Wall clock time and date at job start Wed Apr 1 2020 02:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00290 * 2 1 4 4 H 1.48505 * 109.46860 * 269.99983 * 3 2 1 5 5 H 1.48501 * 109.47071 * 29.99782 * 3 2 1 6 6 H 1.48498 * 109.46911 * 149.99839 * 3 2 1 7 7 C 1.38815 * 119.99430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99449 * 168.46593 * 7 2 1 9 9 N 1.36933 * 120.00277 * 348.47309 * 7 2 1 10 10 C 1.46918 * 120.63260 * 323.29706 * 9 7 2 11 11 C 1.53192 * 108.77948 * 233.58746 * 10 9 7 12 12 C 1.53042 * 109.30848 * 305.36508 * 11 10 9 13 13 C 1.53034 * 109.54038 * 61.36466 * 12 11 10 14 14 C 1.46927 * 120.63005 * 143.27289 * 9 7 2 15 15 H 1.08998 * 109.58856 * 246.34256 * 14 9 7 16 16 C 1.53003 * 109.58635 * 6.62838 * 14 9 7 17 17 N 1.46500 * 109.47053 * 299.77429 * 16 14 9 18 18 C 1.34773 * 120.00283 * 180.02562 * 17 16 14 19 19 O 1.21283 * 119.99781 * 5.46730 * 18 17 16 20 20 C 1.50696 * 120.00270 * 185.47003 * 18 17 16 21 21 H 1.08997 * 109.43641 * 23.02477 * 20 18 17 22 22 C 1.53073 * 109.43680 * 142.89474 * 20 18 17 23 23 C 1.53417 * 108.30043 * 168.25724 * 22 20 18 24 24 O 1.42826 * 108.37289 * 295.28680 * 23 22 20 25 25 C 1.35852 * 117.85497 * 49.20731 * 24 23 22 26 26 C 1.39147 * 118.49397 * 163.02151 * 25 24 23 27 27 C 1.37968 * 120.21494 * 179.55915 * 26 25 24 28 28 C 1.38288 * 119.95580 * 0.04019 * 27 26 25 29 29 C 1.38106 * 119.98423 * 0.06473 * 28 27 26 30 30 C 1.38367 * 121.80738 * 342.73533 * 25 24 23 31 31 H 0.97007 * 120.00059 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.58734 * 353.37347 * 10 9 7 33 33 H 1.09000 * 109.59142 * 113.65817 * 10 9 7 34 34 H 1.09008 * 109.49397 * 65.31336 * 11 10 9 35 35 H 1.08996 * 109.50221 * 185.38086 * 11 10 9 36 36 H 1.09006 * 109.45679 * 181.38355 * 12 11 10 37 37 H 1.08996 * 109.46071 * 301.34094 * 12 11 10 38 38 H 1.08994 * 109.50192 * 178.68137 * 13 12 11 39 39 H 1.09005 * 109.50157 * 58.58578 * 13 12 11 40 40 H 1.09002 * 109.46632 * 179.77791 * 16 14 9 41 41 H 1.08995 * 109.47254 * 59.77859 * 16 14 9 42 42 H 0.97004 * 119.99841 * 0.02562 * 17 16 14 43 43 H 1.08991 * 109.69872 * 287.95934 * 22 20 18 44 44 H 1.08998 * 109.69592 * 48.55599 * 22 20 18 45 45 H 1.08999 * 109.67849 * 175.56953 * 23 22 20 46 46 H 1.08995 * 109.71000 * 55.02604 * 23 22 20 47 47 H 1.08009 * 119.89403 * 359.60460 * 26 25 24 48 48 H 1.08002 * 120.01978 * 180.02562 * 27 26 25 49 49 H 1.07998 * 120.01033 * 180.08920 * 28 27 26 50 50 H 1.08005 * 119.83947 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0738 -1.2118 -0.1865 9 7 1.3461 -2.3760 0.2380 10 6 0.2450 -2.4299 1.2092 11 6 0.5323 -3.5455 2.2190 12 6 0.7735 -4.8574 1.4688 13 6 1.9917 -4.7078 0.5548 14 6 1.7209 -3.6054 -0.4739 15 1 0.9070 -3.9090 -1.1323 16 6 2.9834 -3.3544 -1.3011 17 7 2.7251 -2.2919 -2.2761 18 6 3.7003 -1.8997 -3.1196 19 8 4.7587 -2.4916 -3.1401 20 6 3.4758 -0.7257 -4.0373 21 1 2.6940 -0.0876 -3.6253 22 6 4.7730 0.0770 -4.1643 23 6 4.6095 1.0778 -5.3155 24 8 4.4625 0.3443 -6.5322 25 6 3.5567 -0.6679 -6.5577 26 6 3.1376 -1.1528 -7.7928 27 6 2.2258 -2.1860 -7.8600 28 6 1.7253 -2.7420 -6.6969 29 6 2.1374 -2.2619 -5.4693 30 6 3.0523 -1.2246 -5.3957 31 1 -0.4850 0.8401 -0.0004 32 1 0.1704 -1.4755 1.7304 33 1 -0.6907 -2.6366 0.6897 34 1 1.4185 -3.2905 2.8004 35 1 -0.3210 -3.6597 2.8876 36 1 0.9539 -5.6580 2.1862 37 1 -0.1035 -5.0989 0.8684 38 1 2.1770 -5.6496 0.0384 39 1 2.8642 -4.4420 1.1518 40 1 3.2619 -4.2687 -1.8253 41 1 3.7962 -3.0521 -0.6409 42 1 1.8522 -1.8706 -2.3145 43 1 4.9652 0.6138 -3.2354 44 1 5.6025 -0.5968 -4.3783 45 1 5.4914 1.7155 -5.3756 46 1 3.7240 1.6906 -5.1470 47 1 3.5279 -0.7193 -8.7018 48 1 1.9029 -2.5602 -8.8203 49 1 1.0126 -3.5518 -6.7485 50 1 1.7447 -2.6976 -4.5624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024710554.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:27 Heat of formation + Delta-G solvation = -52.590738 kcal Electronic energy + Delta-G solvation = -31811.469467 eV Core-core repulsion = 27803.079571 eV Total energy + Delta-G solvation = -4008.389896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08321 -40.49284 -39.28093 -38.46777 -35.73666 -35.27514 -34.87837 -32.36805 -31.75195 -31.57563 -31.20838 -28.24657 -27.24504 -26.07004 -24.72750 -23.85071 -23.59643 -22.34522 -21.72796 -20.86253 -20.59069 -19.03558 -18.47448 -17.84063 -17.69994 -17.26234 -17.06186 -16.79671 -16.05375 -15.93606 -15.72161 -15.43028 -15.06317 -14.99641 -14.85699 -14.70764 -14.56792 -14.26166 -14.20654 -14.07545 -13.65059 -13.45630 -13.34400 -12.95460 -12.82450 -12.78622 -12.59633 -12.50711 -12.38604 -12.08408 -12.06275 -11.88607 -11.81637 -11.66177 -11.53521 -11.19836 -11.08249 -10.78695 -10.52844 -9.87610 -9.79633 -9.16998 -8.48562 -7.83399 -5.36970 0.28025 0.42466 1.38102 1.45514 1.50934 1.61477 2.22572 2.38174 2.48307 2.79711 3.31641 3.44058 3.56137 3.58791 3.66726 3.85186 3.98995 4.07475 4.11947 4.19343 4.20953 4.25925 4.30658 4.41968 4.48117 4.50215 4.51701 4.54676 4.61000 4.64365 4.75005 4.85577 4.86578 4.96525 4.98734 5.02875 5.12941 5.21138 5.27353 5.29505 5.37263 5.44340 5.45391 5.55206 5.59141 5.60801 5.74350 5.81240 5.82193 6.39588 6.46694 6.66676 7.19639 7.27905 7.86310 8.44094 9.19977 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011734 B = 0.004103 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.681396 B = 6822.691081 C = 8013.370287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.238 4.238 8 H 0.054 0.946 9 N -0.600 5.600 10 C 0.182 3.818 11 C -0.135 4.135 12 C -0.102 4.102 13 C -0.122 4.122 14 C 0.161 3.839 15 H 0.031 0.969 16 C 0.140 3.860 17 N -0.689 5.689 18 C 0.524 3.476 19 O -0.587 6.587 20 C -0.065 4.065 21 H 0.097 0.903 22 C -0.144 4.144 23 C 0.065 3.935 24 O -0.323 6.323 25 C 0.120 3.880 26 C -0.155 4.155 27 C -0.079 4.079 28 C -0.152 4.152 29 C -0.099 4.099 30 C -0.162 4.162 31 H 0.249 0.751 32 H 0.040 0.960 33 H 0.002 0.998 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.411 0.589 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.142 0.858 46 H 0.072 0.928 47 H 0.151 0.849 48 H 0.165 0.835 49 H 0.147 0.853 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -4.194 -10.692 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.223 4.223 3 Si 0.760 3.240 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.071 0.929 9 N -0.324 5.324 10 C 0.057 3.943 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.055 3.945 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.338 5.338 18 C 0.310 3.690 19 O -0.469 6.469 20 C -0.086 4.086 21 H 0.115 0.885 22 C -0.182 4.182 23 C -0.009 4.009 24 O -0.237 6.237 25 C 0.075 3.925 26 C -0.174 4.174 27 C -0.097 4.097 28 C -0.170 4.170 29 C -0.118 4.118 30 C -0.163 4.163 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.020 0.980 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.248 0.752 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.160 0.840 46 H 0.090 0.910 47 H 0.169 0.831 48 H 0.183 0.817 49 H 0.165 0.835 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.350 -4.400 -10.811 12.143 hybrid contribution -0.255 1.469 0.949 1.767 sum 3.095 -2.932 -9.862 10.744 Atomic orbital electron populations 1.70096 1.06115 1.25505 1.54927 1.25645 0.95603 1.00139 1.00908 0.85840 0.78181 0.81706 0.78271 1.19852 1.22371 1.20842 1.19030 0.90603 0.84498 1.42770 0.92856 1.44180 1.39102 1.04877 1.44274 1.20501 0.88686 0.95913 0.89222 1.22051 1.00534 0.96604 0.98244 1.21335 0.97630 0.96740 0.98246 1.21889 0.98410 0.98137 0.97695 1.20878 0.93350 0.88096 0.92194 0.95151 1.21247 0.97676 0.89582 0.89873 1.46107 1.15453 1.38325 1.33937 1.20377 0.83477 0.84680 0.80440 1.90598 1.27749 1.57561 1.70981 1.20149 1.00378 0.95588 0.92519 0.88544 1.22133 0.96123 0.98814 1.01172 1.23171 1.04648 0.92290 0.80815 1.85941 1.55952 1.44137 1.37660 1.18936 0.90397 0.89555 0.93652 1.20924 1.00683 1.00298 0.95476 1.21346 0.94591 0.94062 0.99684 1.21324 1.02138 1.01898 0.91656 1.21141 0.95939 0.95305 0.99389 1.19460 1.02853 1.01315 0.92680 0.94191 0.94114 0.97996 0.93557 0.91711 0.90740 0.92444 0.90139 0.92826 0.91245 0.93652 0.75202 0.89170 0.90424 0.84032 0.90955 0.83147 0.81745 0.83534 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.79 11.53 21.65 0.25 -49.54 16 2 C -0.03 -1.31 5.00 84.86 0.42 -0.88 16 3 Si 0.93 41.93 29.57 68.60 2.03 43.96 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -11.69 6.70 84.03 0.56 -11.13 16 8 H 0.05 2.73 6.16 -2.91 -0.02 2.71 16 9 N -0.60 -26.83 2.94 -675.23 -1.98 -28.82 16 10 C 0.18 8.08 5.23 86.36 0.45 8.53 16 11 C -0.14 -4.71 6.08 30.67 0.19 -4.52 16 12 C -0.10 -2.98 5.88 30.62 0.18 -2.80 16 13 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 14 C 0.16 5.98 3.01 44.98 0.14 6.11 16 15 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 16 C 0.14 5.24 4.45 86.38 0.38 5.62 16 17 N -0.69 -26.55 3.31 -463.07 -1.53 -28.08 16 18 C 0.52 20.33 5.74 87.66 0.50 20.84 16 19 O -0.59 -25.90 16.10 -3.04 -0.05 -25.95 16 20 C -0.07 -2.22 2.70 -12.24 -0.03 -2.25 16 21 H 0.10 3.36 8.12 -2.39 -0.02 3.34 16 22 C -0.14 -4.34 5.36 30.76 0.16 -4.17 16 23 C 0.07 1.57 7.03 72.12 0.51 2.08 16 24 O -0.32 -8.97 10.27 -91.89 -0.94 -9.91 16 25 C 0.12 3.50 6.47 22.52 0.15 3.65 16 26 C -0.16 -3.68 9.94 22.42 0.22 -3.45 16 27 C -0.08 -1.62 10.04 22.22 0.22 -1.40 16 28 C -0.15 -3.62 10.04 22.25 0.22 -3.40 16 29 C -0.10 -2.99 9.10 22.30 0.20 -2.79 16 30 C -0.16 -5.17 5.43 -19.75 -0.11 -5.28 16 31 H 0.25 13.29 8.31 -92.70 -0.77 12.52 16 32 H 0.04 2.07 6.57 -2.39 -0.02 2.05 16 33 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 34 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.05 1.87 7.40 -2.39 -0.02 1.85 16 42 H 0.41 16.74 7.37 -92.71 -0.68 16.06 16 43 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 44 H 0.08 2.57 7.47 -2.39 -0.02 2.55 16 45 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 48 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 49 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 50 H 0.12 3.61 6.86 -2.91 -0.02 3.59 16 Total: -1.00 -62.49 388.76 2.57 -59.92 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.25 Total: 37.25 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 4.54 Total: 1.17 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.27 Total: -106.43 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -0.99 Total: -35.86 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -62.49 2.57 -59.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024710554.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.331 kcal (2) G-P(sol) polarization free energy of solvation -62.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds