Wall clock time and date at job start Wed Apr 1 2020 02:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00629 * 2 1 4 4 H 1.48499 * 109.47037 * 270.00341 * 3 2 1 5 5 H 1.48504 * 109.47021 * 29.99837 * 3 2 1 6 6 H 1.48498 * 109.47454 * 149.99903 * 3 2 1 7 7 C 1.38817 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99854 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00212 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47030 * 204.99599 * 10 9 7 12 12 C 1.53003 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46935 * 60.00107 * 12 11 10 14 14 N 1.46496 * 109.47115 * 59.99846 * 13 12 11 15 15 C 1.34774 * 119.99915 * 155.00056 * 14 13 12 16 16 O 1.21279 * 120.00352 * 5.05686 * 15 14 13 17 17 C 1.50708 * 119.99871 * 185.05936 * 15 14 13 18 18 H 1.08992 * 109.43673 * 337.58800 * 17 15 14 19 19 C 1.53071 * 109.43727 * 97.50885 * 17 15 14 20 20 C 1.53399 * 108.30433 * 168.25651 * 19 17 15 21 21 O 1.42829 * 108.37539 * 295.29060 * 20 19 17 22 22 C 1.35843 * 117.86029 * 49.20123 * 21 20 19 23 23 C 1.39144 * 118.49774 * 163.03047 * 22 21 20 24 24 C 1.37964 * 120.21452 * 179.55560 * 23 22 21 25 25 C 1.38291 * 119.95568 * 0.03556 * 24 23 22 26 26 C 1.38103 * 119.98817 * 0.06765 * 25 24 23 27 27 C 1.38373 * 121.80248 * 342.73747 * 22 21 20 28 28 C 1.53001 * 109.47195 * 299.99766 * 13 12 11 29 29 C 1.53003 * 109.46988 * 60.00266 * 28 13 12 30 30 H 0.97003 * 119.99456 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46683 * 324.99700 * 10 9 7 33 33 H 1.08994 * 109.47109 * 59.99662 * 11 10 9 34 34 H 1.09004 * 109.46948 * 299.99601 * 11 10 9 35 35 H 1.08993 * 109.47178 * 300.00469 * 12 11 10 36 36 H 1.08992 * 109.46806 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.46973 * 180.02562 * 13 12 11 38 38 H 0.96999 * 120.00453 * 334.99659 * 14 13 12 39 39 H 1.09004 * 109.69295 * 287.96251 * 19 17 15 40 40 H 1.09003 * 109.69621 * 48.55014 * 19 17 15 41 41 H 1.09006 * 109.68191 * 55.00679 * 20 19 17 42 42 H 1.08996 * 109.68716 * 175.56578 * 20 19 17 43 43 H 1.08000 * 119.89268 * 359.59556 * 23 22 21 44 44 H 1.08001 * 120.01973 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00174 * 180.02562 * 25 24 23 46 46 H 1.08003 * 119.84166 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.46986 * 179.97438 * 28 13 12 48 48 H 1.08995 * 109.47016 * 300.00563 * 28 13 12 49 49 H 1.09003 * 109.47190 * 180.02562 * 29 28 13 50 50 H 1.08991 * 109.47424 * 60.00019 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1119 -2.4711 -0.0011 11 6 5.4990 -2.2599 0.6092 12 6 6.2636 -3.5851 0.6086 13 6 6.4102 -4.0887 -0.8288 14 7 7.1464 -3.0997 -1.6200 15 6 7.8293 -3.4864 -2.7156 16 8 7.7604 -4.6349 -3.0992 17 6 8.6788 -2.4917 -3.4642 18 1 8.3291 -1.4820 -3.2494 19 6 10.1370 -2.6311 -3.0202 20 6 11.0148 -1.8313 -3.9912 21 8 10.9218 -2.4338 -5.2829 22 6 9.6828 -2.7074 -5.7680 23 6 9.5423 -2.9511 -7.1307 24 6 8.3017 -3.2416 -7.6598 25 6 7.1932 -3.2905 -6.8344 26 6 7.3286 -3.0471 -5.4817 27 6 8.5715 -2.7545 -4.9450 28 6 5.0232 -4.2999 -1.4391 29 6 4.2585 -2.9747 -1.4385 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3624 0.0004 32 1 3.5642 -3.2073 0.5874 33 1 5.3945 -1.9015 1.6332 34 1 6.0466 -1.5237 0.0206 35 1 5.7159 -4.3209 1.1972 36 1 7.2519 -3.4345 1.0429 37 1 6.9546 -5.0330 -0.8292 38 1 7.1423 -2.1665 -1.3555 39 1 10.2528 -2.2372 -2.0105 40 1 10.4286 -3.6812 -3.0411 41 1 10.6628 -0.8008 -4.0406 42 1 12.0501 -1.8502 -3.6510 43 1 10.4074 -2.9133 -7.7763 44 1 8.1964 -3.4307 -8.7179 45 1 6.2218 -3.5182 -7.2477 46 1 6.4612 -3.0854 -4.8393 47 1 5.1276 -4.6582 -2.4632 48 1 4.4754 -5.0357 -0.8504 49 1 3.2702 -3.1253 -1.8729 50 1 4.8062 -2.2389 -2.0272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026577455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:30 Heat of formation + Delta-G solvation = -48.256543 kcal Electronic energy + Delta-G solvation = -30868.430228 eV Core-core repulsion = 26860.228276 eV Total energy + Delta-G solvation = -4008.201951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.32427 -39.90975 -38.10334 -37.67024 -34.86307 -34.49223 -32.73776 -31.05840 -30.90213 -30.57047 -30.37495 -28.27438 -26.50632 -24.10304 -23.49359 -22.88110 -22.37419 -21.47126 -20.85741 -20.09643 -19.09512 -18.17705 -17.58770 -17.43647 -16.90054 -16.22581 -15.69042 -15.49805 -15.22799 -14.93048 -14.52507 -14.33807 -14.24098 -14.02170 -13.74465 -13.60614 -13.57861 -13.33891 -12.95837 -12.69724 -12.64694 -12.35843 -12.22349 -11.98613 -11.87840 -11.77891 -11.42467 -11.28316 -11.15672 -11.00584 -10.95521 -10.87324 -10.51234 -10.28510 -10.10307 -9.84365 -9.78763 -9.60693 -9.04506 -8.97305 -8.89286 -8.35488 -7.29651 -5.79718 -3.15229 1.12092 1.28150 2.49531 2.95514 3.10214 3.32783 3.35225 3.41706 3.61937 4.13956 4.28382 4.38186 4.55490 4.56855 4.75316 4.78065 4.90497 4.91873 4.93229 4.96718 5.00661 5.10436 5.15261 5.27549 5.31829 5.40637 5.45642 5.49435 5.56919 5.59074 5.61409 5.74481 5.76834 5.82641 5.88508 5.93199 6.09031 6.11333 6.21611 6.27347 6.33749 6.37262 6.39644 6.49964 6.58317 6.64565 6.85209 6.99408 7.19619 7.44291 7.96999 8.14896 8.39516 9.17986 9.90487 10.10062 11.38802 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.002878 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.868543 B = 9728.102455 C =10317.080049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.182 3.818 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.148 3.852 14 N -0.717 5.717 15 C 0.522 3.478 16 O -0.529 6.529 17 C -0.065 4.065 18 H 0.100 0.900 19 C -0.148 4.148 20 C 0.065 3.935 21 O -0.316 6.316 22 C 0.136 3.864 23 C -0.153 4.153 24 C -0.084 4.084 25 C -0.151 4.151 26 C -0.062 4.062 27 C -0.143 4.143 28 C -0.129 4.129 29 C -0.132 4.132 30 H 0.259 0.741 31 H 0.359 0.641 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.400 0.600 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.065 0.935 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.808 -5.414 -8.056 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.391 5.391 10 C 0.073 3.927 11 C -0.166 4.166 12 C -0.160 4.160 13 C 0.044 3.956 14 N -0.369 5.369 15 C 0.307 3.693 16 O -0.405 6.405 17 C -0.086 4.086 18 H 0.118 0.882 19 C -0.186 4.186 20 C -0.010 4.010 21 O -0.231 6.231 22 C 0.092 3.908 23 C -0.172 4.172 24 C -0.103 4.103 25 C -0.169 4.169 26 C -0.080 4.080 27 C -0.144 4.144 28 C -0.168 4.168 29 C -0.172 4.172 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 23.678 -6.345 -8.364 25.901 hybrid contribution 0.217 1.816 0.326 1.858 sum 23.895 -4.530 -8.038 25.615 Atomic orbital electron populations 1.69702 1.05115 1.25788 1.57610 1.24680 0.95220 0.97178 1.02154 0.86550 0.79157 0.85100 0.77684 1.21185 1.21790 1.20410 1.19077 0.80625 0.94657 1.42816 0.89242 1.42784 1.03996 1.01992 1.90348 1.20203 0.90093 0.89115 0.93290 1.21854 0.97053 0.96159 1.01562 1.21787 1.00546 0.98603 0.95061 1.20996 0.92716 0.91713 0.90184 1.46208 1.50851 1.12211 1.27645 1.20174 0.79635 0.88957 0.80546 1.90719 1.63813 1.19777 1.66213 1.20162 0.96380 0.99935 0.92113 0.88172 1.22176 0.92791 1.03127 1.00458 1.22960 1.01522 0.95872 0.80691 1.85986 1.25560 1.76801 1.34708 1.18600 0.83284 0.96630 0.92325 1.20535 0.98501 1.06159 0.92013 1.20942 0.91770 0.97723 0.99820 1.21035 0.99122 1.03174 0.93542 1.20912 0.96087 0.95604 0.95409 1.19233 0.93866 1.07967 0.93325 1.21918 0.94771 0.99008 1.01074 1.22173 0.99894 0.95063 1.00077 0.93074 0.80842 0.92662 0.91375 0.92853 0.90142 0.91758 0.89977 0.76436 0.89070 0.89507 0.91426 0.87037 0.85271 0.85392 0.85697 0.86003 0.92048 0.91246 0.91635 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.06 13.97 55.49 0.78 -28.28 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 9 N -0.75 -16.80 4.93 -53.42 -0.26 -17.07 16 10 C 0.18 3.21 2.77 -67.93 -0.19 3.02 16 11 C -0.13 -1.71 5.22 -26.73 -0.14 -1.85 16 12 C -0.12 -1.31 5.61 -26.73 -0.15 -1.46 16 13 C 0.15 1.74 2.74 -67.93 -0.19 1.56 16 14 N -0.72 -7.85 4.23 -53.80 -0.23 -8.08 16 15 C 0.52 6.40 5.68 -10.98 -0.06 6.34 16 16 O -0.53 -8.45 15.64 5.56 0.09 -8.36 16 17 C -0.06 -0.65 2.72 -92.85 -0.25 -0.91 16 18 H 0.10 0.84 8.06 -51.93 -0.42 0.42 16 19 C -0.15 -1.19 5.49 -26.49 -0.15 -1.33 16 20 C 0.06 0.47 7.03 37.36 0.26 0.73 16 21 O -0.32 -3.38 10.27 -19.25 -0.20 -3.58 16 22 C 0.14 1.61 6.47 -39.20 -0.25 1.35 16 23 C -0.15 -1.64 9.94 -39.35 -0.39 -2.03 16 24 C -0.08 -0.85 10.04 -39.66 -0.40 -1.24 16 25 C -0.15 -1.69 10.04 -39.61 -0.40 -2.09 16 26 C -0.06 -0.78 8.63 -39.53 -0.34 -1.12 16 27 C -0.14 -1.72 5.12 -104.44 -0.53 -2.26 16 28 C -0.13 -1.77 5.60 -26.73 -0.15 -1.92 16 29 C -0.13 -2.17 5.35 -26.73 -0.14 -2.31 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.36 7.89 5.66 -40.82 -0.23 7.66 16 32 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.01 7.66 -51.93 -0.40 0.62 16 38 H 0.40 3.80 6.81 -40.82 -0.28 3.52 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.61 7.36 -52.48 -0.39 1.22 16 47 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.84 7.60 -51.93 -0.39 0.44 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -33.94 391.46 -10.31 -44.25 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -7.95 Total: 10.61 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -3.72 Total: -12.30 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.28 Total: -53.42 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -0.11 Total: -11.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.94 -10.31 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026577455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.004 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds