Wall clock time and date at job start Wed Apr 1 2020 02:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99508 * 2 1 4 4 H 1.48501 * 109.47152 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46832 * 299.99500 * 3 2 1 6 6 H 1.48493 * 109.47352 * 59.99556 * 3 2 1 7 7 C 1.38809 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99845 * 162.10339 * 7 2 1 9 9 N 1.36938 * 120.00320 * 342.10148 * 7 2 1 10 10 C 1.43436 * 120.53889 * 152.99909 * 9 7 2 11 11 C 1.54901 * 115.92697 * 271.65643 * 10 9 7 12 12 C 1.54703 * 110.20974 * 318.34539 * 11 10 9 13 13 C 1.50124 * 110.91242 * 321.43499 * 12 11 10 14 14 C 1.52533 * 105.41224 * 97.52869 * 13 12 11 15 15 H 1.08997 * 108.52029 * 31.83729 * 14 13 12 16 16 N 1.46505 * 108.39830 * 149.44190 * 14 13 12 17 17 C 1.34773 * 119.99693 * 209.64002 * 16 14 13 18 18 O 1.21279 * 120.00071 * 5.14851 * 17 16 14 19 19 C 1.50704 * 120.00023 * 185.14268 * 17 16 14 20 20 H 1.09003 * 109.33385 * 130.06915 * 19 17 16 21 21 O 1.42723 * 109.33514 * 10.39277 * 19 17 16 22 22 C 1.43160 * 113.17318 * 187.81796 * 21 19 17 23 23 C 1.52972 * 108.33036 * 70.90784 * 22 21 19 24 24 C 1.50744 * 109.76458 * 310.73203 * 23 22 21 25 25 C 1.38595 * 118.76761 * 196.79275 * 24 23 22 26 26 C 1.38063 * 120.27684 * 180.47225 * 25 24 23 27 27 C 1.38258 * 119.86296 * 359.97438 * 26 25 24 28 28 C 1.38055 * 119.89979 * 359.90652 * 27 26 25 29 29 C 1.37905 * 121.34841 * 17.07740 * 24 23 22 30 30 C 1.46231 * 114.27816 * 270.59251 * 14 13 12 31 31 H 0.97000 * 120.00883 * 0.02562 * 1 2 3 32 32 H 1.09000 * 108.15383 * 33.26420 * 10 9 7 33 33 H 1.08996 * 108.15498 * 150.03914 * 10 9 7 34 34 H 1.08997 * 109.35665 * 78.74285 * 11 10 9 35 35 H 1.09000 * 109.35267 * 198.32672 * 11 10 9 36 36 H 1.09002 * 109.28690 * 200.98475 * 12 11 10 37 37 H 1.09006 * 109.00337 * 81.70530 * 12 11 10 38 38 H 1.08999 * 110.24932 * 338.55883 * 13 12 11 39 39 H 1.09004 * 110.24980 * 216.50258 * 13 12 11 40 40 H 0.96999 * 119.99947 * 29.64177 * 16 14 13 41 41 H 1.09001 * 109.74406 * 311.23857 * 22 21 19 42 42 H 1.08993 * 109.84131 * 190.63713 * 22 21 19 43 43 H 1.09006 * 109.41862 * 190.64721 * 23 22 21 44 44 H 1.08997 * 109.38095 * 70.79157 * 23 22 21 45 45 H 1.07996 * 119.86245 * 0.47156 * 25 24 23 46 46 H 1.08006 * 120.07133 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.05593 * 179.97438 * 27 26 25 48 48 H 1.07997 * 119.85252 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.84872 * 298.90820 * 30 14 13 50 50 H 1.09003 * 109.84846 * 177.91454 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0511 -1.2248 -0.2869 9 7 1.3754 -2.3592 0.3655 10 6 1.8185 -3.6252 -0.1428 11 6 1.1922 -4.0718 -1.4873 12 6 -0.3220 -3.7549 -1.5030 13 6 -0.9374 -4.0130 -0.1583 14 6 -0.9916 -2.6532 0.5305 15 1 -1.1347 -1.8854 -0.2298 16 7 -2.1478 -2.6363 1.4301 17 6 -2.7812 -1.4757 1.6917 18 8 -2.4540 -0.4622 1.1116 19 6 -3.8960 -1.4375 2.7050 20 1 -3.7177 -0.6230 3.4071 21 8 -3.9315 -2.6748 3.4154 22 6 -5.0694 -2.7981 4.2754 23 6 -6.3138 -2.9774 3.4041 24 6 -6.3382 -1.9229 2.3271 25 6 -7.5275 -1.6802 1.6581 26 6 -7.5828 -0.7283 0.6596 27 6 -6.4471 -0.0138 0.3261 28 6 -5.2626 -0.2532 0.9936 29 6 -5.2060 -1.2081 1.9971 30 6 0.2042 -2.3233 1.3047 31 1 -0.4851 0.8400 -0.0004 32 1 2.9001 -3.5803 -0.2702 33 1 1.5980 -4.3873 0.6046 34 1 1.6822 -3.5458 -2.3066 35 1 1.3346 -5.1451 -1.6133 36 1 -0.8131 -4.3807 -2.2483 37 1 -0.4624 -2.7065 -1.7664 38 1 -0.3167 -4.7017 0.4148 39 1 -1.9430 -4.4173 -0.2750 40 1 -2.4575 -3.4604 1.8374 41 1 -5.1728 -1.8976 4.8808 42 1 -4.9495 -3.6647 4.9255 43 1 -7.2062 -2.8840 4.0231 44 1 -6.2938 -3.9652 2.9437 45 1 -8.4147 -2.2380 1.9189 46 1 -8.5114 -0.5416 0.1407 47 1 -6.4867 0.7313 -0.4548 48 1 -4.3761 0.3057 0.7327 49 1 0.3446 -3.0562 2.0992 50 1 0.1041 -1.3261 1.7334 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034340948.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:01 Heat of formation + Delta-G solvation = -36.125837 kcal Electronic energy + Delta-G solvation = -32061.003384 eV Core-core repulsion = 28053.327459 eV Total energy + Delta-G solvation = -4007.675924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.78075 -40.43185 -38.96678 -38.48639 -35.71112 -34.82179 -34.01866 -32.75162 -32.61135 -31.40939 -30.24447 -27.97856 -27.22402 -25.81866 -24.91076 -24.49566 -23.41874 -21.88656 -21.36649 -20.93994 -20.35328 -18.59745 -18.38715 -18.19967 -17.43688 -16.78475 -16.61726 -16.40585 -16.26054 -15.92284 -15.62934 -15.42971 -15.32155 -15.07570 -14.63267 -14.54174 -14.24966 -13.94967 -13.92880 -13.53899 -13.51109 -13.39157 -13.15266 -13.04275 -12.85831 -12.71801 -12.66464 -12.39145 -12.17691 -12.00389 -11.88043 -11.63252 -11.57102 -11.28575 -11.17003 -11.09535 -10.74009 -10.61033 -10.40228 -9.76168 -9.69974 -9.54619 -8.50200 -7.67000 -5.17063 0.28780 0.41564 1.43146 1.46839 1.55289 1.84347 2.40239 2.56231 2.61882 2.82367 3.41123 3.55680 3.67708 3.77355 3.91970 4.03535 4.06397 4.12902 4.21885 4.23112 4.28788 4.32241 4.37621 4.57197 4.61570 4.62984 4.69575 4.75484 4.76713 4.86838 4.88196 4.93709 4.98512 5.05967 5.07389 5.19579 5.30220 5.36612 5.45627 5.45667 5.48982 5.57838 5.58362 5.65877 5.68787 5.78028 5.92374 5.96132 6.03384 6.07245 6.51019 6.90408 7.25591 7.63252 7.97752 8.49424 9.30808 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.003780 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.157102 B = 7406.523066 C = 8242.610217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C -0.033 4.033 3 Si 0.943 3.057 4 H -0.271 1.271 5 H -0.297 1.297 6 H -0.300 1.300 7 C -0.282 4.282 8 H 0.058 0.942 9 N -0.596 5.596 10 C 0.150 3.850 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.109 4.109 14 C 0.135 3.865 15 H 0.089 0.911 16 N -0.708 5.708 17 C 0.508 3.492 18 O -0.531 6.531 19 C 0.129 3.871 20 H 0.090 0.910 21 O -0.378 6.378 22 C 0.050 3.950 23 C -0.110 4.110 24 C -0.075 4.075 25 C -0.122 4.122 26 C -0.111 4.111 27 C -0.138 4.138 28 C -0.126 4.126 29 C -0.128 4.128 30 C 0.172 3.828 31 H 0.246 0.754 32 H 0.028 0.972 33 H 0.048 0.952 34 H 0.034 0.966 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.404 0.596 41 H 0.060 0.940 42 H 0.133 0.867 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.158 0.842 46 H 0.152 0.848 47 H 0.129 0.871 48 H 0.110 0.890 49 H 0.020 0.980 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 -10.619 7.202 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.233 4.233 3 Si 0.773 3.227 4 H -0.196 1.196 5 H -0.225 1.225 6 H -0.227 1.227 7 C -0.413 4.413 8 H 0.076 0.924 9 N -0.318 5.318 10 C 0.022 3.978 11 C -0.176 4.176 12 C -0.139 4.139 13 C -0.147 4.147 14 C 0.030 3.970 15 H 0.106 0.894 16 N -0.360 5.360 17 C 0.292 3.708 18 O -0.407 6.407 19 C 0.067 3.933 20 H 0.107 0.893 21 O -0.297 6.297 22 C -0.026 4.026 23 C -0.146 4.146 24 C -0.075 4.075 25 C -0.140 4.140 26 C -0.129 4.129 27 C -0.156 4.156 28 C -0.144 4.144 29 C -0.129 4.129 30 C 0.047 3.953 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.240 0.760 41 H 0.079 0.921 42 H 0.150 0.850 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.175 0.825 46 H 0.170 0.830 47 H 0.147 0.853 48 H 0.128 0.872 49 H 0.038 0.962 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -17.501 -9.893 6.783 21.217 hybrid contribution 0.514 1.632 -0.189 1.721 sum -16.987 -8.261 6.594 20.007 Atomic orbital electron populations 1.70033 1.04574 1.25157 1.51400 1.25660 0.96068 1.00242 1.01345 0.85607 0.78862 0.82095 0.76154 1.19584 1.22497 1.22717 1.19185 0.92779 0.86290 1.43024 0.92439 1.44113 1.35404 1.02461 1.49828 1.20587 0.96233 0.87243 0.93692 1.22775 0.95199 1.00151 0.99466 1.21183 0.96160 0.99750 0.96761 1.21258 1.00832 0.95847 0.96752 1.20802 0.84570 0.98250 0.93340 0.89352 1.46216 1.31510 1.09794 1.48495 1.20374 0.82798 0.84449 0.83177 1.90862 1.64640 1.34326 1.50884 1.20833 0.91466 0.88884 0.92086 0.89291 1.87987 1.46883 1.35391 1.59427 1.22991 0.83954 1.03908 0.91712 1.21224 1.00437 0.97401 0.95575 1.19847 0.92237 0.96927 0.98486 1.21414 0.97762 0.98620 0.96212 1.21505 0.98591 0.95484 0.97336 1.21320 0.92868 1.01034 1.00352 1.21481 0.99075 0.97975 0.95905 1.19776 0.94762 0.99296 0.99094 1.20165 0.86442 0.98222 0.90452 0.94444 0.95402 0.93375 0.94680 0.90123 0.91821 0.95473 0.90401 0.90706 0.75972 0.92123 0.84963 0.86600 0.88588 0.82464 0.83037 0.85310 0.87191 0.96218 0.93776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.36 7.89 21.65 0.17 -52.18 16 2 C -0.03 -1.92 4.92 84.86 0.42 -1.51 16 3 Si 0.94 47.72 29.59 68.60 2.03 49.75 16 4 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 5 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 6 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 7 C -0.28 -16.00 9.60 84.03 0.81 -15.20 16 8 H 0.06 3.27 7.89 -2.91 -0.02 3.24 16 9 N -0.60 -30.08 2.58 -707.83 -1.83 -31.90 16 10 C 0.15 6.22 5.18 87.60 0.45 6.67 16 11 C -0.14 -4.96 6.40 31.82 0.20 -4.75 16 12 C -0.10 -3.82 5.64 30.25 0.17 -3.65 16 13 C -0.11 -3.85 5.25 29.51 0.15 -3.69 16 14 C 0.13 5.89 1.87 42.75 0.08 5.97 16 15 H 0.09 4.84 4.32 -2.39 -0.01 4.83 16 16 N -0.71 -27.00 4.78 -453.31 -2.17 -29.17 16 17 C 0.51 20.84 6.74 87.66 0.59 21.43 16 18 O -0.53 -26.83 12.71 -3.03 -0.04 -26.87 16 19 C 0.13 4.10 3.22 29.09 0.09 4.20 16 20 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 21 O -0.38 -9.74 9.21 -148.98 -1.37 -11.11 16 22 C 0.05 0.82 6.85 71.97 0.49 1.31 16 23 C -0.11 -1.59 6.00 29.85 0.18 -1.41 16 24 C -0.07 -1.66 5.78 -19.84 -0.11 -1.77 16 25 C -0.12 -2.27 9.67 22.31 0.22 -2.06 16 26 C -0.11 -2.27 10.05 22.23 0.22 -2.04 16 27 C -0.14 -3.69 10.05 22.23 0.22 -3.47 16 28 C -0.13 -4.20 9.07 22.32 0.20 -4.00 16 29 C -0.13 -3.82 5.46 -19.86 -0.11 -3.93 16 30 C 0.17 8.37 4.66 83.58 0.39 8.76 16 31 H 0.25 15.25 8.14 -92.71 -0.75 14.50 16 32 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 33 H 0.05 1.77 6.88 -2.39 -0.02 1.75 16 34 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.03 1.29 6.83 -2.38 -0.02 1.27 16 38 H 0.08 2.50 6.28 -2.39 -0.01 2.49 16 39 H 0.07 2.31 8.03 -2.38 -0.02 2.29 16 40 H 0.40 12.87 7.50 -92.71 -0.70 12.18 16 41 H 0.06 0.96 8.07 -2.39 -0.02 0.94 16 42 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 47 H 0.13 3.11 8.06 -2.91 -0.02 3.08 16 48 H 0.11 4.47 5.88 -2.91 -0.02 4.45 16 49 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 50 H 0.04 2.54 6.28 -2.39 -0.01 2.53 16 Total: -1.00 -72.49 377.87 1.74 -70.75 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.27 Total: 29.87 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.68 Total: 0.87 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -3.83 Total: -113.26 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -1.41 Total: -37.97 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -72.49 1.74 -70.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340948.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.626 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds