Wall clock time and date at job start Wed Apr 1 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99708 * 2 1 4 4 H 1.48496 * 109.47183 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47030 * 299.99862 * 3 2 1 6 6 H 1.48496 * 109.47318 * 59.99752 * 3 2 1 7 7 C 1.38805 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00039 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00484 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47294 * 154.99671 * 10 9 7 12 12 C 1.53002 * 109.46817 * 60.00190 * 11 10 9 13 13 C 1.53000 * 109.47233 * 60.00194 * 12 11 10 14 14 N 1.46500 * 109.47023 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00075 * 204.99547 * 14 13 12 16 16 O 1.21287 * 119.99865 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00179 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47204 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.13608 * 54.29710 * 18 17 15 20 20 O 1.43943 * 110.15202 * 292.60158 * 18 17 15 21 21 C 1.43949 * 104.95168 * 212.43640 * 20 18 17 22 22 C 1.51077 * 105.95260 * 28.44088 * 21 20 18 23 23 C 1.37967 * 132.68658 * 162.31410 * 22 21 20 24 24 C 1.38295 * 119.92221 * 179.97438 * 23 22 21 25 25 C 1.38268 * 120.03857 * 359.97438 * 24 23 22 26 26 C 1.38290 * 120.04138 * 0.02562 * 25 24 23 27 27 C 1.37870 * 119.95745 * 359.89655 * 26 25 24 28 28 C 1.52997 * 109.47060 * 299.99657 * 13 12 11 29 29 C 1.52999 * 109.47317 * 59.99960 * 28 13 12 30 30 H 0.97000 * 120.00591 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99763 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47054 * 34.99403 * 10 9 7 33 33 H 1.08993 * 109.47194 * 299.99671 * 11 10 9 34 34 H 1.09002 * 109.46695 * 179.97438 * 11 10 9 35 35 H 1.08992 * 109.47063 * 299.99823 * 12 11 10 36 36 H 1.09004 * 109.46733 * 179.97438 * 12 11 10 37 37 H 1.09002 * 109.47398 * 59.99826 * 13 12 11 38 38 H 0.96997 * 120.00274 * 24.99518 * 14 13 12 39 39 H 1.08999 * 109.47169 * 300.00043 * 17 15 14 40 40 H 1.08999 * 109.47104 * 60.00393 * 17 15 14 41 41 H 1.08991 * 110.15330 * 147.56497 * 21 20 18 42 42 H 1.08999 * 110.15136 * 269.32317 * 21 20 18 43 43 H 1.08006 * 120.04069 * 0.02562 * 23 22 21 44 44 H 1.07996 * 119.98058 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.97426 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.04111 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47853 * 180.02562 * 28 13 12 48 48 H 1.09002 * 109.47153 * 300.00319 * 28 13 12 49 49 H 1.09000 * 109.47486 * 180.02562 * 29 28 13 50 50 H 1.09002 * 109.46716 * 60.00091 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1810 -4.7521 0.6102 12 6 -0.0973 -4.9012 -0.2172 13 6 0.2666 -5.2801 -1.6542 14 7 -0.9575 -5.4235 -2.4462 15 6 -0.9632 -6.2085 -3.5418 16 8 0.0450 -6.7966 -3.8717 17 6 -2.2225 -6.3565 -4.3562 18 6 -1.9599 -7.2954 -5.5353 19 1 -1.5555 -8.2425 -5.1780 20 8 -1.0442 -6.6835 -6.4622 21 6 -1.4417 -7.1743 -7.7557 22 6 -2.9223 -7.4576 -7.6553 23 6 -3.9071 -7.6358 -8.6050 24 6 -5.2083 -7.8884 -8.2105 25 6 -5.5218 -7.9629 -6.8659 26 6 -4.5348 -7.7843 -5.9140 27 6 -3.2370 -7.5340 -6.3064 28 6 1.1437 -4.1848 -2.2639 29 6 2.4220 -4.0355 -1.4365 30 1 -0.4851 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 2.9689 -3.5504 0.5899 33 1 0.9219 -4.4823 1.6339 34 1 1.7260 -5.6961 0.6098 35 1 -0.6423 -3.9574 -0.2172 36 1 -0.7220 -5.6819 0.2169 37 1 0.8116 -6.2241 -1.6542 38 1 -1.7639 -4.9536 -2.1822 39 1 -3.0129 -6.7715 -3.7309 40 1 -2.5300 -5.3800 -4.7304 41 1 -1.2549 -6.4180 -8.5180 42 1 -0.8995 -8.0895 -7.9930 43 1 -3.6620 -7.5789 -9.6554 44 1 -5.9800 -8.0276 -8.9531 45 1 -6.5382 -8.1606 -6.5590 46 1 -4.7797 -7.8420 -4.8637 47 1 1.4026 -4.4543 -3.2877 48 1 0.5987 -3.2408 -2.2638 49 1 3.0467 -3.2548 -1.8706 50 1 2.9670 -4.9795 -1.4366 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026599540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:51 Heat of formation + Delta-G solvation = -68.706765 kcal Electronic energy + Delta-G solvation = -29868.398116 eV Core-core repulsion = 25859.309376 eV Total energy + Delta-G solvation = -4009.088739 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.89235 -40.88019 -39.37915 -38.24253 -36.08907 -34.55165 -33.74512 -32.24680 -32.13803 -31.63518 -31.01583 -29.19810 -27.14048 -25.64672 -25.19382 -23.60303 -23.12098 -22.51324 -21.94357 -21.17431 -20.02701 -19.22580 -18.38465 -17.66401 -17.51737 -17.12186 -16.69792 -16.59329 -16.41726 -16.06316 -15.93743 -15.40866 -15.24643 -15.15025 -14.82841 -14.63321 -14.48984 -13.99397 -13.81353 -13.63376 -13.57690 -13.27172 -13.25129 -13.11746 -13.01649 -12.87071 -12.71258 -12.61422 -12.21134 -12.20324 -12.03809 -11.87887 -11.81232 -11.65237 -11.21765 -11.19735 -11.04226 -10.89995 -10.69836 -9.95684 -9.84698 -9.55031 -8.92236 -7.90657 -5.15601 0.25600 0.39046 1.46649 1.47630 1.56605 1.69787 2.22800 2.58436 2.73456 2.86954 3.19971 3.42642 3.55993 3.76172 3.81169 3.91024 3.94285 4.05573 4.10043 4.17740 4.22040 4.25624 4.39577 4.40534 4.41902 4.45191 4.50279 4.61911 4.65786 4.68477 4.70364 4.77046 4.81231 4.86896 4.88641 5.01664 5.09024 5.14432 5.27186 5.32781 5.33107 5.40336 5.43961 5.49710 5.54083 5.58279 5.63181 5.66009 5.79041 6.00128 6.33540 6.62869 7.32537 7.40167 8.18678 8.42845 9.32990 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002140 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.667017 B =13081.515635 C =13618.133928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.164 3.836 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.160 3.840 14 N -0.718 5.718 15 C 0.511 3.489 16 O -0.575 6.575 17 C -0.130 4.130 18 C 0.138 3.862 19 H 0.078 0.922 20 O -0.375 6.375 21 C 0.081 3.919 22 C -0.146 4.146 23 C -0.103 4.103 24 C -0.117 4.117 25 C -0.118 4.118 26 C -0.096 4.096 27 C -0.141 4.141 28 C -0.108 4.108 29 C -0.124 4.124 30 H 0.249 0.751 31 H 0.376 0.624 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.411 0.589 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.146 0.854 47 H 0.035 0.965 48 H 0.045 0.955 49 H 0.036 0.964 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.466 -20.816 -13.257 28.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.056 3.944 11 C -0.150 4.150 12 C -0.151 4.151 13 C 0.055 3.945 14 N -0.369 5.369 15 C 0.298 3.702 16 O -0.455 6.455 17 C -0.170 4.170 18 C 0.080 3.920 19 H 0.096 0.904 20 O -0.294 6.294 21 C 0.005 3.995 22 C -0.147 4.147 23 C -0.121 4.121 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.114 4.114 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.165 4.165 30 H 0.057 0.943 31 H 0.210 0.790 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.247 0.753 39 H 0.161 0.839 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.160 0.840 44 H 0.171 0.829 45 H 0.172 0.828 46 H 0.164 0.836 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.402 -20.975 -13.413 27.815 hybrid contribution 0.022 1.556 -0.141 1.562 sum -12.380 -19.420 -13.554 26.723 Atomic orbital electron populations 1.69786 1.06219 1.25589 1.60229 1.25396 0.96339 1.00501 1.04533 0.85207 0.78233 0.80703 0.76476 1.19513 1.22550 1.22103 1.19633 0.91277 0.85558 1.39813 0.91235 1.42609 1.05511 1.00440 1.88278 1.20487 0.94568 0.85887 0.93459 1.21663 0.95877 0.98556 0.98877 1.21647 0.98544 1.01840 0.93040 1.20798 0.85282 0.97959 0.90447 1.46077 1.14672 1.48594 1.27528 1.21006 0.90616 0.78018 0.80538 1.90695 1.36463 1.48577 1.69727 1.21870 0.96224 1.03052 0.95850 1.21003 0.85951 0.95929 0.89112 0.90438 1.89223 1.53932 1.69526 1.16716 1.21917 0.90290 1.00644 0.86674 1.21245 0.96325 1.02086 0.95005 1.20714 0.92137 0.99620 0.99603 1.21550 0.96257 0.98538 0.97085 1.21544 1.00302 0.98937 0.92826 1.20726 0.90195 0.98918 1.01560 1.21017 0.95391 1.02812 0.94951 1.21589 0.97064 0.98361 0.97657 1.22000 0.96479 0.99940 0.98064 0.94257 0.79014 0.93820 0.91470 0.89500 0.92532 0.89265 0.90378 0.75254 0.83943 0.87460 0.87741 0.90049 0.83989 0.82897 0.82770 0.83580 0.94635 0.93645 0.94490 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 2 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 3 Si 0.96 46.74 29.55 68.60 2.03 48.77 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 7 C -0.23 -12.74 9.93 84.03 0.83 -11.91 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.73 -35.50 4.28 -322.94 -1.38 -36.88 16 10 C 0.16 6.38 3.10 44.99 0.14 6.52 16 11 C -0.11 -3.36 5.61 30.59 0.17 -3.19 16 12 C -0.11 -3.19 5.22 30.60 0.16 -3.03 16 13 C 0.16 4.85 2.45 44.99 0.11 4.96 16 14 N -0.72 -18.84 5.08 -442.53 -2.25 -21.09 16 15 C 0.51 14.39 7.70 87.66 0.68 15.07 16 16 O -0.58 -21.22 15.20 7.11 0.11 -21.11 16 17 C -0.13 -2.63 5.36 29.85 0.16 -2.47 16 18 C 0.14 3.18 2.84 29.97 0.09 3.26 16 19 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 20 O -0.37 -10.73 10.83 -138.81 -1.50 -12.23 16 21 C 0.08 1.68 7.63 71.36 0.54 2.23 16 22 C -0.15 -2.74 6.33 -19.69 -0.12 -2.86 16 23 C -0.10 -1.44 10.04 22.22 0.22 -1.21 16 24 C -0.12 -1.28 10.05 22.29 0.22 -1.06 16 25 C -0.12 -1.29 10.05 22.29 0.22 -1.06 16 26 C -0.10 -1.31 9.79 22.19 0.22 -1.09 16 27 C -0.14 -2.65 5.73 -19.71 -0.11 -2.76 16 28 C -0.11 -4.04 5.34 30.59 0.16 -3.88 16 29 C -0.12 -4.65 5.61 30.60 0.17 -4.48 16 30 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 31 H 0.38 19.32 6.06 -92.71 -0.56 18.76 16 32 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.87 6.50 -2.39 -0.02 1.85 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.46 7.58 -2.39 -0.02 2.45 16 38 H 0.41 8.71 8.60 -92.71 -0.80 7.91 16 39 H 0.14 1.72 7.88 -2.39 -0.02 1.70 16 40 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.15 0.82 8.06 -2.91 -0.02 0.79 16 46 H 0.15 1.28 7.90 -2.91 -0.02 1.26 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.04 1.98 7.60 -2.39 -0.02 1.96 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -74.98 399.34 1.21 -73.77 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -0.41 Total: 37.67 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 4.33 Total: -10.82 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.35 Total: -116.04 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.39 Total: -33.34 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -74.98 1.21 -73.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.061 kcal (2) G-P(sol) polarization free energy of solvation -74.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds