Wall clock time and date at job start Wed Apr 1 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00061 * 2 1 4 4 H 1.48504 * 109.47028 * 275.61704 * 3 2 1 5 5 H 1.48506 * 109.47262 * 35.61634 * 3 2 1 6 6 H 1.48502 * 109.47299 * 155.61664 * 3 2 1 7 7 C 1.38811 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00217 * 346.68420 * 7 2 1 9 9 N 1.36941 * 119.99625 * 166.95407 * 7 2 1 10 10 C 1.46921 * 120.63211 * 329.90712 * 9 7 2 11 11 C 1.53193 * 108.77271 * 233.58153 * 10 9 7 12 12 C 1.53037 * 109.31605 * 305.36390 * 11 10 9 13 13 C 1.53045 * 109.53554 * 61.36541 * 12 11 10 14 14 C 1.46924 * 120.62742 * 149.62034 * 9 7 2 15 15 H 1.08996 * 109.58946 * 246.20739 * 14 9 7 16 16 C 1.53004 * 109.58996 * 6.63271 * 14 9 7 17 17 N 1.46499 * 109.47578 * 185.78508 * 16 14 9 18 18 C 1.34775 * 119.99902 * 175.67350 * 17 16 14 19 19 O 1.21276 * 120.00096 * 4.26237 * 18 17 16 20 20 C 1.50699 * 119.99747 * 184.26196 * 18 17 16 21 21 H 1.09006 * 109.43827 * 325.66050 * 20 18 17 22 22 C 1.53066 * 109.43527 * 205.79032 * 20 18 17 23 23 C 1.53413 * 108.30301 * 191.73936 * 22 20 18 24 24 O 1.42832 * 108.37125 * 64.71068 * 23 22 20 25 25 C 1.35849 * 117.85804 * 310.79654 * 24 23 22 26 26 C 1.39139 * 118.49879 * 196.97505 * 25 24 23 27 27 C 1.37967 * 120.21766 * 180.39628 * 26 25 24 28 28 C 1.38288 * 119.95785 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.97914 * 359.93623 * 28 27 26 30 30 C 1.38373 * 121.80275 * 17.26051 * 25 24 23 31 31 H 0.96999 * 119.99942 * 5.02041 * 1 2 3 32 32 H 1.08999 * 109.58705 * 353.37042 * 10 9 7 33 33 H 1.09000 * 109.58504 * 113.79597 * 10 9 7 34 34 H 1.09005 * 109.50015 * 65.31964 * 11 10 9 35 35 H 1.09005 * 109.49534 * 185.41187 * 11 10 9 36 36 H 1.09000 * 109.46626 * 181.38540 * 12 11 10 37 37 H 1.08999 * 109.46267 * 301.34884 * 12 11 10 38 38 H 1.08998 * 109.49736 * 58.59001 * 13 12 11 39 39 H 1.09003 * 109.49794 * 178.65591 * 13 12 11 40 40 H 1.09008 * 109.46853 * 305.78684 * 16 14 9 41 41 H 1.08998 * 109.47075 * 65.78367 * 16 14 9 42 42 H 0.97003 * 119.99815 * 355.68087 * 17 16 14 43 43 H 1.08997 * 109.69934 * 311.43967 * 22 20 18 44 44 H 1.08999 * 109.70188 * 72.04198 * 22 20 18 45 45 H 1.08995 * 109.68421 * 304.99274 * 23 22 20 46 46 H 1.08994 * 109.71601 * 184.44701 * 23 22 20 47 47 H 1.08004 * 119.89143 * 0.39542 * 26 25 24 48 48 H 1.08002 * 120.01925 * 179.97438 * 27 26 25 49 49 H 1.07993 * 120.00913 * 179.91021 * 28 27 26 50 50 H 1.08001 * 119.83639 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3790 2.1149 -1.3934 5 1 1.5120 2.6155 0.8154 6 1 3.6021 1.4088 0.5780 7 6 2.0102 -1.2022 0.0005 8 1 1.4920 -2.1248 0.2164 9 7 3.3531 -1.2175 -0.2672 10 6 3.9510 -0.2110 -1.1549 11 6 4.7347 -0.9297 -2.2578 12 6 5.7457 -1.8852 -1.6199 13 6 5.0040 -2.9364 -0.7910 14 6 4.2244 -2.2371 0.3329 15 1 4.9209 -1.7619 1.0237 16 6 3.3724 -3.2626 1.0836 17 7 4.2475 -4.1977 1.7949 18 6 3.7156 -5.1399 2.5984 19 8 2.5115 -5.2640 2.6730 20 6 4.6171 -6.0393 3.4043 21 1 5.5261 -6.2432 2.8382 22 6 3.8938 -7.3563 3.6962 23 6 4.6997 -8.1251 4.7511 24 8 4.6846 -7.3731 5.9653 25 6 4.9958 -6.0524 5.8980 26 6 5.3366 -5.3899 7.0731 27 6 5.6509 -4.0468 7.0468 28 6 5.6272 -3.3553 5.8495 29 6 5.2902 -4.0099 4.6811 30 6 4.9758 -5.3586 4.7009 31 1 -0.4850 0.8368 -0.0735 32 1 3.1637 0.3957 -1.6021 33 1 4.6258 0.4259 -0.5830 34 1 4.0451 -1.4951 -2.8847 35 1 5.2621 -0.1954 -2.8668 36 1 6.3217 -2.3797 -2.4021 37 1 6.4195 -1.3225 -0.9738 38 1 4.3120 -3.4829 -1.4317 39 1 5.7231 -3.6308 -0.3564 40 1 2.7317 -2.7480 1.7999 41 1 2.7549 -3.8118 0.3729 42 1 5.2098 -4.1387 1.6875 43 1 2.8935 -7.1496 4.0768 44 1 3.8251 -7.9479 2.7833 45 1 5.7271 -8.2498 4.4092 46 1 4.2475 -9.1025 4.9190 47 1 5.3551 -5.9288 8.0089 48 1 5.9146 -3.5356 7.9610 49 1 5.8717 -2.3036 5.8282 50 1 5.2728 -3.4677 3.7472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024710548.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:17 Heat of formation + Delta-G solvation = -50.096825 kcal Electronic energy + Delta-G solvation = -31068.831948 eV Core-core repulsion = 27060.550196 eV Total energy + Delta-G solvation = -4008.281752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.12696 -40.58800 -39.56896 -38.46025 -36.06772 -35.31144 -34.96095 -32.85825 -32.23009 -31.55044 -31.19015 -28.34486 -27.12748 -26.27814 -24.74513 -24.35468 -23.60629 -22.33700 -21.97834 -21.02102 -20.71427 -19.07521 -18.66470 -18.02767 -17.72202 -17.27524 -17.16632 -16.99778 -16.16532 -16.00026 -15.71648 -15.39812 -15.26860 -15.18834 -14.94313 -14.77663 -14.65697 -14.63909 -14.24719 -14.18385 -14.13525 -13.53820 -13.41027 -13.20340 -13.06728 -12.91046 -12.54263 -12.48834 -12.28999 -12.06508 -12.01299 -11.84204 -11.71430 -11.63379 -11.43101 -11.27042 -11.12934 -10.98743 -10.71098 -10.15586 -9.80962 -9.15657 -8.87845 -8.11684 -5.53695 0.26448 0.42868 1.28282 1.39855 1.48320 1.51913 2.01081 2.35912 2.40518 2.76208 3.11884 3.29040 3.43769 3.54661 3.67814 3.83561 3.89040 4.02621 4.05298 4.09726 4.12999 4.19943 4.24545 4.35969 4.39600 4.46593 4.50584 4.51378 4.52922 4.60970 4.66499 4.76505 4.83081 4.89949 4.99537 5.02177 5.05957 5.09804 5.15057 5.22524 5.27674 5.29064 5.32655 5.37254 5.42593 5.56616 5.61948 5.82121 5.88989 6.16496 6.44406 6.48123 6.91708 7.19155 7.61402 7.99551 9.06519 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013574 B = 0.003058 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.244281 B = 9153.958586 C = 9544.630574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.042 4.042 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.320 1.320 6 H -0.243 1.243 7 C -0.245 4.245 8 H 0.051 0.949 9 N -0.616 5.616 10 C 0.118 3.882 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.125 4.125 14 C 0.168 3.832 15 H 0.054 0.946 16 C 0.146 3.854 17 N -0.706 5.706 18 C 0.519 3.481 19 O -0.584 6.584 20 C -0.053 4.053 21 H 0.140 0.860 22 C -0.147 4.147 23 C 0.064 3.936 24 O -0.329 6.329 25 C 0.126 3.874 26 C -0.160 4.160 27 C -0.082 4.082 28 C -0.159 4.159 29 C -0.099 4.099 30 C -0.166 4.166 31 H 0.260 0.740 32 H 0.043 0.957 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.416 0.584 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.135 0.865 47 H 0.146 0.854 48 H 0.157 0.843 49 H 0.140 0.860 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.038 -13.328 7.938 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.236 4.236 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.250 1.250 6 H -0.167 1.167 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.342 5.342 10 C -0.006 4.006 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.163 4.163 14 C 0.062 3.938 15 H 0.072 0.928 16 C 0.021 3.979 17 N -0.359 5.359 18 C 0.306 3.694 19 O -0.463 6.463 20 C -0.074 4.074 21 H 0.157 0.843 22 C -0.185 4.185 23 C -0.010 4.010 24 O -0.244 6.244 25 C 0.080 3.920 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.177 4.177 29 C -0.117 4.117 30 C -0.168 4.168 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.111 0.889 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.152 0.848 47 H 0.164 0.836 48 H 0.174 0.826 49 H 0.158 0.842 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.018 -13.438 8.207 26.262 hybrid contribution -0.710 1.269 -0.530 1.548 sum 20.309 -12.169 7.677 24.889 Atomic orbital electron populations 1.69902 1.07708 1.27321 1.56563 1.26086 0.95913 1.01509 1.00114 0.85806 0.79137 0.79225 0.77123 1.20539 1.24976 1.16695 1.18803 0.83966 0.92750 1.41942 0.93136 1.44384 1.03811 1.33523 1.52443 1.21529 0.95695 0.91648 0.91776 1.21968 0.98263 0.99483 0.97461 1.21395 0.96812 0.96507 0.99460 1.22093 0.98892 0.98071 0.97293 1.20870 0.90995 0.88319 0.93625 0.92802 1.21079 0.92394 0.89864 0.94541 1.45931 1.11053 1.32555 1.46385 1.20902 0.88687 0.80801 0.78978 1.90723 1.17841 1.71183 1.66527 1.20201 0.99600 0.94316 0.93274 0.84265 1.22159 0.99487 0.94768 1.02085 1.23256 1.01594 0.94543 0.81600 1.85966 1.84568 1.18167 1.35673 1.18868 0.95695 0.83819 0.93581 1.20900 1.04310 0.95562 0.97120 1.21311 0.96610 0.93033 0.98977 1.21330 1.02710 1.01155 0.92505 1.21258 0.97431 0.93127 0.99890 1.19463 1.08122 0.95500 0.93679 0.93139 0.93901 0.94031 0.93395 0.90133 0.89977 0.91022 0.93491 0.88931 0.94382 0.94169 0.74602 0.92253 0.87463 0.89136 0.84761 0.83620 0.82551 0.84238 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.14 13.96 21.65 0.30 -62.83 16 2 C -0.04 -2.52 5.35 84.86 0.45 -2.07 16 3 Si 0.96 47.03 24.32 68.60 1.67 48.70 16 4 H -0.28 -12.97 6.82 99.48 0.68 -12.29 16 5 H -0.32 -16.33 7.11 99.48 0.71 -15.63 16 6 H -0.24 -10.88 5.81 99.48 0.58 -10.31 16 7 C -0.24 -13.94 8.98 84.03 0.75 -13.19 16 8 H 0.05 3.24 6.51 -2.91 -0.02 3.22 16 9 N -0.62 -27.81 2.77 -674.43 -1.86 -29.67 16 10 C 0.12 4.71 4.11 86.36 0.36 5.06 16 11 C -0.13 -4.05 6.08 30.67 0.19 -3.87 16 12 C -0.10 -2.48 5.88 30.62 0.18 -2.30 16 13 C -0.12 -3.30 5.22 30.82 0.16 -3.14 16 14 C 0.17 5.85 3.01 45.12 0.14 5.98 16 15 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 16 C 0.15 5.59 3.83 86.38 0.33 5.92 16 17 N -0.71 -19.55 4.20 -463.06 -1.94 -21.49 16 18 C 0.52 16.06 6.17 87.66 0.54 16.60 16 19 O -0.58 -24.95 15.87 -3.02 -0.05 -25.00 16 20 C -0.05 -1.14 2.70 -12.24 -0.03 -1.18 16 21 H 0.14 1.89 8.14 -2.38 -0.02 1.87 16 22 C -0.15 -2.96 5.25 30.76 0.16 -2.80 16 23 C 0.06 0.95 7.03 72.12 0.51 1.45 16 24 O -0.33 -7.16 10.27 -91.86 -0.94 -8.10 16 25 C 0.13 2.94 6.47 22.52 0.15 3.09 16 26 C -0.16 -3.27 9.94 22.42 0.22 -3.05 16 27 C -0.08 -1.50 10.04 22.22 0.22 -1.27 16 28 C -0.16 -3.31 10.04 22.25 0.22 -3.09 16 29 C -0.10 -2.33 9.10 22.30 0.20 -2.13 16 30 C -0.17 -3.95 5.43 -19.75 -0.11 -4.06 16 31 H 0.26 16.12 8.32 -92.71 -0.77 15.35 16 32 H 0.04 1.94 4.42 -2.39 -0.01 1.93 16 33 H 0.04 1.58 6.60 -2.39 -0.02 1.56 16 34 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.71 7.37 -2.39 -0.02 1.69 16 40 H 0.04 1.82 7.27 -2.38 -0.02 1.81 16 41 H 0.04 1.77 7.76 -2.39 -0.02 1.75 16 42 H 0.42 7.83 7.34 -92.71 -0.68 7.15 16 43 H 0.06 1.65 7.44 -2.39 -0.02 1.63 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.13 1.32 8.14 -2.39 -0.02 1.31 16 47 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 48 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.13 2.91 6.08 -2.91 -0.02 2.90 16 Total: -1.00 -81.45 380.48 1.93 -79.52 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.11 Total: 22.90 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 4.64 Total: -4.03 kcal Atomic # 7 Polarization: -110.49 SS G_CDS: -3.51 Total: -114.00 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.99 Total: -33.10 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.67 Total: 48.70 kcal Total: -81.45 1.93 -79.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024710548.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.420 kcal (2) G-P(sol) polarization free energy of solvation -81.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds