Wall clock time and date at job start Wed Apr 1 2020 02:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 119.99350 * 2 1 4 4 H 1.48501 * 109.46969 * 239.99541 * 3 2 1 5 5 H 1.48498 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46897 * 119.99944 * 3 2 1 7 7 C 1.38804 * 120.00642 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00365 * 165.62666 * 7 2 1 9 9 N 1.36938 * 120.00082 * 345.62558 * 7 2 1 10 10 C 1.46928 * 120.62903 * 328.64681 * 9 7 2 11 11 C 1.53198 * 108.77350 * 233.62591 * 10 9 7 12 12 C 1.53041 * 109.31139 * 305.36343 * 11 10 9 13 13 C 1.53081 * 109.65771 * 61.30216 * 12 11 10 14 14 C 1.46930 * 120.63347 * 148.66061 * 9 7 2 15 15 H 1.08995 * 109.58746 * 246.30447 * 14 9 7 16 16 C 1.53006 * 109.58061 * 6.58927 * 14 9 7 17 17 N 1.46496 * 109.46972 * 299.11514 * 16 14 9 18 18 C 1.34782 * 119.99744 * 180.02562 * 17 16 14 19 19 O 1.21279 * 120.00018 * 5.22862 * 18 17 16 20 20 C 1.50700 * 119.99955 * 185.22618 * 18 17 16 21 21 H 1.08992 * 109.33687 * 43.93922 * 20 18 17 22 22 O 1.42721 * 109.33765 * 163.61755 * 20 18 17 23 23 C 1.43212 * 113.13630 * 171.83199 * 22 20 18 24 24 C 1.52974 * 108.47378 * 289.31525 * 23 22 20 25 25 C 1.50736 * 109.76081 * 49.21775 * 24 23 22 26 26 C 1.38600 * 118.76260 * 163.16172 * 25 24 23 27 27 C 1.38063 * 120.27534 * 179.77406 * 26 25 24 28 28 C 1.38259 * 119.86368 * 0.18143 * 27 26 25 29 29 C 1.38051 * 119.89549 * 359.56385 * 28 27 26 30 30 C 1.37903 * 121.35321 * 342.98187 * 25 24 23 31 31 H 0.96994 * 120.00777 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.58485 * 353.40835 * 10 9 7 33 33 H 1.08994 * 109.58707 * 113.84323 * 10 9 7 34 34 H 1.09003 * 109.49636 * 65.31235 * 11 10 9 35 35 H 1.08999 * 109.49530 * 185.41441 * 11 10 9 36 36 H 1.08994 * 109.45722 * 181.38226 * 12 11 10 37 37 H 1.08998 * 109.46249 * 301.36272 * 12 11 10 38 38 H 1.08999 * 109.62247 * 178.82954 * 13 12 11 39 39 H 1.09004 * 109.38941 * 58.71761 * 13 12 11 40 40 H 1.09005 * 109.46520 * 179.11527 * 16 14 9 41 41 H 1.08995 * 109.47460 * 59.11773 * 16 14 9 42 42 H 0.96999 * 120.00194 * 0.02562 * 17 16 14 43 43 H 1.09001 * 109.63654 * 169.61738 * 23 22 20 44 44 H 1.08998 * 109.80536 * 49.10691 * 23 22 20 45 45 H 1.09003 * 109.42100 * 289.12881 * 24 23 22 46 46 H 1.08997 * 109.42088 * 169.30910 * 24 23 22 47 47 H 1.07996 * 119.85964 * 359.74994 * 26 25 24 48 48 H 1.08009 * 120.06608 * 179.90044 * 27 26 25 49 49 H 1.08006 * 120.05308 * 179.80493 * 28 27 26 50 50 H 1.08003 * 119.84929 * 180.28625 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0650 -1.2167 -0.2316 9 7 1.3579 -2.3693 0.2955 10 6 0.2222 -2.3772 1.2277 11 6 0.4910 -3.4136 2.3234 12 6 0.7829 -4.7696 1.6768 13 6 2.0309 -4.6625 0.7967 14 6 1.7804 -3.6377 -0.3140 15 1 0.9972 -4.0028 -0.9782 16 6 3.0684 -3.4198 -1.1107 17 7 2.8242 -2.4451 -2.1767 18 6 3.8226 -2.0954 -3.0118 19 8 4.8958 -2.6560 -2.9421 20 6 3.6055 -1.0079 -4.0322 21 1 3.0821 -0.1738 -3.5649 22 8 4.8691 -0.5589 -4.5205 23 6 4.7565 0.3426 -5.6277 24 6 4.2816 -0.4467 -6.8490 25 6 3.0833 -1.2836 -6.4805 26 6 2.2886 -1.7937 -7.4951 27 6 1.1862 -2.5680 -7.1932 28 6 0.8713 -2.8326 -5.8732 29 6 1.6653 -2.3293 -4.8622 30 6 2.7712 -1.5495 -5.1638 31 1 -0.4851 0.8399 -0.0004 32 1 0.1117 -1.3905 1.6773 33 1 -0.6891 -2.6409 0.6911 34 1 1.3502 -3.1010 2.9169 35 1 -0.3848 -3.4983 2.9667 36 1 0.9504 -5.5143 2.4549 37 1 -0.0666 -5.0699 1.0634 38 1 2.2503 -5.6336 0.3530 39 1 2.8761 -4.3406 1.4050 40 1 3.3887 -4.3651 -1.5490 41 1 3.8473 -3.0448 -0.4469 42 1 1.9439 -2.0514 -2.2816 43 1 5.7283 0.7901 -5.8359 44 1 4.0351 1.1256 -5.3944 45 1 5.0851 -1.0968 -7.1953 46 1 4.0088 0.2464 -7.6448 47 1 2.5327 -1.5842 -8.5261 48 1 0.5683 -2.9625 -7.9865 49 1 0.0078 -3.4353 -5.6334 50 1 1.4213 -2.5403 -3.8315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024591149.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:28 Heat of formation + Delta-G solvation = -46.134752 kcal Electronic energy + Delta-G solvation = -31953.460482 eV Core-core repulsion = 27945.350538 eV Total energy + Delta-G solvation = -4008.109943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.89428 -40.30001 -39.26807 -38.49801 -35.81083 -34.90717 -34.16253 -33.16532 -32.05363 -31.64387 -30.52848 -28.15885 -27.23051 -26.04307 -24.88750 -23.83858 -23.44536 -22.22926 -21.78970 -21.03248 -20.68183 -18.82043 -18.36256 -17.92444 -17.65926 -17.23881 -16.73328 -16.48751 -16.26799 -16.03660 -15.69967 -15.52882 -15.06597 -14.84546 -14.82138 -14.71959 -14.52662 -14.47354 -14.07509 -13.73719 -13.66277 -13.49555 -13.37648 -12.94790 -12.87907 -12.78669 -12.72403 -12.58684 -12.34865 -12.09784 -12.05809 -11.80994 -11.65642 -11.52723 -11.21436 -11.10004 -10.89289 -10.78877 -10.53034 -9.93438 -9.75916 -9.60149 -8.56211 -7.84509 -5.30956 0.24841 0.37793 1.38606 1.43740 1.47574 1.48599 1.97487 2.47326 2.74877 2.97416 3.30339 3.44820 3.54936 3.63365 3.77131 3.82931 3.95940 4.02639 4.11130 4.21985 4.22381 4.25112 4.27041 4.41756 4.51757 4.53317 4.54788 4.62786 4.66763 4.73700 4.77348 4.86050 4.89513 4.98965 5.00163 5.11345 5.13796 5.22311 5.28304 5.35627 5.43718 5.46137 5.52705 5.53258 5.53591 5.63023 5.74184 5.83748 5.92139 6.01500 6.43362 6.57220 7.17690 7.19828 7.87680 8.41156 9.19468 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.004241 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.974196 B = 6600.609180 C = 7453.759646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.029 4.029 3 Si 0.931 3.069 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.161 3.839 15 H 0.035 0.965 16 C 0.138 3.862 17 N -0.687 5.687 18 C 0.521 3.479 19 O -0.574 6.574 20 C 0.119 3.881 21 H 0.084 0.916 22 O -0.376 6.376 23 C 0.044 3.956 24 C -0.109 4.109 25 C -0.081 4.081 26 C -0.118 4.118 27 C -0.110 4.110 28 C -0.125 4.125 29 C -0.128 4.128 30 C -0.133 4.133 31 H 0.249 0.751 32 H 0.048 0.952 33 H 0.003 0.997 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.412 0.588 43 H 0.128 0.872 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.120 0.880 47 H 0.158 0.842 48 H 0.157 0.843 49 H 0.142 0.858 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -5.129 -13.014 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.225 4.225 3 Si 0.761 3.239 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.139 4.139 13 C -0.162 4.162 14 C 0.055 3.945 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.340 5.340 18 C 0.306 3.694 19 O -0.454 6.454 20 C 0.058 3.942 21 H 0.101 0.899 22 O -0.295 6.295 23 C -0.032 4.032 24 C -0.146 4.146 25 C -0.081 4.081 26 C -0.135 4.135 27 C -0.127 4.127 28 C -0.143 4.143 29 C -0.147 4.147 30 C -0.133 4.133 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.251 0.749 43 H 0.146 0.854 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.138 0.862 47 H 0.175 0.825 48 H 0.175 0.825 49 H 0.160 0.840 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.643 -5.429 -12.863 14.058 hybrid contribution -0.302 1.630 0.526 1.739 sum 1.341 -3.799 -12.337 12.978 Atomic orbital electron populations 1.70086 1.05812 1.25455 1.55210 1.25446 0.95607 0.99816 1.01681 0.85918 0.78072 0.81886 0.78070 1.20659 1.21771 1.21537 1.19126 0.91572 0.85049 1.41202 0.92458 1.44230 1.36474 1.02574 1.49174 1.20571 0.87974 0.96949 0.89130 1.22056 1.00459 0.96647 0.98320 1.21342 0.97377 0.96457 0.98745 1.21903 0.98385 0.98602 0.97275 1.20878 0.92877 0.87691 0.93012 0.94739 1.21330 0.97947 0.91223 0.88038 1.46118 1.13563 1.44058 1.30242 1.20201 0.84058 0.83473 0.81618 1.90607 1.26950 1.55517 1.72323 1.20584 0.85883 0.95422 0.92350 0.89878 1.88120 1.25784 1.64836 1.50738 1.23065 1.04156 0.91122 0.84847 1.21190 0.95263 0.99045 0.99096 1.19816 0.97672 0.98967 0.91648 1.21415 0.94817 0.97701 0.99614 1.21556 0.97214 0.97326 0.96622 1.21366 0.99792 1.00116 0.93052 1.21353 0.94985 0.97768 1.00583 1.19813 0.97432 1.01695 0.94408 0.94181 0.93343 0.97888 0.93689 0.91675 0.90739 0.92320 0.89934 0.92846 0.90844 0.93501 0.74897 0.85425 0.92150 0.89011 0.86175 0.82479 0.82514 0.84027 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.37 11.28 21.65 0.24 -50.13 16 2 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 3 Si 0.93 43.98 29.58 68.60 2.03 46.01 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.24 -12.04 7.00 84.03 0.59 -11.45 16 8 H 0.06 3.02 5.88 -2.91 -0.02 3.00 16 9 N -0.60 -27.19 2.97 -675.22 -2.01 -29.20 16 10 C 0.18 8.01 5.27 86.36 0.45 8.46 16 11 C -0.14 -4.78 6.09 30.67 0.19 -4.59 16 12 C -0.10 -2.99 5.88 30.64 0.18 -2.81 16 13 C -0.12 -3.79 5.38 30.68 0.17 -3.62 16 14 C 0.16 6.05 3.00 44.98 0.13 6.18 16 15 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 16 C 0.14 5.31 4.43 86.38 0.38 5.69 16 17 N -0.69 -27.61 2.96 -463.05 -1.37 -28.98 16 18 C 0.52 22.07 6.63 87.66 0.58 22.65 16 19 O -0.57 -27.72 16.58 15.57 0.26 -27.46 16 20 C 0.12 4.48 3.15 29.09 0.09 4.57 16 21 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 22 O -0.38 -13.78 10.01 -130.38 -1.31 -15.08 16 23 C 0.04 1.08 6.84 71.97 0.49 1.58 16 24 C -0.11 -2.22 6.00 29.85 0.18 -2.05 16 25 C -0.08 -2.10 5.78 -19.85 -0.11 -2.21 16 26 C -0.12 -2.38 9.67 22.31 0.22 -2.17 16 27 C -0.11 -2.19 10.05 22.23 0.22 -1.96 16 28 C -0.13 -3.11 10.05 22.23 0.22 -2.88 16 29 C -0.13 -4.02 9.08 22.32 0.20 -3.81 16 30 C -0.13 -4.30 5.45 -19.86 -0.11 -4.41 16 31 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.05 2.49 6.23 -2.39 -0.01 2.48 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.05 2.00 7.38 -2.39 -0.02 1.98 16 42 H 0.41 17.07 5.63 -92.71 -0.52 16.55 16 43 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 45 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 48 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 49 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 50 H 0.12 3.87 4.94 -2.91 -0.01 3.86 16 Total: -1.00 -67.32 385.86 2.77 -64.55 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: 0.42 Total: 34.20 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 4.50 Total: 6.10 kcal Atomic # 7 Polarization: -105.18 SS G_CDS: -3.13 Total: -108.31 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.05 Total: -42.55 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.32 2.77 -64.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024591149.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.412 kcal (2) G-P(sol) polarization free energy of solvation -67.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds