Wall clock time and date at job start Wed Apr 1 2020 02:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47028 * 275.61704 * 3 2 1 5 5 H 1.48506 * 109.47262 * 35.61634 * 3 2 1 6 6 H 1.48502 * 109.47299 * 155.61664 * 3 2 1 7 7 C 1.38811 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00217 * 346.68420 * 7 2 1 9 9 N 1.36941 * 119.99625 * 166.95407 * 7 2 1 10 10 C 1.46921 * 120.63211 * 329.90712 * 9 7 2 11 11 C 1.53193 * 108.77271 * 233.58153 * 10 9 7 12 12 C 1.53037 * 109.31605 * 305.36390 * 11 10 9 13 13 C 1.53045 * 109.53554 * 61.36541 * 12 11 10 14 14 C 1.46924 * 120.62742 * 149.62034 * 9 7 2 15 15 H 1.08996 * 109.58946 * 246.20739 * 14 9 7 16 16 C 1.53004 * 109.58996 * 6.63271 * 14 9 7 17 17 N 1.46499 * 109.47578 * 185.78508 * 16 14 9 18 18 C 1.34775 * 119.99902 * 175.67350 * 17 16 14 19 19 O 1.21276 * 120.00096 * 4.26237 * 18 17 16 20 20 C 1.50699 * 119.99747 * 184.26196 * 18 17 16 21 21 H 1.09006 * 109.43827 * 325.66050 * 20 18 17 22 22 C 1.53066 * 109.43527 * 205.79032 * 20 18 17 23 23 C 1.53413 * 108.30301 * 191.73936 * 22 20 18 24 24 O 1.42832 * 108.37125 * 64.71068 * 23 22 20 25 25 C 1.35849 * 117.85804 * 310.79654 * 24 23 22 26 26 C 1.39139 * 118.49879 * 196.97505 * 25 24 23 27 27 C 1.37967 * 120.21766 * 180.39628 * 26 25 24 28 28 C 1.38288 * 119.95785 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.97914 * 359.93623 * 28 27 26 30 30 C 1.38373 * 121.80275 * 17.26051 * 25 24 23 31 31 H 0.96999 * 119.99942 * 5.02041 * 1 2 3 32 32 H 1.08999 * 109.58705 * 353.37042 * 10 9 7 33 33 H 1.09000 * 109.58504 * 113.79597 * 10 9 7 34 34 H 1.09005 * 109.50015 * 65.31964 * 11 10 9 35 35 H 1.09005 * 109.49534 * 185.41187 * 11 10 9 36 36 H 1.09000 * 109.46626 * 181.38540 * 12 11 10 37 37 H 1.08999 * 109.46267 * 301.34884 * 12 11 10 38 38 H 1.08998 * 109.49736 * 58.59001 * 13 12 11 39 39 H 1.09003 * 109.49794 * 178.65591 * 13 12 11 40 40 H 1.09008 * 109.46853 * 305.78684 * 16 14 9 41 41 H 1.08998 * 109.47075 * 65.78367 * 16 14 9 42 42 H 0.97003 * 119.99815 * 355.68087 * 17 16 14 43 43 H 1.08997 * 109.69934 * 311.43967 * 22 20 18 44 44 H 1.08999 * 109.70188 * 72.04198 * 22 20 18 45 45 H 1.08995 * 109.68421 * 304.99274 * 23 22 20 46 46 H 1.08994 * 109.71601 * 184.44701 * 23 22 20 47 47 H 1.08004 * 119.89143 * 0.39542 * 26 25 24 48 48 H 1.08002 * 120.01925 * 179.97438 * 27 26 25 49 49 H 1.07993 * 120.00913 * 179.91021 * 28 27 26 50 50 H 1.08001 * 119.83639 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3790 2.1149 -1.3934 5 1 1.5120 2.6155 0.8154 6 1 3.6021 1.4088 0.5780 7 6 2.0102 -1.2022 0.0005 8 1 1.4920 -2.1248 0.2164 9 7 3.3531 -1.2175 -0.2672 10 6 3.9510 -0.2110 -1.1549 11 6 4.7347 -0.9297 -2.2578 12 6 5.7457 -1.8852 -1.6199 13 6 5.0040 -2.9364 -0.7910 14 6 4.2244 -2.2371 0.3329 15 1 4.9209 -1.7619 1.0237 16 6 3.3724 -3.2626 1.0836 17 7 4.2475 -4.1977 1.7949 18 6 3.7156 -5.1399 2.5984 19 8 2.5115 -5.2640 2.6730 20 6 4.6171 -6.0393 3.4043 21 1 5.5261 -6.2432 2.8382 22 6 3.8938 -7.3563 3.6962 23 6 4.6997 -8.1251 4.7511 24 8 4.6846 -7.3731 5.9653 25 6 4.9958 -6.0524 5.8980 26 6 5.3366 -5.3899 7.0731 27 6 5.6509 -4.0468 7.0468 28 6 5.6272 -3.3553 5.8495 29 6 5.2902 -4.0099 4.6811 30 6 4.9758 -5.3586 4.7009 31 1 -0.4850 0.8368 -0.0735 32 1 3.1637 0.3957 -1.6021 33 1 4.6258 0.4259 -0.5830 34 1 4.0451 -1.4951 -2.8847 35 1 5.2621 -0.1954 -2.8668 36 1 6.3217 -2.3797 -2.4021 37 1 6.4195 -1.3225 -0.9738 38 1 4.3120 -3.4829 -1.4317 39 1 5.7231 -3.6308 -0.3564 40 1 2.7317 -2.7480 1.7999 41 1 2.7549 -3.8118 0.3729 42 1 5.2098 -4.1387 1.6875 43 1 2.8935 -7.1496 4.0768 44 1 3.8251 -7.9479 2.7833 45 1 5.7271 -8.2498 4.4092 46 1 4.2475 -9.1025 4.9190 47 1 5.3551 -5.9288 8.0089 48 1 5.9146 -3.5356 7.9610 49 1 5.8717 -2.3036 5.8282 50 1 5.2728 -3.4677 3.7472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024710548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:18 Heat of formation + Delta-G solvation = -27.400249 kcal Electronic energy + Delta-G solvation = -31067.847751 eV Core-core repulsion = 27060.550196 eV Total energy + Delta-G solvation = -4007.297554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.18483 -39.33959 -38.08490 -37.64640 -34.63874 -34.33243 -33.16238 -31.21997 -30.80529 -30.51690 -30.33676 -27.14962 -25.66000 -24.77287 -23.86291 -22.88726 -22.55599 -21.02547 -20.68888 -19.87413 -19.37595 -18.12256 -17.18721 -16.86454 -16.52527 -16.29257 -15.63196 -15.40208 -15.11005 -14.92637 -14.45295 -14.08382 -13.97318 -13.86642 -13.79213 -13.54895 -13.42342 -13.37190 -13.13317 -12.95759 -12.57444 -12.37870 -12.06602 -11.89849 -11.68340 -11.56333 -11.37914 -11.19038 -11.05986 -10.90798 -10.77326 -10.60119 -10.48759 -10.25208 -9.85285 -9.73911 -9.52513 -9.39002 -8.92533 -8.73299 -8.69516 -8.30286 -6.96884 -5.91169 -3.37925 1.12367 1.29523 2.75843 3.07163 3.27032 3.29631 3.44086 3.47348 3.65275 4.31374 4.42250 4.48827 4.51034 4.69652 4.89270 4.91765 4.95269 4.98138 5.06118 5.18790 5.24168 5.29996 5.31674 5.34821 5.36210 5.38882 5.47279 5.66748 5.67790 5.76604 5.84411 5.91285 5.96053 6.07051 6.12061 6.12943 6.27995 6.29390 6.32589 6.39629 6.41077 6.51461 6.60103 6.61734 6.62228 6.70275 6.78752 6.96755 7.25547 7.66676 7.95063 8.32805 8.40959 8.90130 9.69054 10.04674 11.22535 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.003058 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.244281 B = 9153.958586 C = 9544.630574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.890 3.110 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.265 1.265 7 C -0.268 4.268 8 H 0.092 0.908 9 N -0.600 5.600 10 C 0.127 3.873 11 C -0.137 4.137 12 C -0.109 4.109 13 C -0.132 4.132 14 C 0.170 3.830 15 H 0.034 0.966 16 C 0.126 3.874 17 N -0.726 5.726 18 C 0.521 3.479 19 O -0.527 6.527 20 C -0.063 4.063 21 H 0.101 0.899 22 C -0.147 4.147 23 C 0.064 3.936 24 O -0.316 6.316 25 C 0.140 3.860 26 C -0.152 4.152 27 C -0.084 4.084 28 C -0.148 4.148 29 C -0.081 4.081 30 C -0.151 4.151 31 H 0.263 0.737 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.394 0.606 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.130 0.870 48 H 0.129 0.871 49 H 0.126 0.874 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.031 -12.704 7.852 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.173 4.173 3 Si 0.722 3.278 4 H -0.218 1.218 5 H -0.234 1.234 6 H -0.190 1.190 7 C -0.397 4.397 8 H 0.110 0.890 9 N -0.325 5.325 10 C 0.002 3.998 11 C -0.176 4.176 12 C -0.147 4.147 13 C -0.171 4.171 14 C 0.063 3.937 15 H 0.052 0.948 16 C 0.004 3.996 17 N -0.378 5.378 18 C 0.305 3.695 19 O -0.402 6.402 20 C -0.084 4.084 21 H 0.119 0.881 22 C -0.185 4.185 23 C -0.011 4.011 24 O -0.230 6.230 25 C 0.095 3.905 26 C -0.171 4.171 27 C -0.103 4.103 28 C -0.167 4.167 29 C -0.099 4.099 30 C -0.152 4.152 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.228 0.772 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.129 0.871 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.144 0.856 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.897 -12.786 8.138 21.964 hybrid contribution 0.868 1.203 -0.540 1.578 sum 16.765 -11.583 7.598 21.747 Atomic orbital electron populations 1.69726 1.05685 1.26767 1.53205 1.25361 0.95250 0.97694 0.99033 0.86886 0.79919 0.84186 0.76797 1.21830 1.23375 1.19034 1.18955 0.81637 0.94386 1.44699 0.89022 1.44237 1.04964 1.32072 1.51196 1.21423 0.95967 0.91703 0.90742 1.22028 0.98123 0.98673 0.98806 1.21379 0.97436 0.97240 0.98619 1.22164 0.98810 0.97459 0.98710 1.20622 0.91523 0.89428 0.92130 0.94806 1.21630 0.92196 0.89591 0.96212 1.46218 1.10504 1.33816 1.47272 1.20091 0.88905 0.80924 0.79536 1.90740 1.14988 1.69599 1.64869 1.20160 0.99192 0.95228 0.93811 0.88149 1.22155 1.01125 0.94595 1.00593 1.22998 1.00329 0.94519 0.83247 1.85987 1.84546 1.18350 1.34113 1.18624 0.95384 0.83276 0.93233 1.20568 1.04700 0.95020 0.96763 1.20965 0.97828 0.93247 0.98214 1.21055 1.02866 1.00329 0.92416 1.21138 0.96503 0.92906 0.99380 1.19357 1.07399 0.95204 0.93259 0.92693 0.91244 0.95265 0.91768 0.92951 0.93139 0.92765 0.91649 0.93129 0.89512 0.91089 0.77198 0.88571 0.89278 0.91715 0.87095 0.85198 0.85354 0.85588 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.01 13.96 55.49 0.77 -27.23 16 2 C 0.03 0.75 5.35 -17.43 -0.09 0.65 16 3 Si 0.89 22.19 24.32 -169.99 -4.13 18.06 16 4 H -0.29 -7.03 6.82 56.52 0.39 -6.64 16 5 H -0.31 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.33 5.81 56.52 0.33 -6.00 16 7 C -0.27 -7.28 8.98 -15.06 -0.14 -7.41 16 8 H 0.09 2.69 6.51 -52.49 -0.34 2.35 16 9 N -0.60 -13.53 2.77 -164.52 -0.45 -13.99 16 10 C 0.13 2.65 4.11 -3.71 -0.02 2.64 16 11 C -0.14 -2.31 6.08 -26.61 -0.16 -2.48 16 12 C -0.11 -1.57 5.88 -26.69 -0.16 -1.73 16 13 C -0.13 -1.97 5.22 -26.38 -0.14 -2.11 16 14 C 0.17 3.07 3.01 -67.37 -0.20 2.86 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.13 2.32 3.83 -4.04 -0.02 2.31 16 17 N -0.73 -10.23 4.20 -60.29 -0.25 -10.48 16 18 C 0.52 7.95 6.17 -10.99 -0.07 7.88 16 19 O -0.53 -10.57 15.87 5.56 0.09 -10.48 16 20 C -0.06 -0.72 2.70 -92.86 -0.25 -0.97 16 21 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 22 C -0.15 -1.54 5.25 -26.48 -0.14 -1.68 16 23 C 0.06 0.55 7.03 37.37 0.26 0.81 16 24 O -0.32 -3.67 10.27 -19.27 -0.20 -3.87 16 25 C 0.14 1.73 6.47 -39.20 -0.25 1.47 16 26 C -0.15 -1.67 9.94 -39.35 -0.39 -2.06 16 27 C -0.08 -0.86 10.04 -39.66 -0.40 -1.26 16 28 C -0.15 -1.66 10.04 -39.61 -0.40 -2.06 16 29 C -0.08 -1.00 9.10 -39.53 -0.36 -1.36 16 30 C -0.15 -1.88 5.43 -104.44 -0.57 -2.44 16 31 H 0.26 7.70 8.32 -40.82 -0.34 7.36 16 32 H 0.07 1.61 4.42 -51.93 -0.23 1.38 16 33 H 0.03 0.61 6.60 -51.93 -0.34 0.27 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 40 H 0.09 1.92 7.27 -51.92 -0.38 1.54 16 41 H 0.07 1.45 7.76 -51.93 -0.40 1.05 16 42 H 0.39 4.25 7.34 -40.82 -0.30 3.95 16 43 H 0.10 1.28 7.44 -51.93 -0.39 0.89 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 48 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 49 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 50 H 0.13 1.56 6.08 -52.49 -0.32 1.24 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -33.71 380.48 -9.73 -43.43 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.80 Total: 5.75 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -3.48 Total: -6.94 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.07 Total: -51.70 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.11 Total: -14.35 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.13 Total: 18.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.71 -9.73 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024710548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.034 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds