Wall clock time and date at job start Wed Apr 1 2020 02:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47030 * 299.99862 * 3 2 1 6 6 H 1.48496 * 109.47318 * 59.99752 * 3 2 1 7 7 C 1.38805 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00484 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 154.99671 * 10 9 7 12 12 C 1.53002 * 109.46817 * 60.00190 * 11 10 9 13 13 C 1.53000 * 109.47233 * 60.00194 * 12 11 10 14 14 N 1.46500 * 109.47023 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00075 * 204.99547 * 14 13 12 16 16 O 1.21287 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00179 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47204 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.13608 * 54.29710 * 18 17 15 20 20 O 1.43943 * 110.15202 * 292.60158 * 18 17 15 21 21 C 1.43949 * 104.95168 * 212.43640 * 20 18 17 22 22 C 1.51077 * 105.95260 * 28.44088 * 21 20 18 23 23 C 1.37967 * 132.68658 * 162.31410 * 22 21 20 24 24 C 1.38295 * 119.92221 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.03857 * 359.97438 * 24 23 22 26 26 C 1.38290 * 120.04138 * 0.02562 * 25 24 23 27 27 C 1.37870 * 119.95745 * 359.89655 * 26 25 24 28 28 C 1.52997 * 109.47060 * 299.99657 * 13 12 11 29 29 C 1.52999 * 109.47317 * 59.99960 * 28 13 12 30 30 H 0.97000 * 120.00591 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99763 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47054 * 34.99403 * 10 9 7 33 33 H 1.08993 * 109.47194 * 299.99671 * 11 10 9 34 34 H 1.09002 * 109.46695 * 179.97438 * 11 10 9 35 35 H 1.08992 * 109.47063 * 299.99823 * 12 11 10 36 36 H 1.09004 * 109.46733 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.47398 * 59.99826 * 13 12 11 38 38 H 0.96997 * 120.00274 * 24.99518 * 14 13 12 39 39 H 1.08999 * 109.47169 * 300.00043 * 17 15 14 40 40 H 1.08999 * 109.47104 * 60.00393 * 17 15 14 41 41 H 1.08991 * 110.15330 * 147.56497 * 21 20 18 42 42 H 1.08999 * 110.15136 * 269.32317 * 21 20 18 43 43 H 1.08006 * 120.04069 * 0.02562 * 23 22 21 44 44 H 1.07996 * 119.98058 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.97426 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.04111 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47853 * 180.02562 * 28 13 12 48 48 H 1.09002 * 109.47153 * 300.00319 * 28 13 12 49 49 H 1.09000 * 109.47486 * 180.02562 * 29 28 13 50 50 H 1.09002 * 109.46716 * 60.00091 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1810 -4.7521 0.6102 12 6 -0.0973 -4.9012 -0.2172 13 6 0.2666 -5.2801 -1.6542 14 7 -0.9575 -5.4235 -2.4462 15 6 -0.9632 -6.2085 -3.5418 16 8 0.0450 -6.7966 -3.8717 17 6 -2.2225 -6.3565 -4.3562 18 6 -1.9599 -7.2954 -5.5353 19 1 -1.5555 -8.2425 -5.1780 20 8 -1.0442 -6.6835 -6.4622 21 6 -1.4417 -7.1743 -7.7557 22 6 -2.9223 -7.4576 -7.6553 23 6 -3.9071 -7.6358 -8.6050 24 6 -5.2083 -7.8884 -8.2105 25 6 -5.5218 -7.9629 -6.8659 26 6 -4.5348 -7.7843 -5.9140 27 6 -3.2370 -7.5340 -6.3064 28 6 1.1437 -4.1848 -2.2639 29 6 2.4220 -4.0355 -1.4365 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.9689 -3.5504 0.5899 33 1 0.9219 -4.4823 1.6339 34 1 1.7260 -5.6961 0.6098 35 1 -0.6423 -3.9574 -0.2172 36 1 -0.7220 -5.6819 0.2169 37 1 0.8116 -6.2241 -1.6542 38 1 -1.7639 -4.9536 -2.1822 39 1 -3.0129 -6.7715 -3.7309 40 1 -2.5300 -5.3800 -4.7304 41 1 -1.2549 -6.4180 -8.5180 42 1 -0.8995 -8.0895 -7.9930 43 1 -3.6620 -7.5789 -9.6554 44 1 -5.9800 -8.0276 -8.9531 45 1 -6.5382 -8.1606 -6.5590 46 1 -4.7797 -7.8420 -4.8637 47 1 1.4026 -4.4543 -3.2877 48 1 0.5987 -3.2408 -2.2638 49 1 3.0467 -3.2548 -1.8706 50 1 2.9670 -4.9795 -1.4366 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026599540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:52 Heat of formation + Delta-G solvation = -48.194674 kcal Electronic energy + Delta-G solvation = -29867.508645 eV Core-core repulsion = 25859.309376 eV Total energy + Delta-G solvation = -4008.199268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.12979 -39.69012 -38.05207 -37.45291 -34.54567 -33.05919 -32.66452 -31.57779 -30.72625 -30.21776 -29.91884 -27.70901 -26.28036 -24.53278 -23.55132 -22.22674 -22.00406 -21.80319 -20.96669 -20.06154 -18.53422 -17.46537 -17.19445 -16.84745 -16.55533 -16.14896 -15.88243 -15.59115 -15.14527 -14.72414 -14.41235 -14.29322 -14.01487 -13.85137 -13.65894 -13.46007 -13.25733 -13.10507 -12.87163 -12.54252 -12.39480 -12.24265 -11.98229 -11.81381 -11.69665 -11.59358 -11.53846 -11.22039 -10.90687 -10.77767 -10.65115 -10.29259 -10.22069 -10.10419 -10.00958 -9.71181 -9.52912 -9.48282 -9.26903 -8.90297 -8.85074 -8.66610 -6.89869 -5.74236 -3.00926 0.85225 0.95129 2.81943 3.23931 3.37902 3.44884 3.51266 3.52790 3.65551 3.86697 4.30134 4.50963 4.62447 4.62795 4.71431 4.87219 4.98801 5.06289 5.09571 5.15473 5.20279 5.21847 5.29034 5.43159 5.49975 5.50429 5.61113 5.63189 5.66630 5.77008 5.85309 5.91235 5.97694 6.03731 6.04115 6.07089 6.10564 6.17036 6.27038 6.39510 6.49021 6.56276 6.60107 6.71457 6.74286 6.85155 6.97106 7.10930 7.15567 7.72273 7.74892 8.43061 8.45712 9.56950 10.15915 10.50811 11.48894 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002140 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.667017 B =13081.515635 C =13618.133928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.171 3.829 11 C -0.118 4.118 12 C -0.123 4.123 13 C 0.150 3.850 14 N -0.725 5.725 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.140 4.140 18 C 0.140 3.860 19 H 0.092 0.908 20 O -0.337 6.337 21 C 0.086 3.914 22 C -0.128 4.128 23 C -0.096 4.096 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.091 4.091 27 C -0.126 4.126 28 C -0.118 4.118 29 C -0.130 4.130 30 H 0.253 0.747 31 H 0.383 0.617 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.050 0.950 48 H 0.076 0.924 49 H 0.061 0.939 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -19.357 -13.253 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.061 3.939 11 C -0.156 4.156 12 C -0.161 4.161 13 C 0.047 3.953 14 N -0.375 5.375 15 C 0.299 3.701 16 O -0.409 6.409 17 C -0.180 4.180 18 C 0.082 3.918 19 H 0.110 0.890 20 O -0.256 6.256 21 C 0.010 3.990 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.126 4.126 28 C -0.156 4.156 29 C -0.171 4.171 30 H 0.063 0.937 31 H 0.218 0.782 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.095 0.905 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.069 0.931 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.704 -19.494 -13.414 25.971 hybrid contribution -0.535 1.179 -0.079 1.297 sum -11.239 -18.315 -13.493 25.373 Atomic orbital electron populations 1.69655 1.05031 1.25354 1.58409 1.24693 0.95497 0.97539 1.03428 0.86155 0.78834 0.84390 0.77080 1.20635 1.22021 1.22026 1.19314 0.91050 0.84235 1.41705 0.91226 1.42472 1.05680 0.99633 1.88464 1.20259 0.94280 0.86411 0.92935 1.21721 0.95853 0.98881 0.99176 1.21735 0.98815 1.01836 0.93683 1.21025 0.84853 0.99474 0.89984 1.46159 1.14839 1.48732 1.27786 1.20349 0.89938 0.79024 0.80756 1.90716 1.34628 1.46857 1.68721 1.21833 0.97348 1.02627 0.96179 1.21011 0.85286 0.96533 0.88975 0.89018 1.89278 1.52515 1.68814 1.14956 1.21792 0.89255 1.00239 0.87742 1.21174 0.96535 1.00745 0.94364 1.20421 0.92015 0.99988 0.98953 1.21157 0.96145 0.99827 0.96253 1.21155 0.99297 1.00056 0.92951 1.20421 0.90919 0.99528 1.00073 1.21077 0.95263 1.01042 0.95202 1.21729 0.96890 0.98806 0.98215 1.22098 0.96509 0.99616 0.98866 0.93725 0.78224 0.93407 0.91545 0.92362 0.90511 0.92487 0.90270 0.76782 0.87681 0.87872 0.88507 0.90475 0.85697 0.85489 0.85404 0.85576 0.93089 0.90508 0.92003 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -27.77 13.06 55.49 0.72 -27.04 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.23 -6.34 9.93 -15.06 -0.15 -6.49 16 8 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 9 N -0.72 -17.40 4.28 -53.43 -0.23 -17.63 16 10 C 0.17 3.36 3.10 -67.93 -0.21 3.15 16 11 C -0.12 -1.89 5.61 -26.73 -0.15 -2.04 16 12 C -0.12 -1.84 5.22 -26.73 -0.14 -1.98 16 13 C 0.15 2.35 2.45 -67.93 -0.17 2.19 16 14 N -0.72 -9.83 5.08 -53.81 -0.27 -10.11 16 15 C 0.51 7.33 7.70 -10.99 -0.08 7.25 16 16 O -0.53 -9.67 15.20 -5.08 -0.08 -9.75 16 17 C -0.14 -1.47 5.36 -27.88 -0.15 -1.62 16 18 C 0.14 1.61 2.84 -27.70 -0.08 1.53 16 19 H 0.09 1.10 7.95 -51.93 -0.41 0.68 16 20 O -0.34 -4.63 10.83 -45.86 -0.50 -5.13 16 21 C 0.09 0.87 7.63 36.19 0.28 1.14 16 22 C -0.13 -1.23 6.33 -104.36 -0.66 -1.89 16 23 C -0.10 -0.75 10.04 -39.66 -0.40 -1.14 16 24 C -0.12 -0.80 10.05 -39.55 -0.40 -1.19 16 25 C -0.12 -0.81 10.05 -39.55 -0.40 -1.21 16 26 C -0.09 -0.73 9.79 -39.70 -0.39 -1.12 16 27 C -0.13 -1.23 5.73 -104.39 -0.60 -1.83 16 28 C -0.12 -2.17 5.34 -26.73 -0.14 -2.31 16 29 C -0.13 -2.43 5.61 -26.73 -0.15 -2.58 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.38 9.68 6.06 -40.82 -0.25 9.43 16 32 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.30 6.50 -51.93 -0.34 0.96 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 38 H 0.40 4.49 8.60 -40.82 -0.35 4.14 16 39 H 0.11 0.77 7.88 -51.93 -0.41 0.36 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.13 0.75 7.90 -52.49 -0.41 0.33 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.62 7.60 -51.93 -0.39 1.22 16 49 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -33.72 399.34 -11.44 -45.16 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.00 Total: 11.75 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -4.08 Total: -10.72 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.22 Total: -54.78 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.57 Total: -14.88 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.72 -11.44 -45.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.035 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds