58 -16.27 16 10 C 0.18 4.27 5.38 -3.06 -0.02 4.26 16 11 C -0.15 -2.64 6.59 -24.90 -0.16 -2.80 16 12 C 0.13 2.35 3.37 -65.78 -0.22 2.13 16 13 H 0.10 1.95 7.63 -51.93 -0.40 1.56 16 14 N -0.71 -10.04 5.20 -51.73 -0.27 -10.31 16 15 C 0.52 7.90 7.08 -10.99 -0.08 7.82 16 16 O -0.52 -10.54 16.25 -13.56 -0.22 -10.76 16 17 C 0.06 0.66 3.72 -27.11 -0.10 0.56 16 18 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.15 -1.24 6.60 -25.16 -0.17 -1.41 16 20 C -0.15 -1.07 6.63 -25.16 -0.17 -1.24 16 21 C 0.08 0.69 3.24 -25.96 -0.08 0.61 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 C -0.08 -0.62 4.97 -27.89 -0.14 -0.76 16 24 C -0.08 -0.80 5.04 -104.62 -0.53 -1.32 16 25 C -0.12 -1.03 9.70 -39.58 -0.38 -1.42 16 26 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 27 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.21 10.05 -39.59 -0.40 -1.61 16 29 C -0.10 -1.08 9.61 -39.59 -0.38 -1.46 16 30 O -0.33 -4.36 10.42 -54.34 -0.57 -4.93 16 31 C 0.13 2.81 6.93 -2.50 -0.02 2.79 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.05 1.36 7.30 -51.93 -0.38 0.98 16 34 H 0.04 1.16 7.61 -51.93 -0.40 0.77 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 37 H 0.40 4.18 8.54 -40.82 -0.35 3.83 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 40 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.77 8.09 -51.92 -0.42 0.35 16 43 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 48 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -34.92 405.66 -12.07 -46.99 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.21 Total: 2.09 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.89 Total: -3.76 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.27 Total: -53.14 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.79 Total: -15.68 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.92 -12.07 -46.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015317683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.868 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds