Wall clock time and date at job start Wed Apr 1 2020 02:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99350 * 2 1 4 4 H 1.48501 * 109.46969 * 239.99541 * 3 2 1 5 5 H 1.48498 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46897 * 119.99944 * 3 2 1 7 7 C 1.38804 * 120.00642 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00365 * 165.62666 * 7 2 1 9 9 N 1.36938 * 120.00082 * 345.62558 * 7 2 1 10 10 C 1.46928 * 120.62903 * 328.64681 * 9 7 2 11 11 C 1.53198 * 108.77350 * 233.62591 * 10 9 7 12 12 C 1.53041 * 109.31139 * 305.36343 * 11 10 9 13 13 C 1.53081 * 109.65771 * 61.30216 * 12 11 10 14 14 C 1.46930 * 120.63347 * 148.66061 * 9 7 2 15 15 H 1.08995 * 109.58746 * 246.30447 * 14 9 7 16 16 C 1.53006 * 109.58061 * 6.58927 * 14 9 7 17 17 N 1.46496 * 109.46972 * 299.11514 * 16 14 9 18 18 C 1.34782 * 119.99744 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00018 * 5.22862 * 18 17 16 20 20 C 1.50700 * 119.99955 * 185.22618 * 18 17 16 21 21 H 1.08992 * 109.33687 * 43.93922 * 20 18 17 22 22 O 1.42721 * 109.33765 * 163.61755 * 20 18 17 23 23 C 1.43212 * 113.13630 * 171.83199 * 22 20 18 24 24 C 1.52974 * 108.47378 * 289.31525 * 23 22 20 25 25 C 1.50736 * 109.76081 * 49.21775 * 24 23 22 26 26 C 1.38600 * 118.76260 * 163.16172 * 25 24 23 27 27 C 1.38063 * 120.27534 * 179.77406 * 26 25 24 28 28 C 1.38259 * 119.86368 * 0.18143 * 27 26 25 29 29 C 1.38051 * 119.89549 * 359.56385 * 28 27 26 30 30 C 1.37903 * 121.35321 * 342.98187 * 25 24 23 31 31 H 0.96994 * 120.00777 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58485 * 353.40835 * 10 9 7 33 33 H 1.08994 * 109.58707 * 113.84323 * 10 9 7 34 34 H 1.09003 * 109.49636 * 65.31235 * 11 10 9 35 35 H 1.08999 * 109.49530 * 185.41441 * 11 10 9 36 36 H 1.08994 * 109.45722 * 181.38226 * 12 11 10 37 37 H 1.08998 * 109.46249 * 301.36272 * 12 11 10 38 38 H 1.08999 * 109.62247 * 178.82954 * 13 12 11 39 39 H 1.09004 * 109.38941 * 58.71761 * 13 12 11 40 40 H 1.09005 * 109.46520 * 179.11527 * 16 14 9 41 41 H 1.08995 * 109.47460 * 59.11773 * 16 14 9 42 42 H 0.96999 * 120.00194 * 0.02562 * 17 16 14 43 43 H 1.09001 * 109.63654 * 169.61738 * 23 22 20 44 44 H 1.08998 * 109.80536 * 49.10691 * 23 22 20 45 45 H 1.09003 * 109.42100 * 289.12881 * 24 23 22 46 46 H 1.08997 * 109.42088 * 169.30910 * 24 23 22 47 47 H 1.07996 * 119.85964 * 359.74994 * 26 25 24 48 48 H 1.08009 * 120.06608 * 179.90044 * 27 26 25 49 49 H 1.08006 * 120.05308 * 179.80493 * 28 27 26 50 50 H 1.08003 * 119.84929 * 180.28625 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0650 -1.2167 -0.2316 9 7 1.3579 -2.3693 0.2955 10 6 0.2222 -2.3772 1.2277 11 6 0.4910 -3.4136 2.3234 12 6 0.7829 -4.7696 1.6768 13 6 2.0309 -4.6625 0.7967 14 6 1.7804 -3.6377 -0.3140 15 1 0.9972 -4.0028 -0.9782 16 6 3.0684 -3.4198 -1.1107 17 7 2.8242 -2.4451 -2.1767 18 6 3.8226 -2.0954 -3.0118 19 8 4.8958 -2.6560 -2.9421 20 6 3.6055 -1.0079 -4.0322 21 1 3.0821 -0.1738 -3.5649 22 8 4.8691 -0.5589 -4.5205 23 6 4.7565 0.3426 -5.6277 24 6 4.2816 -0.4467 -6.8490 25 6 3.0833 -1.2836 -6.4805 26 6 2.2886 -1.7937 -7.4951 27 6 1.1862 -2.5680 -7.1932 28 6 0.8713 -2.8326 -5.8732 29 6 1.6653 -2.3293 -4.8622 30 6 2.7712 -1.5495 -5.1638 31 1 -0.4851 0.8399 -0.0004 32 1 0.1117 -1.3905 1.6773 33 1 -0.6891 -2.6409 0.6911 34 1 1.3502 -3.1010 2.9169 35 1 -0.3848 -3.4983 2.9667 36 1 0.9504 -5.5143 2.4549 37 1 -0.0666 -5.0699 1.0634 38 1 2.2503 -5.6336 0.3530 39 1 2.8761 -4.3406 1.4050 40 1 3.3887 -4.3651 -1.5490 41 1 3.8473 -3.0448 -0.4469 42 1 1.9439 -2.0514 -2.2816 43 1 5.7283 0.7901 -5.8359 44 1 4.0351 1.1256 -5.3944 45 1 5.0851 -1.0968 -7.1953 46 1 4.0088 0.2464 -7.6448 47 1 2.5327 -1.5842 -8.5261 48 1 0.5683 -2.9625 -7.9865 49 1 0.0078 -3.4353 -5.6334 50 1 1.4213 -2.5403 -3.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024591149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:29 Heat of formation + Delta-G solvation = -31.071767 kcal Electronic energy + Delta-G solvation = -31952.807302 eV Core-core repulsion = 27945.350538 eV Total energy + Delta-G solvation = -4007.456763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.64838 -38.84767 -37.78243 -37.25053 -34.21976 -33.11962 -33.06321 -31.96883 -30.53929 -29.93834 -29.49419 -26.76553 -25.61059 -24.48162 -23.88183 -22.35979 -22.16478 -20.72502 -20.42866 -19.80071 -19.11057 -17.32392 -17.09501 -16.37327 -16.22157 -15.68477 -15.53511 -15.23882 -14.91543 -14.48758 -14.14812 -14.07842 -13.79982 -13.51904 -13.49358 -13.39739 -13.30031 -12.87865 -12.64292 -12.45576 -12.40022 -12.07802 -11.92595 -11.77013 -11.65147 -11.25109 -11.03769 -10.97009 -10.80087 -10.66407 -10.57364 -10.32182 -10.17736 -10.02298 -9.62616 -9.61658 -9.49676 -9.32953 -8.73624 -8.61503 -8.51583 -8.25465 -6.69374 -5.88179 -3.34630 1.28916 1.37963 3.01429 3.30687 3.36640 3.37379 3.41508 3.78071 4.25984 4.39922 4.61167 4.65169 4.78331 5.01122 5.09025 5.13422 5.17890 5.22798 5.29038 5.38327 5.40877 5.47905 5.51656 5.62067 5.64653 5.68715 5.72008 5.82175 5.93902 5.97421 6.03333 6.06047 6.13759 6.28318 6.34452 6.39526 6.42276 6.52557 6.53753 6.57932 6.68621 6.71314 6.83197 6.94836 6.97817 7.04810 7.16728 7.34961 7.60969 7.75632 8.17909 8.36989 8.79243 9.12499 9.73950 10.32461 11.18526 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.004241 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.974196 B = 6600.609180 C = 7453.759646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.161 3.839 15 H 0.032 0.968 16 C 0.135 3.865 17 N -0.692 5.692 18 C 0.524 3.476 19 O -0.537 6.537 20 C 0.113 3.887 21 H 0.099 0.901 22 O -0.346 6.346 23 C 0.056 3.944 24 C -0.114 4.114 25 C -0.069 4.069 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.106 4.106 30 C -0.106 4.106 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.414 0.586 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.126 0.874 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -3.829 -10.915 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.190 4.190 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.383 4.383 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.054 3.946 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.346 5.346 18 C 0.308 3.692 19 O -0.414 6.414 20 C 0.052 3.948 21 H 0.116 0.884 22 O -0.263 6.263 23 C -0.021 4.021 24 C -0.152 4.152 25 C -0.069 4.069 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.135 4.135 29 C -0.124 4.124 30 C -0.107 4.107 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.121 0.879 44 H 0.076 0.924 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.144 0.856 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.850 -4.118 -10.767 11.675 hybrid contribution -0.372 1.257 -0.073 1.312 sum 1.478 -2.861 -10.841 11.309 Atomic orbital electron populations 1.69988 1.05101 1.25667 1.53381 1.25060 0.95170 0.98067 1.00677 0.86569 0.79082 0.83820 0.78576 1.20713 1.21598 1.20892 1.19154 0.92094 0.84087 1.43001 0.91316 1.44064 1.36620 1.01973 1.48524 1.20745 0.88577 0.97429 0.88370 1.22195 1.00007 0.96574 0.99585 1.21362 0.97602 0.97369 0.98128 1.21944 0.98297 0.98233 0.98237 1.20732 0.93193 0.88563 0.92142 0.95075 1.21328 0.98445 0.90759 0.88337 1.46101 1.13824 1.44255 1.30462 1.19709 0.84704 0.83313 0.81475 1.90651 1.25721 1.53929 1.71139 1.20797 0.85354 0.96793 0.91903 0.88395 1.88177 1.25702 1.63667 1.48789 1.22688 1.02434 0.91470 0.85526 1.21141 0.96076 0.98803 0.99137 1.19435 0.96586 0.98677 0.92228 1.20991 0.95630 0.98891 0.98469 1.21112 0.97246 0.98524 0.96576 1.21098 0.99646 1.00140 0.92659 1.21358 0.94020 0.96423 1.00627 1.19860 0.96941 0.99907 0.93955 0.93520 0.89874 0.96345 0.92815 0.93539 0.93713 0.92906 0.92963 0.92054 0.92460 0.91426 0.74625 0.87921 0.92377 0.89560 0.89697 0.86043 0.86009 0.85648 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.72 11.28 55.49 0.63 -23.09 16 2 C 0.01 0.25 4.95 -17.44 -0.09 0.16 16 3 Si 0.89 20.73 29.58 -169.99 -5.03 15.70 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.18 7.00 -15.06 -0.11 -6.29 16 8 H 0.07 1.74 5.88 -52.48 -0.31 1.43 16 9 N -0.59 -13.06 2.97 -164.77 -0.49 -13.55 16 10 C 0.17 3.83 5.27 -3.71 -0.02 3.81 16 11 C -0.14 -2.62 6.09 -26.61 -0.16 -2.78 16 12 C -0.11 -1.71 5.88 -26.67 -0.16 -1.87 16 13 C -0.13 -2.10 5.38 -26.59 -0.14 -2.24 16 14 C 0.16 3.03 3.00 -67.60 -0.20 2.82 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.54 4.43 -4.04 -0.02 2.52 16 17 N -0.69 -13.31 2.96 -60.29 -0.18 -13.49 16 18 C 0.52 10.60 6.63 -10.98 -0.07 10.52 16 19 O -0.54 -12.47 16.58 -13.90 -0.23 -12.70 16 20 C 0.11 2.03 3.15 -29.05 -0.09 1.94 16 21 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 22 O -0.35 -6.18 10.01 -54.69 -0.55 -6.73 16 23 C 0.06 0.71 6.84 37.14 0.25 0.97 16 24 C -0.11 -1.30 6.00 -27.88 -0.17 -1.47 16 25 C -0.07 -0.95 5.78 -104.59 -0.60 -1.56 16 26 C -0.12 -1.44 9.67 -39.51 -0.38 -1.82 16 27 C -0.12 -1.35 10.05 -39.64 -0.40 -1.75 16 28 C -0.12 -1.53 10.05 -39.64 -0.40 -1.93 16 29 C -0.11 -1.63 9.08 -39.50 -0.36 -1.99 16 30 C -0.11 -1.70 5.45 -104.61 -0.57 -2.27 16 31 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.08 2.07 6.23 -51.93 -0.32 1.75 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.39 7.38 -51.93 -0.38 1.01 16 42 H 0.41 8.12 5.63 -40.82 -0.23 7.89 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 49 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 50 H 0.13 2.11 4.94 -52.48 -0.26 1.85 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -29.63 385.86 -11.54 -41.17 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.82 Total: 10.10 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.68 Total: -3.22 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.04 Total: -50.13 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.78 Total: -19.43 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.63 -11.54 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024591149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.097 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds