Wall clock time and date at job start Wed Apr 1 2020 02:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99508 * 2 1 4 4 H 1.48501 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46832 * 299.99500 * 3 2 1 6 6 H 1.48493 * 109.47352 * 59.99556 * 3 2 1 7 7 C 1.38809 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99845 * 162.10339 * 7 2 1 9 9 N 1.36938 * 120.00320 * 342.10148 * 7 2 1 10 10 C 1.43436 * 120.53889 * 152.99909 * 9 7 2 11 11 C 1.54901 * 115.92697 * 271.65643 * 10 9 7 12 12 C 1.54703 * 110.20974 * 318.34539 * 11 10 9 13 13 C 1.50124 * 110.91242 * 321.43499 * 12 11 10 14 14 C 1.52533 * 105.41224 * 97.52869 * 13 12 11 15 15 H 1.08997 * 108.52029 * 31.83729 * 14 13 12 16 16 N 1.46505 * 108.39830 * 149.44190 * 14 13 12 17 17 C 1.34773 * 119.99693 * 209.64002 * 16 14 13 18 18 O 1.21279 * 120.00071 * 5.14851 * 17 16 14 19 19 C 1.50704 * 120.00023 * 185.14268 * 17 16 14 20 20 H 1.09003 * 109.33385 * 130.06915 * 19 17 16 21 21 O 1.42723 * 109.33514 * 10.39277 * 19 17 16 22 22 C 1.43160 * 113.17318 * 187.81796 * 21 19 17 23 23 C 1.52972 * 108.33036 * 70.90784 * 22 21 19 24 24 C 1.50744 * 109.76458 * 310.73203 * 23 22 21 25 25 C 1.38595 * 118.76761 * 196.79275 * 24 23 22 26 26 C 1.38063 * 120.27684 * 180.47225 * 25 24 23 27 27 C 1.38258 * 119.86296 * 359.97438 * 26 25 24 28 28 C 1.38055 * 119.89979 * 359.90652 * 27 26 25 29 29 C 1.37905 * 121.34841 * 17.07740 * 24 23 22 30 30 C 1.46231 * 114.27816 * 270.59251 * 14 13 12 31 31 H 0.97000 * 120.00883 * 0.02562 * 1 2 3 32 32 H 1.09000 * 108.15383 * 33.26420 * 10 9 7 33 33 H 1.08996 * 108.15498 * 150.03914 * 10 9 7 34 34 H 1.08997 * 109.35665 * 78.74285 * 11 10 9 35 35 H 1.09000 * 109.35267 * 198.32672 * 11 10 9 36 36 H 1.09002 * 109.28690 * 200.98475 * 12 11 10 37 37 H 1.09006 * 109.00337 * 81.70530 * 12 11 10 38 38 H 1.08999 * 110.24932 * 338.55883 * 13 12 11 39 39 H 1.09004 * 110.24980 * 216.50258 * 13 12 11 40 40 H 0.96999 * 119.99947 * 29.64177 * 16 14 13 41 41 H 1.09001 * 109.74406 * 311.23857 * 22 21 19 42 42 H 1.08993 * 109.84131 * 190.63713 * 22 21 19 43 43 H 1.09006 * 109.41862 * 190.64721 * 23 22 21 44 44 H 1.08997 * 109.38095 * 70.79157 * 23 22 21 45 45 H 1.07996 * 119.86245 * 0.47156 * 25 24 23 46 46 H 1.08006 * 120.07133 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.05593 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.85252 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.84872 * 298.90820 * 30 14 13 50 50 H 1.09003 * 109.84846 * 177.91454 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0511 -1.2248 -0.2869 9 7 1.3754 -2.3592 0.3655 10 6 1.8185 -3.6252 -0.1428 11 6 1.1922 -4.0718 -1.4873 12 6 -0.3220 -3.7549 -1.5030 13 6 -0.9374 -4.0130 -0.1583 14 6 -0.9916 -2.6532 0.5305 15 1 -1.1347 -1.8854 -0.2298 16 7 -2.1478 -2.6363 1.4301 17 6 -2.7812 -1.4757 1.6917 18 8 -2.4540 -0.4622 1.1116 19 6 -3.8960 -1.4375 2.7050 20 1 -3.7177 -0.6230 3.4071 21 8 -3.9315 -2.6748 3.4154 22 6 -5.0694 -2.7981 4.2754 23 6 -6.3138 -2.9774 3.4041 24 6 -6.3382 -1.9229 2.3271 25 6 -7.5275 -1.6802 1.6581 26 6 -7.5828 -0.7283 0.6596 27 6 -6.4471 -0.0138 0.3261 28 6 -5.2626 -0.2532 0.9936 29 6 -5.2060 -1.2081 1.9971 30 6 0.2042 -2.3233 1.3047 31 1 -0.4851 0.8400 -0.0004 32 1 2.9001 -3.5803 -0.2702 33 1 1.5980 -4.3873 0.6046 34 1 1.6822 -3.5458 -2.3066 35 1 1.3346 -5.1451 -1.6133 36 1 -0.8131 -4.3807 -2.2483 37 1 -0.4624 -2.7065 -1.7664 38 1 -0.3167 -4.7017 0.4148 39 1 -1.9430 -4.4173 -0.2750 40 1 -2.4575 -3.4604 1.8374 41 1 -5.1728 -1.8976 4.8808 42 1 -4.9495 -3.6647 4.9255 43 1 -7.2062 -2.8840 4.0231 44 1 -6.2938 -3.9652 2.9437 45 1 -8.4147 -2.2380 1.9189 46 1 -8.5114 -0.5416 0.1407 47 1 -6.4867 0.7313 -0.4548 48 1 -4.3761 0.3057 0.7327 49 1 0.3446 -3.0562 2.0992 50 1 0.1041 -1.3261 1.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034340948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:02 Heat of formation + Delta-G solvation = -18.415825 kcal Electronic energy + Delta-G solvation = -32060.235420 eV Core-core repulsion = 28053.327459 eV Total energy + Delta-G solvation = -4006.907961 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.64843 -38.95152 -37.62738 -37.21337 -33.94989 -33.11128 -33.03819 -31.69081 -30.68542 -29.96224 -29.12948 -26.32187 -25.82952 -24.11945 -23.95693 -22.88350 -22.27222 -20.47731 -19.97891 -19.57375 -18.70757 -17.25895 -17.09998 -16.56803 -16.14312 -15.60934 -15.30889 -15.01506 -14.76795 -14.49256 -14.27306 -14.06295 -13.74112 -13.58574 -13.47789 -13.14726 -13.05398 -12.68022 -12.33234 -12.28894 -12.11985 -11.95493 -11.78530 -11.75742 -11.26823 -11.17788 -11.14177 -10.76716 -10.67822 -10.58707 -10.13286 -10.05559 -9.78208 -9.75756 -9.67833 -9.45706 -9.29791 -9.14720 -8.71617 -8.55237 -8.36009 -8.02073 -6.51998 -5.56034 -3.04371 1.27332 1.39823 3.29267 3.48002 3.56632 3.57224 3.57975 3.76534 3.96091 4.53231 4.65210 4.65892 4.71598 4.98617 5.03779 5.10313 5.30055 5.32069 5.37291 5.42206 5.52087 5.61064 5.67085 5.68754 5.71204 5.73148 5.83515 5.93344 5.97594 6.12329 6.21949 6.30355 6.40991 6.42470 6.50996 6.55398 6.57730 6.61692 6.70497 6.90377 6.95087 7.01818 7.03328 7.07841 7.19140 7.28048 7.41292 7.71145 7.72825 8.00302 8.42857 8.61285 9.07052 9.36488 10.00445 10.54878 11.48472 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003780 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.157102 B = 7406.523066 C = 8242.610217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.012 3.988 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.274 4.274 8 H 0.064 0.936 9 N -0.580 5.580 10 C 0.158 3.842 11 C -0.143 4.143 12 C -0.105 4.105 13 C -0.121 4.121 14 C 0.124 3.876 15 H 0.135 0.865 16 N -0.716 5.716 17 C 0.517 3.483 18 O -0.485 6.485 19 C 0.112 3.888 20 H 0.097 0.903 21 O -0.367 6.367 22 C 0.060 3.940 23 C -0.114 4.114 24 C -0.073 4.073 25 C -0.128 4.128 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.096 4.096 29 C -0.109 4.109 30 C 0.162 3.838 31 H 0.261 0.739 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.390 0.610 41 H 0.056 0.944 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.149 0.851 49 H 0.004 0.996 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 -7.338 6.173 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.189 4.189 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.404 4.404 8 H 0.082 0.918 9 N -0.302 5.302 10 C 0.029 3.971 11 C -0.185 4.185 12 C -0.143 4.143 13 C -0.160 4.160 14 C 0.021 3.979 15 H 0.152 0.848 16 N -0.367 5.367 17 C 0.299 3.701 18 O -0.358 6.358 19 C 0.051 3.949 20 H 0.114 0.886 21 O -0.286 6.286 22 C -0.017 4.017 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.146 4.146 26 C -0.134 4.134 27 C -0.142 4.142 28 C -0.114 4.114 29 C -0.110 4.110 30 C 0.037 3.963 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.223 0.777 41 H 0.075 0.925 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.167 0.833 49 H 0.023 0.977 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.105 -6.561 5.739 17.440 hybrid contribution -0.194 0.649 0.099 0.685 sum -15.299 -5.912 5.838 17.410 Atomic orbital electron populations 1.69797 1.03926 1.26041 1.50728 1.25065 0.95354 0.97887 1.00641 0.86434 0.79367 0.85065 0.77033 1.20660 1.22012 1.21852 1.19049 0.92866 0.84941 1.43513 0.91821 1.43994 1.35092 1.01937 1.49160 1.20424 0.96334 0.88353 0.92013 1.22870 0.95956 0.98038 1.01587 1.21259 0.95417 1.02222 0.95374 1.21335 0.99252 0.97608 0.97759 1.21277 0.84711 0.97628 0.94307 0.84782 1.46385 1.32312 1.09157 1.48876 1.19669 0.82287 0.85127 0.83029 1.90880 1.63080 1.32771 1.49089 1.21303 0.92463 0.88079 0.93054 0.88571 1.88026 1.44766 1.36868 1.58941 1.22615 0.84943 1.02307 0.91827 1.21137 0.99493 0.98251 0.96268 1.19434 0.92914 0.97079 0.97868 1.20949 0.97068 0.99193 0.97348 1.21122 0.98406 0.96423 0.97494 1.21156 0.92796 1.00159 1.00125 1.21650 0.99277 0.96670 0.93828 1.19796 0.94232 0.98285 0.98642 1.20352 0.85497 1.00386 0.90053 0.92812 0.95070 0.95626 0.93064 0.94099 0.94608 0.90647 0.92145 0.92936 0.77654 0.92541 0.88033 0.89860 0.89643 0.86236 0.86216 0.85908 0.83340 0.97748 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 7.89 55.49 0.44 -23.87 16 2 C 0.01 0.34 4.92 -17.43 -0.09 0.25 16 3 Si 0.89 22.16 29.59 -169.99 -5.03 17.13 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.27 -7.52 9.60 -15.06 -0.14 -7.66 16 8 H 0.06 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.58 -14.37 2.58 -175.08 -0.45 -14.82 16 10 C 0.16 3.35 5.18 -4.66 -0.02 3.33 16 11 C -0.14 -2.75 6.40 -24.83 -0.16 -2.91 16 12 C -0.10 -2.04 5.64 -27.27 -0.15 -2.19 16 13 C -0.12 -2.24 5.25 -28.40 -0.15 -2.39 16 14 C 0.12 2.64 1.87 -71.38 -0.13 2.51 16 15 H 0.13 3.46 4.32 -51.93 -0.22 3.23 16 16 N -0.72 -13.34 4.78 -57.21 -0.27 -13.61 16 17 C 0.52 9.96 6.74 -10.98 -0.07 9.89 16 18 O -0.48 -11.15 12.71 5.56 0.07 -11.08 16 19 C 0.11 1.73 3.22 -29.05 -0.09 1.63 16 20 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 21 O -0.37 -4.95 9.21 -35.23 -0.32 -5.27 16 22 C 0.06 0.58 6.85 37.14 0.25 0.83 16 23 C -0.11 -1.06 6.00 -27.88 -0.17 -1.23 16 24 C -0.07 -0.89 5.78 -104.59 -0.60 -1.50 16 25 C -0.13 -1.41 9.67 -39.51 -0.38 -1.80 16 26 C -0.12 -1.32 10.05 -39.64 -0.40 -1.72 16 27 C -0.12 -1.64 10.05 -39.64 -0.40 -2.03 16 28 C -0.10 -1.50 9.07 -39.50 -0.36 -1.85 16 29 C -0.11 -1.59 5.46 -104.61 -0.57 -2.17 16 30 C 0.16 3.83 4.66 -5.20 -0.02 3.80 16 31 H 0.26 7.49 8.14 -40.82 -0.33 7.16 16 32 H 0.03 0.66 8.00 -51.93 -0.42 0.25 16 33 H 0.03 0.50 6.88 -51.93 -0.36 0.15 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 1.75 6.83 -51.93 -0.35 1.40 16 38 H 0.06 1.07 6.28 -51.93 -0.33 0.75 16 39 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 40 H 0.39 6.36 7.50 -40.82 -0.31 6.05 16 41 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 47 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.15 2.64 5.88 -52.49 -0.31 2.33 16 49 H 0.00 0.10 8.12 -51.93 -0.42 -0.32 16 50 H 0.09 2.43 6.28 -51.93 -0.33 2.10 16 LS Contribution 377.87 15.07 5.69 5.69 Total: -1.00 -30.25 377.87 -11.19 -41.44 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.65 Total: 9.61 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.67 Total: -5.21 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.29 Total: -52.31 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.25 Total: -16.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.25 -11.19 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.019 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds