Wall clock time and date at job start Wed Apr 1 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86802 * 119.99979 * 2 1 4 4 H 1.48494 * 109.47086 * 274.98599 * 3 2 1 5 5 H 1.48502 * 109.46839 * 34.98454 * 3 2 1 6 6 H 1.48500 * 109.47521 * 154.98332 * 3 2 1 7 7 C 1.38811 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00444 * 187.05707 * 7 2 1 9 9 N 1.36935 * 120.00084 * 7.05276 * 7 2 1 10 10 C 1.47023 * 125.64834 * 354.78672 * 9 7 2 11 11 C 1.54325 * 107.27227 * 178.99069 * 10 9 7 12 12 C 1.55153 * 102.94292 * 337.80756 * 11 10 9 13 13 H 1.09001 * 111.00563 * 277.38630 * 12 11 10 14 14 N 1.46499 * 111.00645 * 153.57564 * 12 11 10 15 15 C 1.34774 * 120.00519 * 158.17846 * 14 12 11 16 16 O 1.21291 * 119.99536 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.00525 * 179.97438 * 15 14 12 18 18 H 1.08997 * 110.41329 * 57.30807 * 17 15 14 19 19 C 1.54480 * 110.36940 * 295.00159 * 17 15 14 20 20 C 1.54510 * 104.18237 * 217.25595 * 19 17 15 21 21 C 1.54478 * 104.06364 * 359.93100 * 20 19 17 22 22 H 1.08995 * 110.37382 * 265.03912 * 21 20 19 23 23 C 1.52997 * 110.37419 * 142.80939 * 21 20 19 24 24 C 1.50698 * 109.47643 * 175.00323 * 23 21 20 25 25 C 1.38241 * 119.99619 * 269.73127 * 24 23 21 26 26 C 1.38238 * 119.99382 * 179.76474 * 25 24 23 27 27 C 1.38234 * 119.99989 * 0.50279 * 26 25 24 28 28 C 1.38233 * 120.00259 * 359.74838 * 27 26 25 29 29 C 1.38228 * 119.99832 * 359.97438 * 28 27 26 30 30 O 1.44429 * 104.79971 * 23.97841 * 21 20 19 31 31 C 1.47469 * 125.63205 * 174.80418 * 9 7 2 32 32 H 0.96999 * 120.00382 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.88108 * 59.57724 * 10 9 7 34 34 H 1.08996 * 109.88397 * 298.41035 * 10 9 7 35 35 H 1.09000 * 110.72099 * 219.44097 * 11 10 9 36 36 H 1.09001 * 110.72002 * 96.16886 * 11 10 9 37 37 H 0.97000 * 119.99524 * 338.17760 * 14 12 11 38 38 H 1.08999 * 110.51227 * 98.54642 * 19 17 15 39 39 H 1.09002 * 110.51278 * 335.96986 * 19 17 15 40 40 H 1.08994 * 110.51048 * 118.57860 * 20 19 17 41 41 H 1.09002 * 110.51252 * 241.28933 * 20 19 17 42 42 H 1.09008 * 109.47116 * 295.00490 * 23 21 20 43 43 H 1.09006 * 109.47132 * 55.00008 * 23 21 20 44 44 H 1.07990 * 120.00219 * 359.97438 * 25 24 23 45 45 H 1.07995 * 119.99474 * 180.23126 * 26 25 24 46 46 H 1.08003 * 119.99625 * 179.73129 * 27 26 25 47 47 H 1.07995 * 119.99865 * 179.97438 * 28 27 26 48 48 H 1.08006 * 120.00210 * 179.97438 * 29 28 27 49 49 H 1.08992 * 110.34868 * 85.23426 * 31 9 7 50 50 H 1.09003 * 110.40422 * 322.89841 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5041 2.6199 0.8028 6 1 3.5964 1.4122 0.5921 7 6 2.0102 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1154 9 7 1.3334 -2.3836 -0.1445 10 6 -0.1282 -2.5325 -0.2009 11 6 -0.4287 -4.0336 -0.3959 12 6 0.8912 -4.5760 -1.0051 13 1 0.9255 -4.4020 -2.0806 14 7 1.0647 -5.9983 -0.7004 15 6 1.8716 -6.7583 -1.4671 16 8 2.4544 -6.2644 -2.4092 17 6 2.0506 -8.2213 -1.1532 18 1 1.0873 -8.7313 -1.1558 19 6 2.7483 -8.3966 0.2138 20 6 3.6787 -9.6134 0.0108 21 6 3.4333 -10.0330 -1.4555 22 1 2.6844 -10.8234 -1.5037 23 6 4.7396 -10.4980 -2.1022 24 6 4.4570 -11.0170 -3.4885 25 6 4.1626 -12.3541 -3.6792 26 6 3.8986 -12.8291 -4.9503 27 6 3.9393 -11.9691 -6.0318 28 6 4.2388 -10.6331 -5.8417 29 6 4.4971 -10.1569 -4.5700 30 8 2.9484 -8.8376 -2.1051 31 6 1.9502 -3.7173 -0.2697 32 1 -0.4851 0.8400 -0.0004 33 1 -0.5267 -1.9627 -1.0403 34 1 -0.5726 -2.1835 0.7311 35 1 -1.2591 -4.1740 -1.0877 36 1 -0.6372 -4.5126 0.5608 37 1 0.5989 -6.3932 0.0533 38 1 2.0149 -8.6025 0.9934 39 1 3.3296 -7.5086 0.4626 40 1 4.7200 -9.3265 0.1568 41 1 3.4051 -10.4208 0.6900 42 1 5.4338 -9.6598 -2.1625 43 1 5.1806 -11.2923 -1.4998 44 1 4.1355 -13.0269 -2.8349 45 1 3.6650 -13.8730 -5.0989 46 1 3.7373 -12.3412 -7.0254 47 1 4.2710 -9.9614 -6.6867 48 1 4.7316 -9.1132 -4.4214 49 1 2.1575 -4.1330 0.7162 50 1 2.8660 -3.6587 -0.8579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015317683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:01 Heat of formation + Delta-G solvation = -54.454242 kcal Electronic energy + Delta-G solvation = -29612.164636 eV Core-core repulsion = 25603.693933 eV Total energy + Delta-G solvation = -4008.470704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.45676 -40.35446 -39.60713 -38.66109 -35.67555 -34.43924 -33.88916 -32.94634 -31.72086 -31.23656 -30.57051 -28.91023 -27.29499 -26.23763 -24.05518 -23.41132 -22.39485 -22.21637 -21.93689 -21.72002 -21.25222 -19.07645 -18.32942 -17.70371 -17.62344 -17.30609 -16.79758 -16.60390 -16.12397 -16.06445 -15.77928 -15.66947 -15.36774 -14.73039 -14.65426 -14.37236 -14.23467 -14.16904 -14.08160 -13.96053 -13.71202 -13.37953 -13.03385 -12.98043 -12.82188 -12.71158 -12.52847 -12.45233 -12.36272 -12.13848 -12.03864 -11.85608 -11.81868 -11.67510 -11.61103 -11.54877 -11.00691 -10.72420 -10.61171 -10.14478 -9.77904 -9.55029 -8.94169 -7.90240 -5.24921 0.48410 0.54405 1.43238 1.46348 1.54218 1.55072 1.84617 2.47203 2.89565 3.01322 3.28568 3.46875 3.63053 3.65468 3.79164 3.88505 3.94931 4.01768 4.03075 4.14134 4.18148 4.20801 4.22374 4.30375 4.34722 4.47942 4.56979 4.63245 4.67825 4.69394 4.71760 4.83971 4.85385 4.94626 4.96548 4.97234 5.05351 5.08150 5.20528 5.21182 5.24354 5.39590 5.49645 5.61045 5.62273 5.66626 5.71158 5.73100 5.90379 6.16253 6.17952 6.56680 7.06694 7.24424 7.71919 8.35650 9.20324 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019132 B = 0.001985 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.134879 B =14098.946276 C =14522.574006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.076 0.924 9 N -0.626 5.626 10 C 0.182 3.818 11 C -0.125 4.125 12 C 0.146 3.854 13 H 0.068 0.932 14 N -0.695 5.695 15 C 0.511 3.489 16 O -0.578 6.578 17 C 0.062 3.938 18 H 0.125 0.875 19 C -0.142 4.142 20 C -0.141 4.141 21 C 0.074 3.926 22 H 0.088 0.912 23 C -0.074 4.074 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.134 4.134 28 C -0.138 4.138 29 C -0.126 4.126 30 O -0.375 6.375 31 C 0.129 3.871 32 H 0.249 0.751 33 H 0.014 0.986 34 H 0.018 0.982 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.420 0.580 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.148 0.852 45 H 0.146 0.854 46 H 0.137 0.863 47 H 0.122 0.878 48 H 0.101 0.899 49 H 0.035 0.965 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -32.037 -0.613 32.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.377 4.377 8 H 0.094 0.906 9 N -0.353 5.353 10 C 0.057 3.943 11 C -0.164 4.164 12 C 0.040 3.960 13 H 0.086 0.914 14 N -0.348 5.348 15 C 0.298 3.702 16 O -0.456 6.456 17 C 0.001 3.999 18 H 0.142 0.858 19 C -0.180 4.180 20 C -0.179 4.179 21 C 0.017 3.983 22 H 0.105 0.895 23 C -0.111 4.111 24 C -0.090 4.090 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.156 4.156 29 C -0.144 4.144 30 O -0.294 6.294 31 C 0.003 3.997 32 H 0.059 0.941 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.258 0.742 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.166 0.834 45 H 0.164 0.836 46 H 0.155 0.845 47 H 0.140 0.860 48 H 0.119 0.881 49 H 0.053 0.947 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.471 -31.410 -1.475 31.761 hybrid contribution 0.207 1.676 -0.022 1.689 sum 4.679 -29.734 -1.497 30.137 Atomic orbital electron populations 1.70153 1.06123 1.25509 1.57599 1.25658 0.96725 1.00905 1.02224 0.85074 0.77886 0.79174 0.77288 1.21588 1.21508 1.19395 1.19397 0.91515 0.83952 1.42851 0.90602 1.44685 1.02763 1.01762 1.86098 1.20971 0.83432 0.91610 0.98290 1.22991 0.95781 0.95630 1.01992 1.21775 0.95877 0.79609 0.98748 0.91390 1.45614 1.47704 1.08530 1.33001 1.21030 0.78103 0.89308 0.81724 1.90727 1.48175 1.75358 1.31366 1.22989 0.97201 0.89083 0.90600 0.85784 1.22972 1.00145 0.99596 0.95267 1.23018 1.00804 0.98200 0.95877 1.23260 0.95905 0.87551 0.91627 0.89453 1.20755 0.96087 1.01642 0.92612 1.19994 0.99644 0.94089 0.95284 1.21352 0.99654 0.94595 0.98305 1.21480 0.99574 1.00765 0.92576 1.21424 1.00177 0.93316 1.00245 1.21357 1.00335 0.96749 0.97139 1.21167 1.00491 0.99228 0.93508 1.89343 1.62516 1.38792 1.38742 1.21927 0.95010 0.85810 0.96986 0.94128 0.96813 0.96340 0.89222 0.88463 0.74219 0.85934 0.91884 0.90452 0.86729 0.91654 0.86419 0.83433 0.83649 0.84486 0.86001 0.88083 0.94696 0.96219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.32 10.36 21.65 0.22 -57.10 16 2 C -0.06 -3.60 5.48 84.86 0.46 -3.14 16 3 Si 0.98 46.99 29.56 68.60 2.03 49.02 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.25 -14.54 10.26 84.03 0.86 -13.68 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 9 N -0.63 -33.46 3.40 -691.88 -2.35 -35.81 16 10 C 0.18 8.93 5.38 86.73 0.47 9.39 16 11 C -0.13 -4.26 6.59 31.78 0.21 -4.05 16 12 C 0.15 5.29 3.37 46.38 0.16 5.45 16 13 H 0.07 2.88 7.63 -2.39 -0.02 2.86 16 14 N -0.69 -18.33 5.20 -435.97 -2.27 -20.60 16 15 C 0.51 15.43 7.08 87.66 0.62 16.05 16 16 O -0.58 -24.56 16.25 15.21 0.25 -24.31 16 17 C 0.06 1.27 3.72 30.35 0.11 1.38 16 18 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 19 C -0.14 -1.96 6.60 31.61 0.21 -1.76 16 20 C -0.14 -1.55 6.63 31.61 0.21 -1.34 16 21 C 0.07 1.14 3.24 31.10 0.10 1.24 16 22 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 23 C -0.07 -1.13 4.97 29.85 0.15 -0.99 16 24 C -0.09 -1.71 5.04 -19.87 -0.10 -1.81 16 25 C -0.12 -1.77 9.70 22.27 0.22 -1.55 16 26 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 27 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 28 C -0.14 -2.93 10.05 22.27 0.22 -2.70 16 29 C -0.13 -2.99 9.61 22.27 0.21 -2.78 16 30 O -0.37 -9.60 10.42 -130.71 -1.36 -10.96 16 31 C 0.13 5.70 6.93 86.85 0.60 6.30 16 32 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 33 H 0.01 0.76 7.30 -2.39 -0.02 0.74 16 34 H 0.02 0.99 7.61 -2.39 -0.02 0.97 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.10 2.66 8.00 -2.39 -0.02 2.64 16 37 H 0.42 7.29 8.54 -92.71 -0.79 6.50 16 38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 1.16 7.86 -2.39 -0.02 1.14 16 40 H 0.08 0.92 7.87 -2.39 -0.02 0.90 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 1.24 8.09 -2.38 -0.02 1.22 16 43 H 0.12 1.03 8.08 -2.38 -0.02 1.01 16 44 H 0.15 1.23 8.06 -2.92 -0.02 1.21 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 48 H 0.10 2.78 8.06 -2.91 -0.02 2.76 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -82.43 405.66 1.82 -80.61 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.13 Total: 16.75 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.16 Total: 2.40 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.39 Total: -113.51 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.11 Total: -35.27 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -82.43 1.82 -80.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015317683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.158 kcal (2) G-P(sol) polarization free energy of solvation -82.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds