Wall clock time and date at job start Wed Apr 1 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00629 * 2 1 4 4 H 1.48499 * 109.47037 * 270.00341 * 3 2 1 5 5 H 1.48504 * 109.47021 * 29.99837 * 3 2 1 6 6 H 1.48498 * 109.47454 * 149.99903 * 3 2 1 7 7 C 1.38817 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99854 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00259 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00212 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47030 * 204.99599 * 10 9 7 12 12 C 1.53003 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.46935 * 60.00107 * 12 11 10 14 14 N 1.46496 * 109.47115 * 59.99846 * 13 12 11 15 15 C 1.34774 * 119.99915 * 155.00056 * 14 13 12 16 16 O 1.21279 * 120.00352 * 5.05686 * 15 14 13 17 17 C 1.50708 * 119.99871 * 185.05936 * 15 14 13 18 18 H 1.08992 * 109.43673 * 337.58800 * 17 15 14 19 19 C 1.53071 * 109.43727 * 97.50885 * 17 15 14 20 20 C 1.53399 * 108.30433 * 168.25651 * 19 17 15 21 21 O 1.42829 * 108.37539 * 295.29060 * 20 19 17 22 22 C 1.35843 * 117.86029 * 49.20123 * 21 20 19 23 23 C 1.39144 * 118.49774 * 163.03047 * 22 21 20 24 24 C 1.37964 * 120.21452 * 179.55560 * 23 22 21 25 25 C 1.38291 * 119.95568 * 0.03556 * 24 23 22 26 26 C 1.38103 * 119.98817 * 0.06765 * 25 24 23 27 27 C 1.38373 * 121.80248 * 342.73747 * 22 21 20 28 28 C 1.53001 * 109.47195 * 299.99766 * 13 12 11 29 29 C 1.53003 * 109.46988 * 60.00266 * 28 13 12 30 30 H 0.97003 * 119.99456 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99969 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46683 * 324.99700 * 10 9 7 33 33 H 1.08994 * 109.47109 * 59.99662 * 11 10 9 34 34 H 1.09004 * 109.46948 * 299.99601 * 11 10 9 35 35 H 1.08993 * 109.47178 * 300.00469 * 12 11 10 36 36 H 1.08992 * 109.46806 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.46973 * 180.02562 * 13 12 11 38 38 H 0.96999 * 120.00453 * 334.99659 * 14 13 12 39 39 H 1.09004 * 109.69295 * 287.96251 * 19 17 15 40 40 H 1.09003 * 109.69621 * 48.55014 * 19 17 15 41 41 H 1.09006 * 109.68191 * 55.00679 * 20 19 17 42 42 H 1.08996 * 109.68716 * 175.56578 * 20 19 17 43 43 H 1.08000 * 119.89268 * 359.59556 * 23 22 21 44 44 H 1.08001 * 120.01973 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.00174 * 180.02562 * 25 24 23 46 46 H 1.08003 * 119.84166 * 179.97438 * 26 25 24 47 47 H 1.08995 * 109.46986 * 179.97438 * 28 13 12 48 48 H 1.08995 * 109.47016 * 300.00563 * 28 13 12 49 49 H 1.09003 * 109.47190 * 180.02562 * 29 28 13 50 50 H 1.08991 * 109.47424 * 60.00019 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2024 0.0000 10 6 4.1119 -2.4711 -0.0011 11 6 5.4990 -2.2599 0.6092 12 6 6.2636 -3.5851 0.6086 13 6 6.4102 -4.0887 -0.8288 14 7 7.1464 -3.0997 -1.6200 15 6 7.8293 -3.4864 -2.7156 16 8 7.7604 -4.6349 -3.0992 17 6 8.6788 -2.4917 -3.4642 18 1 8.3291 -1.4820 -3.2494 19 6 10.1370 -2.6311 -3.0202 20 6 11.0148 -1.8313 -3.9912 21 8 10.9218 -2.4338 -5.2829 22 6 9.6828 -2.7074 -5.7680 23 6 9.5423 -2.9511 -7.1307 24 6 8.3017 -3.2416 -7.6598 25 6 7.1932 -3.2905 -6.8344 26 6 7.3286 -3.0471 -5.4817 27 6 8.5715 -2.7545 -4.9450 28 6 5.0232 -4.2999 -1.4391 29 6 4.2585 -2.9747 -1.4385 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3624 0.0004 32 1 3.5642 -3.2073 0.5874 33 1 5.3945 -1.9015 1.6332 34 1 6.0466 -1.5237 0.0206 35 1 5.7159 -4.3209 1.1972 36 1 7.2519 -3.4345 1.0429 37 1 6.9546 -5.0330 -0.8292 38 1 7.1423 -2.1665 -1.3555 39 1 10.2528 -2.2372 -2.0105 40 1 10.4286 -3.6812 -3.0411 41 1 10.6628 -0.8008 -4.0406 42 1 12.0501 -1.8502 -3.6510 43 1 10.4074 -2.9133 -7.7763 44 1 8.1964 -3.4307 -8.7179 45 1 6.2218 -3.5182 -7.2477 46 1 6.4612 -3.0854 -4.8393 47 1 5.1276 -4.6582 -2.4632 48 1 4.4754 -5.0357 -0.8504 49 1 3.2702 -3.1253 -1.8729 50 1 4.8062 -2.2389 -2.0272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026577455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:28 Heat of formation + Delta-G solvation = -69.996245 kcal Electronic energy + Delta-G solvation = -30869.372932 eV Core-core repulsion = 26860.228276 eV Total energy + Delta-G solvation = -4009.144655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.14212 -40.88946 -39.25698 -38.43988 -36.41593 -35.30685 -34.27458 -32.76966 -31.72353 -31.62254 -31.20710 -29.68973 -27.33866 -25.31897 -24.78338 -23.79846 -23.52369 -22.52576 -22.17647 -20.85387 -20.42360 -19.44830 -18.94955 -18.31192 -17.66822 -17.02825 -16.91131 -16.68551 -16.35104 -16.06364 -15.82228 -15.41892 -15.13840 -15.03673 -14.83766 -14.79142 -14.49565 -14.40127 -14.31509 -14.17207 -13.65638 -13.41805 -13.28982 -13.12850 -12.94724 -12.89274 -12.84882 -12.52424 -12.19557 -12.15517 -12.06106 -11.82556 -11.79986 -11.73023 -11.62616 -11.41302 -11.14292 -10.87639 -10.76607 -10.02951 -9.80892 -9.28656 -9.16341 -8.01162 -5.34237 0.29660 0.43231 1.37179 1.42221 1.49664 1.56620 2.13416 2.37243 2.49779 2.78384 3.30221 3.39911 3.52587 3.59608 3.68808 3.77125 3.86950 3.89073 4.09943 4.12911 4.17822 4.21785 4.27240 4.35828 4.37477 4.48676 4.50122 4.52316 4.57524 4.62415 4.64382 4.65461 4.79305 4.89540 4.95758 5.00059 5.03258 5.07647 5.15489 5.23692 5.27863 5.28955 5.44055 5.47955 5.55623 5.57273 5.61401 5.79588 5.80677 6.23409 6.44873 6.55802 7.10356 7.24023 7.86886 8.06442 9.20880 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012559 B = 0.002878 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.868543 B = 9728.102455 C =10317.080049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.070 4.070 3 Si 0.958 3.042 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.243 1.243 7 C -0.227 4.227 8 H 0.050 0.950 9 N -0.750 5.750 10 C 0.175 3.825 11 C -0.119 4.119 12 C -0.110 4.110 13 C 0.154 3.846 14 N -0.707 5.707 15 C 0.524 3.476 16 O -0.571 6.571 17 C -0.064 4.064 18 H 0.122 0.878 19 C -0.141 4.141 20 C 0.059 3.941 21 O -0.329 6.329 22 C 0.125 3.875 23 C -0.162 4.162 24 C -0.083 4.083 25 C -0.165 4.165 26 C -0.085 4.085 27 C -0.157 4.157 28 C -0.121 4.121 29 C -0.120 4.120 30 H 0.256 0.744 31 H 0.366 0.634 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.411 0.589 39 H 0.122 0.878 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.134 0.866 46 H 0.106 0.894 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.026 0.974 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.770 -4.050 -7.523 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.261 4.261 3 Si 0.785 3.215 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.167 1.167 7 C -0.358 4.358 8 H 0.068 0.932 9 N -0.393 5.393 10 C 0.068 3.932 11 C -0.157 4.157 12 C -0.148 4.148 13 C 0.049 3.951 14 N -0.360 5.360 15 C 0.310 3.690 16 O -0.450 6.450 17 C -0.085 4.085 18 H 0.139 0.861 19 C -0.179 4.179 20 C -0.016 4.016 21 O -0.243 6.243 22 C 0.080 3.920 23 C -0.181 4.181 24 C -0.101 4.101 25 C -0.183 4.183 26 C -0.103 4.103 27 C -0.159 4.159 28 C -0.160 4.160 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.199 0.801 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.248 0.752 39 H 0.140 0.860 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.174 0.826 45 H 0.152 0.848 46 H 0.124 0.876 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 27.706 -4.992 -7.812 29.216 hybrid contribution -1.061 1.254 0.114 1.646 sum 26.645 -3.738 -7.698 27.986 Atomic orbital electron populations 1.69906 1.07365 1.26606 1.60069 1.25565 0.96125 1.01492 1.02901 0.85359 0.78911 0.79263 0.77933 1.20781 1.22640 1.16723 1.19009 0.82949 0.93110 1.40724 0.93187 1.42774 1.02216 1.04092 1.90240 1.20446 0.92237 0.86765 0.93777 1.21754 0.94181 0.98261 1.01485 1.21734 1.01868 0.97044 0.94133 1.20899 0.91001 0.92327 0.90850 1.46123 1.50082 1.12593 1.27182 1.20560 0.79337 0.88704 0.80375 1.90701 1.65273 1.21742 1.67297 1.20252 0.97472 1.00081 0.90709 0.86070 1.22188 0.91164 1.02263 1.02317 1.23291 1.03087 0.96119 0.79060 1.85970 1.24904 1.77049 1.36375 1.18805 0.83609 0.96751 0.92844 1.20888 0.99363 1.05624 0.92175 1.21260 0.91104 0.96655 1.01075 1.21273 1.00215 1.03362 0.93424 1.20952 0.96108 0.97255 0.96002 1.19455 0.93687 1.08137 0.94576 1.21828 0.96179 0.97336 1.00656 1.21971 0.98251 0.96696 0.99085 0.93495 0.80063 0.94431 0.91047 0.90961 0.89642 0.88532 0.89893 0.75180 0.86005 0.91586 0.90002 0.84289 0.83543 0.82624 0.84825 0.87631 0.93518 0.90910 0.95556 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.64 13.97 21.65 0.30 -63.34 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.96 44.39 27.74 68.60 1.90 46.29 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.24 -9.76 6.52 99.48 0.65 -9.11 16 7 C -0.23 -12.75 10.41 84.04 0.87 -11.87 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 N -0.75 -33.10 4.93 -322.92 -1.59 -34.69 16 10 C 0.18 6.05 2.77 44.99 0.12 6.17 16 11 C -0.12 -2.78 5.22 30.60 0.16 -2.62 16 12 C -0.11 -1.96 5.61 30.60 0.17 -1.79 16 13 C 0.15 3.30 2.74 44.99 0.12 3.43 16 14 N -0.71 -13.77 4.23 -442.53 -1.87 -15.64 16 15 C 0.52 12.17 5.68 87.66 0.50 12.67 16 16 O -0.57 -18.22 15.64 -3.03 -0.05 -18.26 16 17 C -0.06 -1.18 2.72 -12.24 -0.03 -1.21 16 18 H 0.12 1.67 8.06 -2.39 -0.02 1.65 16 19 C -0.14 -1.88 5.49 30.75 0.17 -1.71 16 20 C 0.06 0.67 7.03 72.12 0.51 1.18 16 21 O -0.33 -6.40 10.27 -91.79 -0.94 -7.34 16 22 C 0.13 2.81 6.47 22.52 0.15 2.96 16 23 C -0.16 -3.26 9.94 22.42 0.22 -3.04 16 24 C -0.08 -1.58 10.04 22.22 0.22 -1.36 16 25 C -0.16 -3.71 10.04 22.25 0.22 -3.49 16 26 C -0.08 -2.19 8.63 22.30 0.19 -1.99 16 27 C -0.16 -3.70 5.12 -19.74 -0.10 -3.80 16 28 C -0.12 -3.32 5.60 30.60 0.17 -3.15 16 29 C -0.12 -3.98 5.35 30.60 0.16 -3.82 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.37 15.13 5.66 -92.71 -0.52 14.60 16 32 H 0.04 1.43 8.08 -2.38 -0.02 1.41 16 33 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.45 6.51 -2.38 -0.02 1.43 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.88 7.66 -2.39 -0.02 1.86 16 38 H 0.41 6.28 6.81 -92.71 -0.63 5.65 16 39 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 41 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 46 H 0.11 2.94 7.36 -2.91 -0.02 2.92 16 47 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 48 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 49 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.06 1.78 7.60 -2.39 -0.02 1.76 16 Total: -1.00 -78.11 391.46 1.79 -76.32 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.26 Total: 33.73 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 4.30 Total: -17.06 kcal Atomic # 7 Polarization: -110.51 SS G_CDS: -3.16 Total: -113.67 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.99 Total: -25.61 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Total: -78.11 1.79 -76.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026577455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.327 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds