Wall clock time and date at job start Wed Apr 1 2020 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48505 * 109.46860 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47071 * 29.99782 * 3 2 1 6 6 H 1.48498 * 109.46911 * 149.99839 * 3 2 1 7 7 C 1.38815 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99449 * 168.46593 * 7 2 1 9 9 N 1.36933 * 120.00277 * 348.47309 * 7 2 1 10 10 C 1.46918 * 120.63260 * 323.29706 * 9 7 2 11 11 C 1.53192 * 108.77948 * 233.58746 * 10 9 7 12 12 C 1.53042 * 109.30848 * 305.36508 * 11 10 9 13 13 C 1.53034 * 109.54038 * 61.36466 * 12 11 10 14 14 C 1.46927 * 120.63005 * 143.27289 * 9 7 2 15 15 H 1.08998 * 109.58856 * 246.34256 * 14 9 7 16 16 C 1.53003 * 109.58635 * 6.62838 * 14 9 7 17 17 N 1.46500 * 109.47053 * 299.77429 * 16 14 9 18 18 C 1.34773 * 120.00283 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99781 * 5.46730 * 18 17 16 20 20 C 1.50696 * 120.00270 * 185.47003 * 18 17 16 21 21 H 1.08997 * 109.43641 * 23.02477 * 20 18 17 22 22 C 1.53073 * 109.43680 * 142.89474 * 20 18 17 23 23 C 1.53417 * 108.30043 * 168.25724 * 22 20 18 24 24 O 1.42826 * 108.37289 * 295.28680 * 23 22 20 25 25 C 1.35852 * 117.85497 * 49.20731 * 24 23 22 26 26 C 1.39147 * 118.49397 * 163.02151 * 25 24 23 27 27 C 1.37968 * 120.21494 * 179.55915 * 26 25 24 28 28 C 1.38288 * 119.95580 * 0.04019 * 27 26 25 29 29 C 1.38106 * 119.98423 * 0.06473 * 28 27 26 30 30 C 1.38367 * 121.80738 * 342.73533 * 25 24 23 31 31 H 0.97007 * 120.00059 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.58734 * 353.37347 * 10 9 7 33 33 H 1.09000 * 109.59142 * 113.65817 * 10 9 7 34 34 H 1.09008 * 109.49397 * 65.31336 * 11 10 9 35 35 H 1.08996 * 109.50221 * 185.38086 * 11 10 9 36 36 H 1.09006 * 109.45679 * 181.38355 * 12 11 10 37 37 H 1.08996 * 109.46071 * 301.34094 * 12 11 10 38 38 H 1.08994 * 109.50192 * 178.68137 * 13 12 11 39 39 H 1.09005 * 109.50157 * 58.58578 * 13 12 11 40 40 H 1.09002 * 109.46632 * 179.77791 * 16 14 9 41 41 H 1.08995 * 109.47254 * 59.77859 * 16 14 9 42 42 H 0.97004 * 119.99841 * 0.02562 * 17 16 14 43 43 H 1.08991 * 109.69872 * 287.95934 * 22 20 18 44 44 H 1.08998 * 109.69592 * 48.55599 * 22 20 18 45 45 H 1.08999 * 109.67849 * 175.56953 * 23 22 20 46 46 H 1.08995 * 109.71000 * 55.02604 * 23 22 20 47 47 H 1.08009 * 119.89403 * 359.60460 * 26 25 24 48 48 H 1.08002 * 120.01978 * 180.02562 * 27 26 25 49 49 H 1.07998 * 120.01033 * 180.08920 * 28 27 26 50 50 H 1.08005 * 119.83947 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0738 -1.2118 -0.1865 9 7 1.3461 -2.3760 0.2380 10 6 0.2450 -2.4299 1.2092 11 6 0.5323 -3.5455 2.2190 12 6 0.7735 -4.8574 1.4688 13 6 1.9917 -4.7078 0.5548 14 6 1.7209 -3.6054 -0.4739 15 1 0.9070 -3.9090 -1.1323 16 6 2.9834 -3.3544 -1.3011 17 7 2.7251 -2.2919 -2.2761 18 6 3.7003 -1.8997 -3.1196 19 8 4.7587 -2.4916 -3.1401 20 6 3.4758 -0.7257 -4.0373 21 1 2.6940 -0.0876 -3.6253 22 6 4.7730 0.0770 -4.1643 23 6 4.6095 1.0778 -5.3155 24 8 4.4625 0.3443 -6.5322 25 6 3.5567 -0.6679 -6.5577 26 6 3.1376 -1.1528 -7.7928 27 6 2.2258 -2.1860 -7.8600 28 6 1.7253 -2.7420 -6.6969 29 6 2.1374 -2.2619 -5.4693 30 6 3.0523 -1.2246 -5.3957 31 1 -0.4850 0.8401 -0.0004 32 1 0.1704 -1.4755 1.7304 33 1 -0.6907 -2.6366 0.6897 34 1 1.4185 -3.2905 2.8004 35 1 -0.3210 -3.6597 2.8876 36 1 0.9539 -5.6580 2.1862 37 1 -0.1035 -5.0989 0.8684 38 1 2.1770 -5.6496 0.0384 39 1 2.8642 -4.4420 1.1518 40 1 3.2619 -4.2687 -1.8253 41 1 3.7962 -3.0521 -0.6409 42 1 1.8522 -1.8706 -2.3145 43 1 4.9652 0.6138 -3.2354 44 1 5.6025 -0.5968 -4.3783 45 1 5.4914 1.7155 -5.3756 46 1 3.7240 1.6906 -5.1470 47 1 3.5279 -0.7193 -8.7018 48 1 1.9029 -2.5602 -8.8203 49 1 1.0126 -3.5518 -6.7485 50 1 1.7447 -2.6976 -4.5624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024710554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:28 Heat of formation + Delta-G solvation = -38.309448 kcal Electronic energy + Delta-G solvation = -31810.850183 eV Core-core repulsion = 27803.079571 eV Total energy + Delta-G solvation = -4007.770613 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.90593 -39.04104 -37.72116 -37.43715 -34.23336 -33.99506 -33.09808 -30.88831 -30.47700 -30.15565 -30.00264 -26.87221 -25.65810 -24.57212 -23.59870 -22.52536 -22.19223 -20.88031 -20.33797 -19.51379 -19.09241 -17.86514 -16.94951 -16.61136 -16.27241 -15.89899 -15.53643 -15.36504 -14.86585 -14.40256 -14.16561 -14.07868 -13.84246 -13.61415 -13.55752 -13.34760 -13.14222 -13.04249 -12.77687 -12.52140 -12.39552 -12.05166 -11.84439 -11.74570 -11.44627 -11.22951 -11.04491 -10.92486 -10.85778 -10.79506 -10.63991 -10.53904 -10.34339 -10.21437 -10.05335 -9.64499 -9.48794 -9.29525 -8.70953 -8.64307 -8.25372 -8.09683 -6.63978 -5.91956 -3.44086 1.33917 1.48089 3.10418 3.21615 3.29665 3.32756 3.35440 3.67295 3.95459 4.34396 4.63873 4.73780 4.78569 5.01055 5.10679 5.19238 5.21689 5.24791 5.29656 5.37684 5.48424 5.50084 5.52325 5.59471 5.61815 5.64562 5.74621 5.93588 5.94787 6.01458 6.05152 6.13073 6.20656 6.28900 6.31941 6.33007 6.37519 6.49287 6.56038 6.58246 6.66628 6.69110 6.80937 6.81332 6.95241 7.15765 7.30169 7.46176 7.55356 7.72073 8.23205 8.37285 8.82453 9.09388 9.69045 10.31686 11.14276 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.004103 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.681396 B = 6822.691081 C = 8013.370287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.013 3.987 3 Si 0.888 3.112 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.587 5.587 10 C 0.177 3.823 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.135 3.865 17 N -0.690 5.690 18 C 0.522 3.478 19 O -0.558 6.558 20 C -0.067 4.067 21 H 0.105 0.895 22 C -0.146 4.146 23 C 0.063 3.937 24 O -0.317 6.317 25 C 0.138 3.862 26 C -0.153 4.153 27 C -0.089 4.089 28 C -0.151 4.151 29 C -0.078 4.078 30 C -0.139 4.139 31 H 0.255 0.745 32 H 0.075 0.925 33 H 0.020 0.980 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.110 0.890 46 H 0.066 0.934 47 H 0.128 0.872 48 H 0.127 0.873 49 H 0.124 0.876 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 -3.059 -9.179 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.187 4.187 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.011 3.989 17 N -0.341 5.341 18 C 0.307 3.693 19 O -0.437 6.437 20 C -0.088 4.088 21 H 0.123 0.877 22 C -0.183 4.183 23 C -0.012 4.012 24 O -0.231 6.231 25 C 0.093 3.907 26 C -0.171 4.171 27 C -0.107 4.107 28 C -0.169 4.169 29 C -0.097 4.097 30 C -0.141 4.141 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.254 0.746 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.128 0.872 46 H 0.085 0.915 47 H 0.146 0.854 48 H 0.144 0.856 49 H 0.142 0.858 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.159 -3.248 -9.297 10.342 hybrid contribution -0.190 1.188 0.502 1.303 sum 2.969 -2.060 -8.795 9.508 Atomic orbital electron populations 1.69985 1.05173 1.25619 1.53036 1.25218 0.95178 0.98125 1.00152 0.86526 0.79568 0.84211 0.77948 1.21126 1.21489 1.20362 1.19056 0.91081 0.83624 1.44466 0.91825 1.44002 1.39304 1.04292 1.43505 1.20681 0.89364 0.96033 0.88810 1.22190 1.00141 0.96949 0.99051 1.21352 0.97824 0.97339 0.97942 1.21935 0.98395 0.98064 0.98290 1.20748 0.93582 0.88672 0.91652 0.95086 1.21280 0.98399 0.89124 0.90088 1.46087 1.15707 1.38330 1.33936 1.19980 0.84199 0.84474 0.80640 1.90627 1.26719 1.56357 1.70019 1.20178 0.99747 0.96643 0.92272 0.87663 1.22135 0.97649 0.98662 0.99892 1.23005 1.02904 0.92939 0.82335 1.85955 1.55952 1.44120 1.37073 1.18640 0.89931 0.89008 0.93128 1.20531 1.00851 1.00269 0.95496 1.20897 0.96038 0.95301 0.98484 1.20991 1.02138 1.01601 0.92172 1.21055 0.95249 0.94754 0.98595 1.19439 1.01573 1.00128 0.92926 0.93511 0.90647 0.96196 0.92835 0.93540 0.93711 0.92862 0.93046 0.92125 0.92699 0.91719 0.74641 0.89349 0.88868 0.87178 0.91537 0.85362 0.85554 0.85822 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.43 11.53 55.49 0.64 -22.79 16 2 C 0.01 0.33 5.00 -17.43 -0.09 0.25 16 3 Si 0.89 20.02 29.57 -169.99 -5.03 14.99 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.25 -6.04 6.70 -15.06 -0.10 -6.14 16 8 H 0.06 1.58 6.16 -52.49 -0.32 1.26 16 9 N -0.59 -12.94 2.94 -164.78 -0.48 -13.42 16 10 C 0.18 3.85 5.23 -3.72 -0.02 3.83 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.71 5.88 -26.69 -0.16 -1.86 16 13 C -0.13 -2.09 5.37 -26.61 -0.14 -2.23 16 14 C 0.16 3.01 3.01 -67.59 -0.20 2.81 16 15 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 16 C 0.14 2.51 4.45 -4.04 -0.02 2.49 16 17 N -0.69 -12.93 3.31 -60.30 -0.20 -13.13 16 18 C 0.52 9.84 5.74 -10.99 -0.06 9.78 16 19 O -0.56 -12.00 16.10 5.56 0.09 -11.91 16 20 C -0.07 -1.11 2.70 -92.85 -0.25 -1.36 16 21 H 0.11 1.76 8.12 -51.93 -0.42 1.34 16 22 C -0.15 -2.17 5.36 -26.48 -0.14 -2.31 16 23 C 0.06 0.79 7.03 37.37 0.26 1.06 16 24 O -0.32 -4.59 10.27 -19.28 -0.20 -4.79 16 25 C 0.14 2.08 6.47 -39.20 -0.25 1.83 16 26 C -0.15 -1.99 9.94 -39.34 -0.39 -2.38 16 27 C -0.09 -1.05 10.04 -39.66 -0.40 -1.45 16 28 C -0.15 -1.94 10.04 -39.61 -0.40 -2.33 16 29 C -0.08 -1.18 9.10 -39.53 -0.36 -1.54 16 30 C -0.14 -2.22 5.43 -104.44 -0.57 -2.78 16 31 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.08 1.86 6.57 -51.93 -0.34 1.52 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.31 7.40 -51.93 -0.38 0.93 16 42 H 0.42 8.16 7.37 -40.82 -0.30 7.86 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.09 1.51 7.47 -51.93 -0.39 1.12 16 45 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 48 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 50 H 0.13 1.92 6.86 -52.48 -0.36 1.56 16 LS Contribution 388.76 15.07 5.86 5.86 Total: -1.00 -28.14 388.76 -10.77 -38.91 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -8.00 Total: 11.38 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.45 Total: -5.10 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.04 Total: -49.34 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.11 Total: -16.70 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.14 -10.77 -38.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024710554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.596 kcal (2) G-P(sol) polarization free energy of solvation -28.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds