Wall clock time and date at job start Wed Apr 1 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00529 * 2 1 4 4 H 1.48499 * 109.47471 * 240.00535 * 3 2 1 5 5 H 1.48501 * 109.46811 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47251 * 120.00135 * 3 2 1 7 7 C 1.38821 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99437 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00230 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47202 * 204.99989 * 10 9 7 12 12 C 1.53003 * 109.47208 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47272 * 59.99366 * 12 11 10 14 14 N 1.46506 * 109.46813 * 60.00714 * 13 12 11 15 15 C 1.34774 * 119.99459 * 155.00053 * 14 13 12 16 16 O 1.21279 * 120.00585 * 5.04870 * 15 14 13 17 17 C 1.50707 * 119.99471 * 185.04820 * 15 14 13 18 18 H 1.08998 * 109.34063 * 231.13715 * 17 15 14 19 19 O 1.42727 * 109.20752 * 350.73532 * 17 15 14 20 20 C 1.43079 * 113.10755 * 171.92578 * 19 17 15 21 21 C 1.52970 * 108.55426 * 289.31047 * 20 19 17 22 22 C 1.50743 * 109.71588 * 49.22829 * 21 20 19 23 23 C 1.38594 * 118.76956 * 163.02530 * 22 21 20 24 24 C 1.38065 * 120.28162 * 179.80967 * 23 22 21 25 25 C 1.38273 * 119.85734 * 359.97094 * 24 23 22 26 26 C 1.38046 * 119.89543 * 0.08942 * 25 24 23 27 27 C 1.37909 * 121.34916 * 342.97102 * 22 21 20 28 28 C 1.52997 * 109.47278 * 300.00142 * 13 12 11 29 29 C 1.52998 * 109.47264 * 84.99363 * 10 9 7 30 30 H 0.97004 * 119.99392 * 359.97438 * 1 2 3 31 31 H 0.97008 * 120.00100 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.46923 * 324.99371 * 10 9 7 33 33 H 1.09000 * 109.47911 * 59.99401 * 11 10 9 34 34 H 1.09003 * 109.47082 * 299.99180 * 11 10 9 35 35 H 1.09002 * 109.46910 * 299.99377 * 12 11 10 36 36 H 1.09004 * 109.47066 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.46786 * 180.02562 * 13 12 11 38 38 H 0.97002 * 119.99599 * 334.99226 * 14 13 12 39 39 H 1.09004 * 109.56028 * 169.61816 * 20 19 17 40 40 H 1.09000 * 109.63992 * 49.05708 * 20 19 17 41 41 H 1.08996 * 109.42491 * 289.15996 * 21 20 19 42 42 H 1.09005 * 109.41856 * 169.28686 * 21 20 19 43 43 H 1.08008 * 119.86066 * 359.83062 * 23 22 21 44 44 H 1.07998 * 120.07220 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.04953 * 180.11174 * 25 24 23 46 46 H 1.08003 * 119.84704 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.46840 * 179.97438 * 28 13 12 48 48 H 1.09002 * 109.47043 * 300.00074 * 28 13 12 49 49 H 1.08991 * 109.47254 * 299.99913 * 29 10 9 50 50 H 1.09003 * 109.47230 * 60.00691 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.1806 -4.7521 -0.6101 12 6 1.9453 -6.0774 -0.6096 13 6 2.3087 -6.4559 0.8276 14 7 1.0844 -6.5983 1.6196 15 6 1.0783 -7.3829 2.7154 16 8 2.1073 -7.8978 3.0984 17 6 -0.2075 -7.6203 3.4648 18 1 -0.0519 -7.4129 4.5235 19 8 -1.2158 -6.7478 2.9555 20 6 -2.5175 -7.0277 3.4794 21 6 -3.0073 -8.3495 2.8854 22 6 -1.9357 -9.3999 3.0294 23 6 -2.2858 -10.7335 2.8895 24 6 -1.3286 -11.7210 3.0114 25 6 -0.0150 -11.3779 3.2735 26 6 0.3342 -10.0498 3.4141 27 6 -0.6263 -9.0574 3.2942 28 6 3.1861 -5.3606 1.4371 29 6 2.4218 -4.0356 1.4364 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3881 0.0002 32 1 2.9685 -3.5507 -0.5901 33 1 0.9212 -4.4823 -1.6339 34 1 0.2699 -4.8584 -0.0206 35 1 2.8561 -5.9715 -1.1988 36 1 1.3204 -6.8576 -1.0443 37 1 2.8539 -7.3998 0.8279 38 1 0.2784 -6.1277 1.3552 39 1 -3.2023 -6.2259 3.2030 40 1 -2.4654 -7.1109 4.5650 41 1 -3.2377 -8.2091 1.8294 42 1 -3.9051 -8.6730 3.4123 43 1 -3.3117 -11.0015 2.6840 44 1 -1.6053 -12.7593 2.9022 45 1 0.7365 -12.1478 3.3676 46 1 1.3606 -9.7827 3.6184 47 1 3.4446 -5.6301 2.4612 48 1 4.0969 -5.2547 0.8479 49 1 3.0469 -3.2554 1.8706 50 1 1.5112 -4.1419 2.0260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026538964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:31 Heat of formation + Delta-G solvation = -55.582903 kcal Electronic energy + Delta-G solvation = -30929.590831 eV Core-core repulsion = 26921.071185 eV Total energy + Delta-G solvation = -4008.519646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06288 -39.60941 -37.94934 -37.73038 -34.61570 -33.40650 -32.61145 -32.01002 -30.70555 -30.38115 -29.69096 -27.69080 -26.35878 -24.19107 -23.62706 -22.78821 -22.17525 -21.29777 -20.76351 -20.29545 -18.81089 -17.81666 -17.48723 -17.04212 -16.46646 -15.87633 -15.74332 -15.30247 -15.22957 -14.95900 -14.61211 -14.34739 -14.02191 -13.87632 -13.57310 -13.48765 -13.37556 -13.13105 -12.86479 -12.70932 -12.33166 -12.25575 -12.13850 -12.07102 -11.80726 -11.58871 -11.47432 -10.98537 -10.95396 -10.83163 -10.73832 -10.35683 -10.16479 -10.09507 -10.02824 -9.89832 -9.65159 -9.52630 -9.01245 -8.89092 -8.87431 -8.76222 -6.90578 -5.72899 -3.00730 0.99204 1.12619 2.54550 3.17700 3.32918 3.46107 3.50553 3.51324 3.52497 4.31017 4.33334 4.52110 4.61651 4.71423 4.80514 4.84404 4.95473 4.97799 5.06756 5.13110 5.15723 5.19369 5.21626 5.41276 5.48403 5.55130 5.57650 5.61803 5.71714 5.74820 5.80793 5.84120 5.93162 5.98194 6.07718 6.14339 6.17063 6.26560 6.28016 6.32295 6.41675 6.56397 6.58124 6.63909 6.72917 6.74015 6.81848 7.04307 7.20222 7.63923 7.73539 8.23517 8.46261 9.57083 10.16176 10.50738 11.49881 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.002639 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.178690 B =10606.256839 C =11435.778577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.179 3.821 11 C -0.125 4.125 12 C -0.122 4.122 13 C 0.146 3.854 14 N -0.697 5.697 15 C 0.534 3.466 16 O -0.541 6.541 17 C 0.116 3.884 18 H 0.103 0.897 19 O -0.366 6.366 20 C 0.061 3.939 21 C -0.118 4.118 22 C -0.066 4.066 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.125 4.125 26 C -0.101 4.101 27 C -0.114 4.114 28 C -0.128 4.128 29 C -0.133 4.133 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.411 0.589 39 H 0.108 0.892 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.145 0.855 47 H 0.059 0.941 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 -23.871 6.047 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.164 4.164 12 C -0.160 4.160 13 C 0.042 3.958 14 N -0.349 5.349 15 C 0.319 3.681 16 O -0.420 6.420 17 C 0.054 3.946 18 H 0.120 0.880 19 O -0.284 6.284 20 C -0.016 4.016 21 C -0.155 4.155 22 C -0.066 4.066 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.144 4.144 26 C -0.119 4.119 27 C -0.115 4.115 28 C -0.167 4.167 29 C -0.173 4.173 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.162 0.838 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.078 0.922 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.479 -23.906 6.121 25.080 hybrid contribution -0.367 0.913 0.177 1.000 sum -4.846 -22.993 6.299 24.328 Atomic orbital electron populations 1.69651 1.05060 1.25622 1.57954 1.24722 0.95498 0.97591 1.03259 0.86297 0.78529 0.83735 0.77812 1.21340 1.21762 1.21357 1.19199 0.90926 0.84204 1.42329 0.91340 1.42414 1.05724 0.99790 1.88572 1.20213 0.94232 0.85845 0.92834 1.21815 0.98772 0.94189 1.01584 1.21792 1.01452 0.97935 0.94852 1.21027 0.85344 0.99004 0.90421 1.46111 1.15176 1.47036 1.26607 1.19827 0.88635 0.78663 0.80986 1.90669 1.32493 1.51372 1.67459 1.21052 0.87143 0.87397 0.98959 0.87994 1.88037 1.16858 1.54603 1.68944 1.22680 0.84035 0.96977 0.97887 1.21186 0.96962 0.94047 1.03275 1.19481 0.93466 0.94634 0.98988 1.21022 0.99673 0.91958 1.01588 1.21171 0.93352 0.99277 0.99245 1.21140 0.96388 0.96201 1.00622 1.21547 1.00558 0.92347 0.97453 1.19703 0.93824 0.94529 1.03453 1.21915 0.98304 0.95671 1.00823 1.22209 0.99717 0.94756 1.00625 0.93568 0.78375 0.93647 0.91517 0.92433 0.90399 0.91874 0.90137 0.75060 0.87356 0.92245 0.89251 0.89444 0.85890 0.85970 0.85834 0.83759 0.92188 0.91484 0.92216 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -18.00 5.12 -53.43 -0.27 -18.28 16 10 C 0.18 3.48 2.77 -67.94 -0.19 3.29 16 11 C -0.13 -1.98 5.22 -26.73 -0.14 -2.12 16 12 C -0.12 -1.57 5.61 -26.73 -0.15 -1.72 16 13 C 0.15 2.00 2.74 -67.93 -0.19 1.82 16 14 N -0.70 -9.62 4.18 -53.80 -0.22 -9.85 16 15 C 0.53 7.59 6.82 -10.98 -0.07 7.51 16 16 O -0.54 -8.76 14.48 5.56 0.08 -8.68 16 17 C 0.12 1.40 3.22 -29.05 -0.09 1.30 16 18 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 19 O -0.37 -4.29 9.16 -35.23 -0.32 -4.61 16 20 C 0.06 0.52 6.84 37.14 0.25 0.77 16 21 C -0.12 -0.92 6.01 -27.88 -0.17 -1.09 16 22 C -0.07 -0.65 5.78 -104.59 -0.60 -1.25 16 23 C -0.12 -1.08 9.67 -39.51 -0.38 -1.47 16 24 C -0.11 -0.96 10.05 -39.63 -0.40 -1.36 16 25 C -0.13 -1.21 10.05 -39.64 -0.40 -1.61 16 26 C -0.10 -1.17 9.07 -39.50 -0.36 -1.53 16 27 C -0.11 -1.31 5.45 -104.62 -0.57 -1.88 16 28 C -0.13 -1.95 5.60 -26.76 -0.15 -2.10 16 29 C -0.13 -2.42 5.34 -26.76 -0.14 -2.57 16 30 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 32 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.91 6.50 -51.93 -0.34 0.57 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.11 7.66 -51.93 -0.40 0.71 16 38 H 0.41 5.66 5.67 -40.82 -0.23 5.43 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.46 8.07 -51.93 -0.42 0.04 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.14 1.82 5.85 -52.48 -0.31 1.51 16 47 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.05 1.06 7.60 -51.93 -0.39 0.66 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -32.07 391.46 -11.00 -43.07 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -7.87 Total: 13.61 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -4.00 Total: -11.20 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.23 Total: -55.60 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.24 Total: -13.29 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.07 -11.00 -43.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026538964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.513 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds