Wall clock time and date at job start Wed Apr 1 2020 02:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47372 * 240.00342 * 3 2 1 5 5 H 1.48503 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46565 * 120.00137 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00060 * 188.36275 * 7 2 1 9 9 N 1.36934 * 119.99519 * 8.36645 * 7 2 1 10 10 C 1.44581 * 118.64338 * 214.46257 * 9 7 2 11 11 C 1.54862 * 109.60638 * 270.75161 * 10 9 7 12 12 C 1.47093 * 110.31917 * 288.73429 * 11 10 9 13 13 C 1.52722 * 114.22910 * 62.83185 * 12 11 10 14 14 C 1.50889 * 109.27135 * 274.82880 * 13 12 11 15 15 H 1.08996 * 109.36398 * 331.92588 * 14 13 12 16 16 N 1.46494 * 109.36456 * 212.18030 * 14 13 12 17 17 C 1.34781 * 119.99948 * 154.74425 * 16 14 13 18 18 O 1.21279 * 119.99500 * 4.76410 * 17 16 14 19 19 C 1.50700 * 120.00129 * 184.75562 * 17 16 14 20 20 H 1.08995 * 109.34025 * 236.38087 * 19 17 16 21 21 O 1.42731 * 109.33758 * 356.05351 * 19 17 16 22 22 C 1.43207 * 113.14686 * 171.96476 * 21 19 17 23 23 C 1.52978 * 108.64224 * 289.22785 * 22 21 19 24 24 C 1.51210 * 109.50228 * 49.20889 * 23 22 21 25 25 C 1.38590 * 118.68462 * 163.21445 * 24 23 22 26 26 C 1.38073 * 120.27987 * 179.56762 * 25 24 23 27 27 C 1.38264 * 119.85561 * 0.02942 * 26 25 24 28 28 C 1.38052 * 119.89743 * 0.10298 * 27 26 25 29 29 C 1.37906 * 121.42822 * 342.99361 * 24 23 22 30 30 C 1.47601 * 118.64804 * 34.48513 * 9 7 2 31 31 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.44808 * 30.78884 * 10 9 7 33 33 H 1.08998 * 109.45044 * 150.73516 * 10 9 7 34 34 H 1.08999 * 109.32808 * 48.99363 * 11 10 9 35 35 H 1.08998 * 109.33194 * 168.46543 * 11 10 9 36 36 H 1.09008 * 108.51026 * 184.05310 * 12 11 10 37 37 H 1.08995 * 108.50845 * 301.70036 * 12 11 10 38 38 H 1.09001 * 109.45010 * 154.94186 * 13 12 11 39 39 H 1.08994 * 109.61312 * 34.81942 * 13 12 11 40 40 H 0.97003 * 120.00511 * 334.74612 * 16 14 13 41 41 H 1.08994 * 109.63923 * 49.03208 * 22 21 19 42 42 H 1.09009 * 109.63357 * 169.43845 * 22 21 19 43 43 H 1.09003 * 109.41996 * 169.45741 * 23 22 21 44 44 H 1.08995 * 109.42761 * 289.28601 * 23 22 21 45 45 H 1.08001 * 119.85867 * 359.59252 * 25 24 23 46 46 H 1.07992 * 120.07286 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04726 * 180.12601 * 27 26 25 48 48 H 1.08003 * 119.84608 * 180.02562 * 28 27 26 49 49 H 1.09001 * 108.94957 * 17.16292 * 30 9 7 50 50 H 1.08999 * 108.95112 * 258.52872 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0817 -1.2071 0.1355 9 7 1.3365 -2.3816 -0.1736 10 6 1.8062 -3.5571 0.5250 11 6 2.8517 -4.2962 -0.3461 12 6 2.1963 -4.9387 -1.4956 13 6 1.5225 -3.9635 -2.4586 14 6 0.1322 -3.6529 -1.9611 15 1 -0.2434 -4.4994 -1.3864 16 7 -0.7506 -3.4123 -3.1051 17 6 -2.0775 -3.6169 -2.9871 18 8 -2.5515 -3.9166 -1.9118 19 6 -2.9721 -3.4733 -4.1913 20 1 -3.7503 -2.7407 -3.9775 21 8 -2.1978 -3.0289 -5.3050 22 6 -2.9269 -3.0393 -6.5375 23 6 -3.1542 -4.4922 -6.9590 24 6 -3.7041 -5.2770 -5.7894 25 6 -4.3065 -6.5010 -6.0340 26 6 -4.8119 -7.2492 -4.9894 27 6 -4.7172 -6.7751 -3.6941 28 6 -4.1198 -5.5547 -3.4500 29 6 -3.6128 -4.8019 -4.4980 30 6 0.1610 -2.4006 -1.0661 31 1 -0.4850 0.8401 0.0004 32 1 2.2647 -3.2597 1.4681 33 1 0.9652 -4.2213 0.7238 34 1 3.5917 -3.5813 -0.7059 35 1 3.3506 -5.0557 0.2557 36 1 2.9446 -5.5085 -2.0466 37 1 1.4422 -5.6310 -1.1214 38 1 1.4620 -4.4148 -3.4489 39 1 2.1034 -3.0428 -2.5129 40 1 -0.3802 -3.1056 -3.9476 41 1 -3.8876 -2.5435 -6.3990 42 1 -2.3543 -2.5202 -7.3062 43 1 -3.8623 -4.5228 -7.7872 44 1 -2.2077 -4.9299 -7.2761 45 1 -4.3805 -6.8712 -7.0458 46 1 -5.2802 -8.2027 -5.1837 47 1 -5.1097 -7.3587 -2.8745 48 1 -4.0459 -5.1853 -2.4378 49 1 0.1828 -1.5136 -1.6992 50 1 -0.7443 -2.3784 -0.4595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034340949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:06 Heat of formation + Delta-G solvation = -34.816176 kcal Electronic energy + Delta-G solvation = -31425.207546 eV Core-core repulsion = 27417.588413 eV Total energy + Delta-G solvation = -4007.619133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.82932 -39.09957 -37.74234 -37.47958 -34.33708 -33.45148 -33.20219 -31.84314 -30.72438 -30.22944 -29.32068 -26.48809 -25.82280 -24.21294 -24.03462 -23.08418 -22.40988 -20.64519 -20.14592 -19.78005 -19.15700 -17.45549 -17.25123 -16.63947 -16.28899 -15.75806 -15.46096 -15.38449 -15.10990 -14.65308 -14.55543 -14.07855 -13.89384 -13.71205 -13.58731 -13.26251 -13.10786 -12.86196 -12.61836 -12.57853 -12.37362 -12.09354 -11.99455 -11.92680 -11.38445 -11.27902 -11.07493 -10.91314 -10.84882 -10.67871 -10.37332 -10.23282 -10.15243 -9.91644 -9.90145 -9.72276 -9.57492 -9.40419 -8.85600 -8.71653 -8.49136 -8.31826 -6.46594 -5.71032 -3.25823 1.13938 1.27582 2.89718 3.37537 3.40125 3.45659 3.46231 3.52458 3.70027 4.41486 4.48207 4.53408 4.61059 4.87928 4.92078 4.97220 5.12463 5.19569 5.23009 5.29636 5.32859 5.39935 5.52942 5.55236 5.58395 5.63906 5.69929 5.80235 5.84888 5.97939 5.99423 6.09651 6.26624 6.30711 6.39188 6.41818 6.44496 6.54742 6.67322 6.71243 6.71922 6.76472 6.86704 6.88877 6.99472 7.05150 7.17063 7.44346 7.83204 7.87927 8.01184 8.57146 8.61348 9.31601 9.95546 10.45283 11.34399 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003196 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.299167 B = 8757.541696 C = 9529.568528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.012 3.988 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.264 4.264 8 H 0.061 0.939 9 N -0.585 5.585 10 C 0.155 3.845 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.118 3.882 15 H 0.072 0.928 16 N -0.699 5.699 17 C 0.531 3.469 18 O -0.532 6.532 19 C 0.116 3.884 20 H 0.103 0.897 21 O -0.368 6.368 22 C 0.060 3.940 23 C -0.115 4.115 24 C -0.070 4.070 25 C -0.127 4.127 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.099 4.099 29 C -0.112 4.112 30 C 0.177 3.823 31 H 0.254 0.746 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.404 0.596 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.151 0.849 49 H 0.069 0.931 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 -12.096 -15.239 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.188 4.188 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.395 4.395 8 H 0.079 0.921 9 N -0.307 5.307 10 C 0.027 3.973 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.013 3.987 15 H 0.090 0.910 16 N -0.349 5.349 17 C 0.315 3.685 18 O -0.409 6.409 19 C 0.055 3.945 20 H 0.120 0.880 21 O -0.286 6.286 22 C -0.016 4.016 23 C -0.152 4.152 24 C -0.070 4.070 25 C -0.145 4.145 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.117 4.117 29 C -0.113 4.113 30 C 0.051 3.949 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.168 0.832 49 H 0.088 0.912 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.748 -12.117 -14.434 20.377 hybrid contribution 0.274 0.897 -0.565 1.095 sum -7.473 -11.221 -14.999 20.167 Atomic orbital electron populations 1.70023 1.05221 1.25500 1.53325 1.25286 0.95315 0.98393 0.99780 0.86418 0.78896 0.83535 0.78100 1.20989 1.21682 1.20845 1.19071 0.90455 0.83978 1.45957 0.92122 1.43445 1.32849 1.05475 1.48913 1.20742 0.94193 0.88874 0.93445 1.21504 1.00283 0.99337 0.97679 1.20247 0.99023 0.97562 0.96743 1.21302 0.95879 1.00761 0.97349 1.21841 0.88387 1.01408 0.87111 0.91030 1.46109 1.06468 1.66532 1.15763 1.19728 0.83173 0.77321 0.88254 1.90680 1.74388 1.48882 1.27000 1.21068 0.93776 0.93638 0.85989 0.88004 1.88020 1.38393 1.86289 1.15943 1.22657 0.97343 0.95346 0.86286 1.21235 1.01992 0.95912 0.96057 1.19543 0.98476 0.95460 0.93523 1.20977 0.99892 0.94436 0.99171 1.21153 0.99515 0.99567 0.92996 1.21162 0.99979 0.96347 0.96859 1.21707 0.95301 0.94101 1.00564 1.19723 1.01410 0.96555 0.93564 1.21282 0.89735 0.92785 0.91064 0.93607 0.93563 0.95062 0.92159 0.93524 0.93782 0.93302 0.93114 0.90071 0.76069 0.92302 0.87773 0.89599 0.89522 0.86074 0.86086 0.85830 0.83199 0.91235 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.15 55.49 0.62 -25.82 16 2 C 0.01 0.34 5.01 -17.43 -0.09 0.25 16 3 Si 0.90 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.26 -7.21 9.36 -15.06 -0.14 -7.36 16 8 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 9 N -0.59 -14.66 2.24 -172.09 -0.39 -15.04 16 10 C 0.16 3.35 5.65 -4.08 -0.02 3.32 16 11 C -0.15 -2.65 5.74 -28.58 -0.16 -2.81 16 12 C -0.10 -1.62 5.17 -29.71 -0.15 -1.77 16 13 C -0.11 -2.02 5.07 -27.93 -0.14 -2.16 16 14 C 0.12 2.32 2.24 -68.50 -0.15 2.17 16 15 H 0.07 1.50 6.81 -51.93 -0.35 1.15 16 16 N -0.70 -12.32 4.92 -54.36 -0.27 -12.59 16 17 C 0.53 9.49 6.96 -10.98 -0.08 9.41 16 18 O -0.53 -11.08 14.20 5.56 0.08 -11.00 16 19 C 0.12 1.66 3.23 -29.06 -0.09 1.56 16 20 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 21 O -0.37 -4.67 9.15 -35.23 -0.32 -5.00 16 22 C 0.06 0.54 6.83 37.15 0.25 0.80 16 23 C -0.11 -0.97 6.04 -27.64 -0.17 -1.14 16 24 C -0.07 -0.78 5.79 -104.36 -0.60 -1.39 16 25 C -0.13 -1.27 9.67 -39.51 -0.38 -1.65 16 26 C -0.11 -1.15 10.05 -39.63 -0.40 -1.55 16 27 C -0.13 -1.46 10.05 -39.64 -0.40 -1.86 16 28 C -0.10 -1.38 9.02 -39.50 -0.36 -1.73 16 29 C -0.11 -1.50 5.46 -104.62 -0.57 -2.07 16 30 C 0.18 4.35 4.22 -2.94 -0.01 4.34 16 31 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.05 1.01 7.99 -51.93 -0.41 0.60 16 33 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.05 0.80 7.34 -51.93 -0.38 0.42 16 38 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 39 H 0.08 1.60 7.48 -51.93 -0.39 1.21 16 40 H 0.40 6.39 7.33 -40.82 -0.30 6.09 16 41 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 42 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 48 H 0.15 2.35 5.69 -52.48 -0.30 2.05 16 49 H 0.07 1.88 6.70 -51.93 -0.35 1.53 16 50 H 0.03 0.98 7.96 -51.93 -0.41 0.56 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -31.72 386.80 -11.07 -42.78 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.92 Total: 7.72 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.67 Total: -3.64 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.03 Total: -53.45 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.24 Total: -16.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.72 -11.07 -42.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.968 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds