Wall clock time and date at job start Wed Apr 1 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86792 * 120.00326 * 2 1 4 4 H 1.48496 * 109.47434 * 239.99791 * 3 2 1 5 5 H 1.48501 * 109.47265 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47090 * 119.99558 * 3 2 1 7 7 C 1.38813 * 119.99632 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00014 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99810 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99641 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46810 * 85.00307 * 10 9 7 12 12 C 1.53005 * 109.46871 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.46800 * 299.99566 * 12 11 10 14 14 N 1.46505 * 109.46840 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99793 * 155.00155 * 14 13 12 16 16 O 1.21278 * 119.99994 * 354.85993 * 15 14 13 17 17 C 1.50697 * 119.99803 * 174.86268 * 15 14 13 18 18 H 1.09001 * 109.34188 * 128.40281 * 17 15 14 19 19 O 1.42724 * 109.34113 * 8.72440 * 17 15 14 20 20 C 1.43225 * 113.11594 * 187.98803 * 19 17 15 21 21 C 1.52966 * 108.47190 * 70.72536 * 20 19 17 22 22 C 1.50748 * 109.76568 * 310.83568 * 21 20 19 23 23 C 1.38601 * 118.76562 * 196.78039 * 22 21 20 24 24 C 1.38067 * 120.27866 * 180.19414 * 23 22 21 25 25 C 1.38260 * 119.86398 * 359.97438 * 24 23 22 26 26 C 1.38052 * 119.89256 * 359.92806 * 25 24 23 27 27 C 1.37904 * 121.35591 * 16.84285 * 22 21 20 28 28 C 1.53001 * 109.47055 * 60.00546 * 13 12 11 29 29 C 1.52998 * 109.47087 * 205.00092 * 10 9 7 30 30 H 0.97008 * 119.99819 * 359.97438 * 1 2 3 31 31 H 0.96997 * 120.00503 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.47413 * 325.00538 * 10 9 7 33 33 H 1.08998 * 109.47441 * 59.99935 * 11 10 9 34 34 H 1.08997 * 109.47213 * 299.99478 * 11 10 9 35 35 H 1.09005 * 109.46899 * 179.97438 * 12 11 10 36 36 H 1.08998 * 109.47150 * 59.99746 * 12 11 10 37 37 H 1.08998 * 109.47416 * 300.00017 * 13 12 11 38 38 H 0.96997 * 119.99857 * 335.00487 * 14 13 12 39 39 H 1.08999 * 109.63637 * 190.42640 * 20 19 17 40 40 H 1.09000 * 109.63062 * 311.02678 * 20 19 17 41 41 H 1.08997 * 109.42501 * 70.93110 * 21 20 19 42 42 H 1.09001 * 109.42063 * 190.80841 * 21 20 19 43 43 H 1.08002 * 119.86250 * 0.17065 * 23 22 21 44 44 H 1.07996 * 120.06732 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.05799 * 179.90570 * 25 24 23 46 46 H 1.08000 * 119.85091 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.47441 * 59.99486 * 28 13 12 48 48 H 1.08997 * 109.47213 * 179.97438 * 28 13 12 49 49 H 1.08995 * 109.47277 * 60.00268 * 29 10 9 50 50 H 1.09007 * 109.47190 * 300.00184 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 2.4216 -4.0357 1.4376 12 6 3.1871 -5.3604 1.4376 13 6 2.3104 -6.4560 0.8277 14 7 3.0436 -7.7244 0.8271 15 6 2.3703 -8.8920 0.8268 16 8 1.1612 -8.8947 0.9212 17 6 3.1200 -10.1939 0.7094 18 1 2.8102 -10.8626 1.5125 19 8 4.5211 -9.9440 0.8164 20 6 5.3212 -11.0981 0.5350 21 6 5.2337 -11.3950 -0.9630 22 6 3.7906 -11.3978 -1.3988 23 6 3.4613 -11.9814 -2.6120 24 6 2.1499 -11.9980 -3.0434 25 6 1.1608 -11.4304 -2.2616 26 6 1.4876 -10.8507 -1.0521 27 6 2.8041 -10.8336 -0.6176 28 6 1.9466 -6.0772 -0.6093 29 6 1.1806 -4.7522 -0.6091 30 1 -0.4850 0.8401 0.0004 31 1 0.3554 -2.3881 -0.0002 32 1 2.9686 -3.5507 -0.5888 33 1 1.5109 -4.1419 2.0270 34 1 3.0466 -3.2554 1.8719 35 1 3.4467 -5.6301 2.4613 36 1 4.0979 -5.2538 0.8482 37 1 1.3996 -6.5627 1.4170 38 1 4.0136 -7.7238 0.8270 39 1 6.3575 -10.9011 0.8095 40 1 4.9453 -11.9510 1.1001 41 1 5.7780 -10.6299 -1.5166 42 1 5.6744 -12.3712 -1.1654 43 1 4.2339 -12.4248 -3.2227 44 1 1.8971 -12.4540 -3.9891 45 1 0.1341 -11.4403 -2.5967 46 1 0.7144 -10.4079 -0.4418 47 1 2.8573 -5.9706 -1.1986 48 1 1.3223 -6.8579 -1.0439 49 1 0.9214 -4.4823 -1.6328 50 1 0.2698 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026538965.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:33 Heat of formation + Delta-G solvation = -78.694425 kcal Electronic energy + Delta-G solvation = -30303.722922 eV Core-core repulsion = 26294.201085 eV Total energy + Delta-G solvation = -4009.521837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93227 -40.53197 -39.21448 -38.57207 -36.39545 -34.65523 -34.02913 -32.81968 -32.37855 -31.71720 -30.53486 -29.00371 -27.22360 -25.54539 -24.80683 -23.65437 -23.56579 -22.54981 -21.61712 -21.08945 -20.79390 -19.13243 -18.58790 -18.33280 -17.58052 -16.96358 -16.72897 -16.54700 -16.35760 -16.02336 -15.78112 -15.41727 -15.33501 -15.18801 -14.71317 -14.64614 -14.43793 -14.37032 -14.01861 -13.74197 -13.60134 -13.43780 -13.18852 -13.10066 -12.89992 -12.77345 -12.75621 -12.46257 -12.27613 -12.19130 -12.05918 -12.01791 -11.72659 -11.62401 -11.59096 -11.17264 -10.92906 -10.84471 -10.77349 -10.05611 -9.76505 -9.60508 -8.98854 -7.91870 -5.20497 0.24749 0.39501 1.43577 1.47624 1.50927 1.56844 2.08882 2.47171 2.57993 2.77729 3.40749 3.48398 3.62037 3.72586 3.78460 3.86486 3.89823 3.93372 4.08443 4.18310 4.23698 4.24906 4.34332 4.36812 4.38573 4.49752 4.55805 4.57447 4.59566 4.65305 4.71806 4.84895 4.86796 4.96812 4.97852 5.04115 5.08538 5.10391 5.17519 5.21210 5.27964 5.44898 5.46417 5.52201 5.54151 5.54275 5.58232 5.64163 5.85812 6.02631 6.30174 6.53223 7.14689 7.35468 8.12601 8.35696 9.31851 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002197 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.902032 B =12740.881724 C =13196.632975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.236 4.236 8 H 0.078 0.922 9 N -0.740 5.740 10 C 0.174 3.826 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.150 3.850 14 N -0.697 5.697 15 C 0.529 3.471 16 O -0.569 6.569 17 C 0.128 3.872 18 H 0.108 0.892 19 O -0.378 6.378 20 C 0.054 3.946 21 C -0.114 4.114 22 C -0.073 4.073 23 C -0.126 4.126 24 C -0.113 4.113 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.107 4.107 29 C -0.111 4.111 30 H 0.250 0.750 31 H 0.370 0.630 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.418 0.582 39 H 0.132 0.868 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.151 0.849 44 H 0.147 0.853 45 H 0.132 0.868 46 H 0.122 0.878 47 H 0.075 0.925 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.064 -31.347 -2.109 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.379 5.379 10 C 0.066 3.934 11 C -0.163 4.163 12 C -0.146 4.146 13 C 0.045 3.955 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.449 6.449 17 C 0.067 3.933 18 H 0.126 0.874 19 O -0.297 6.297 20 C -0.021 4.021 21 C -0.151 4.151 22 C -0.073 4.073 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.156 4.156 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.147 4.147 29 C -0.150 4.150 30 H 0.058 0.942 31 H 0.201 0.799 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.256 0.744 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.169 0.831 44 H 0.165 0.835 45 H 0.150 0.850 46 H 0.140 0.860 47 H 0.093 0.907 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.469 -31.025 -2.010 33.882 hybrid contribution -0.519 1.073 -0.046 1.192 sum 12.950 -29.952 -2.056 32.696 Atomic orbital electron populations 1.69830 1.06703 1.25982 1.59889 1.25581 0.96358 1.01158 1.04122 0.85216 0.77156 0.79216 0.78230 1.20334 1.22446 1.20314 1.19612 0.91459 0.85176 1.40542 0.90438 1.42676 1.05406 1.01146 1.88687 1.20461 0.94161 0.84617 0.94211 1.22006 0.99425 0.96071 0.98807 1.21662 0.98431 0.92690 1.01769 1.20913 0.95648 0.82634 0.96302 1.45957 1.11426 1.04520 1.72835 1.20369 0.87302 0.85706 0.75177 1.90694 1.15112 1.87376 1.51690 1.20800 0.83057 0.93386 0.96049 0.87449 1.87973 1.14191 1.36937 1.90590 1.22989 0.96902 0.87822 0.94392 1.21244 0.91417 1.04939 0.97500 1.19819 0.95824 0.97048 0.94600 1.21412 0.97244 0.99993 0.95735 1.21517 0.93015 0.98331 1.00208 1.21360 1.00734 0.98862 0.94595 1.21512 0.96436 0.98783 0.97463 1.19750 0.94410 1.02490 0.96753 1.21712 1.00447 0.95786 0.96706 1.21634 0.98516 0.94332 1.00557 0.94170 0.79862 0.93539 0.93739 0.92849 0.90233 0.89903 0.91350 0.74369 0.85060 0.91426 0.88928 0.86928 0.83108 0.83533 0.84992 0.86018 0.90677 0.92813 0.92557 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.66 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -38.23 5.12 -322.93 -1.65 -39.89 16 10 C 0.17 6.92 2.77 44.99 0.12 7.05 16 11 C -0.12 -4.28 5.50 30.60 0.17 -4.11 16 12 C -0.11 -2.74 5.39 30.60 0.16 -2.58 16 13 C 0.15 4.05 2.50 44.99 0.11 4.16 16 14 N -0.70 -16.02 5.03 -442.52 -2.22 -18.25 16 15 C 0.53 13.52 6.84 87.66 0.60 14.12 16 16 O -0.57 -18.58 14.40 -3.02 -0.04 -18.62 16 17 C 0.13 2.50 3.22 29.09 0.09 2.60 16 18 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 19 O -0.38 -5.79 9.17 -148.98 -1.37 -7.15 16 20 C 0.05 0.47 6.85 71.97 0.49 0.96 16 21 C -0.11 -0.99 6.00 29.85 0.18 -0.81 16 22 C -0.07 -1.12 5.78 -19.84 -0.11 -1.24 16 23 C -0.13 -1.71 9.67 22.32 0.22 -1.49 16 24 C -0.11 -1.69 10.05 22.23 0.22 -1.47 16 25 C -0.14 -2.64 10.05 22.23 0.22 -2.42 16 26 C -0.12 -2.87 9.06 22.32 0.20 -2.66 16 27 C -0.13 -2.69 5.46 -19.86 -0.11 -2.80 16 28 C -0.11 -3.13 5.50 30.61 0.17 -2.96 16 29 C -0.11 -3.94 5.39 30.61 0.17 -3.78 16 30 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 31 H 0.37 20.80 7.80 -92.71 -0.72 20.08 16 32 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.07 2.18 7.51 -2.39 -0.02 2.16 16 38 H 0.42 7.78 7.41 -92.71 -0.69 7.09 16 39 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.07 0.49 8.07 -2.39 -0.02 0.47 16 41 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.12 3.32 5.83 -2.91 -0.02 3.30 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -72.10 395.82 0.77 -71.33 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: -0.46 Total: 38.61 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.21 Total: -14.07 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -3.60 Total: -118.80 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -1.41 Total: -25.77 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -72.10 0.77 -71.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026538965.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.365 kcal (2) G-P(sol) polarization free energy of solvation -72.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds