Wall clock time and date at job start Wed Apr 1 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 120.00061 * 2 1 4 4 H 1.48499 * 109.47372 * 240.00342 * 3 2 1 5 5 H 1.48503 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46565 * 120.00137 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00060 * 188.36275 * 7 2 1 9 9 N 1.36934 * 119.99519 * 8.36645 * 7 2 1 10 10 C 1.44581 * 118.64338 * 214.46257 * 9 7 2 11 11 C 1.54862 * 109.60638 * 270.75161 * 10 9 7 12 12 C 1.47093 * 110.31917 * 288.73429 * 11 10 9 13 13 C 1.52722 * 114.22910 * 62.83185 * 12 11 10 14 14 C 1.50889 * 109.27135 * 274.82880 * 13 12 11 15 15 H 1.08996 * 109.36398 * 331.92588 * 14 13 12 16 16 N 1.46494 * 109.36456 * 212.18030 * 14 13 12 17 17 C 1.34781 * 119.99948 * 154.74425 * 16 14 13 18 18 O 1.21279 * 119.99500 * 4.76410 * 17 16 14 19 19 C 1.50700 * 120.00129 * 184.75562 * 17 16 14 20 20 H 1.08995 * 109.34025 * 236.38087 * 19 17 16 21 21 O 1.42731 * 109.33758 * 356.05351 * 19 17 16 22 22 C 1.43207 * 113.14686 * 171.96476 * 21 19 17 23 23 C 1.52978 * 108.64224 * 289.22785 * 22 21 19 24 24 C 1.51210 * 109.50228 * 49.20889 * 23 22 21 25 25 C 1.38590 * 118.68462 * 163.21445 * 24 23 22 26 26 C 1.38073 * 120.27987 * 179.56762 * 25 24 23 27 27 C 1.38264 * 119.85561 * 0.02942 * 26 25 24 28 28 C 1.38052 * 119.89743 * 0.10298 * 27 26 25 29 29 C 1.37906 * 121.42822 * 342.99361 * 24 23 22 30 30 C 1.47601 * 118.64804 * 34.48513 * 9 7 2 31 31 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.44808 * 30.78884 * 10 9 7 33 33 H 1.08998 * 109.45044 * 150.73516 * 10 9 7 34 34 H 1.08999 * 109.32808 * 48.99363 * 11 10 9 35 35 H 1.08998 * 109.33194 * 168.46543 * 11 10 9 36 36 H 1.09008 * 108.51026 * 184.05310 * 12 11 10 37 37 H 1.08995 * 108.50845 * 301.70036 * 12 11 10 38 38 H 1.09001 * 109.45010 * 154.94186 * 13 12 11 39 39 H 1.08994 * 109.61312 * 34.81942 * 13 12 11 40 40 H 0.97003 * 120.00511 * 334.74612 * 16 14 13 41 41 H 1.08994 * 109.63923 * 49.03208 * 22 21 19 42 42 H 1.09009 * 109.63357 * 169.43845 * 22 21 19 43 43 H 1.09003 * 109.41996 * 169.45741 * 23 22 21 44 44 H 1.08995 * 109.42761 * 289.28601 * 23 22 21 45 45 H 1.08001 * 119.85867 * 359.59252 * 25 24 23 46 46 H 1.07992 * 120.07286 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04726 * 180.12601 * 27 26 25 48 48 H 1.08003 * 119.84608 * 180.02562 * 28 27 26 49 49 H 1.09001 * 108.94957 * 17.16292 * 30 9 7 50 50 H 1.08999 * 108.95112 * 258.52872 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0817 -1.2071 0.1355 9 7 1.3365 -2.3816 -0.1736 10 6 1.8062 -3.5571 0.5250 11 6 2.8517 -4.2962 -0.3461 12 6 2.1963 -4.9387 -1.4956 13 6 1.5225 -3.9635 -2.4586 14 6 0.1322 -3.6529 -1.9611 15 1 -0.2434 -4.4994 -1.3864 16 7 -0.7506 -3.4123 -3.1051 17 6 -2.0775 -3.6169 -2.9871 18 8 -2.5515 -3.9166 -1.9118 19 6 -2.9721 -3.4733 -4.1913 20 1 -3.7503 -2.7407 -3.9775 21 8 -2.1978 -3.0289 -5.3050 22 6 -2.9269 -3.0393 -6.5375 23 6 -3.1542 -4.4922 -6.9590 24 6 -3.7041 -5.2770 -5.7894 25 6 -4.3065 -6.5010 -6.0340 26 6 -4.8119 -7.2492 -4.9894 27 6 -4.7172 -6.7751 -3.6941 28 6 -4.1198 -5.5547 -3.4500 29 6 -3.6128 -4.8019 -4.4980 30 6 0.1610 -2.4006 -1.0661 31 1 -0.4850 0.8401 0.0004 32 1 2.2647 -3.2597 1.4681 33 1 0.9652 -4.2213 0.7238 34 1 3.5917 -3.5813 -0.7059 35 1 3.3506 -5.0557 0.2557 36 1 2.9446 -5.5085 -2.0466 37 1 1.4422 -5.6310 -1.1214 38 1 1.4620 -4.4148 -3.4489 39 1 2.1034 -3.0428 -2.5129 40 1 -0.3802 -3.1056 -3.9476 41 1 -3.8876 -2.5435 -6.3990 42 1 -2.3543 -2.5202 -7.3062 43 1 -3.8623 -4.5228 -7.7872 44 1 -2.2077 -4.9299 -7.2761 45 1 -4.3805 -6.8712 -7.0458 46 1 -5.2802 -8.2027 -5.1837 47 1 -5.1097 -7.3587 -2.8745 48 1 -4.0459 -5.1853 -2.4378 49 1 0.1828 -1.5136 -1.6992 50 1 -0.7443 -2.3784 -0.4595 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034340949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:05 Heat of formation + Delta-G solvation = -53.737074 kcal Electronic energy + Delta-G solvation = -31426.028018 eV Core-core repulsion = 27417.588413 eV Total energy + Delta-G solvation = -4008.439605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.91004 -40.45562 -39.15197 -38.58435 -36.05778 -35.16999 -34.05155 -32.79503 -32.69304 -31.66249 -30.31595 -27.99180 -27.34140 -25.90000 -25.00814 -24.61081 -23.44314 -21.98952 -21.41641 -21.05539 -20.82999 -18.64287 -18.56150 -18.25214 -17.57652 -17.15268 -16.70409 -16.52563 -16.33759 -15.98167 -15.86670 -15.59927 -15.32793 -15.07287 -14.76975 -14.57790 -14.35569 -14.15483 -14.08979 -13.75648 -13.61469 -13.57550 -13.01857 -12.99664 -12.88664 -12.78009 -12.74027 -12.47709 -12.28439 -12.13880 -12.10790 -11.84654 -11.62726 -11.53808 -11.41101 -11.15853 -10.93016 -10.78185 -10.53920 -10.01534 -9.75925 -9.60272 -8.54534 -7.83809 -5.43151 0.25599 0.40748 1.45160 1.46682 1.49396 1.54580 2.12894 2.45535 2.51793 2.78872 3.29389 3.47091 3.59705 3.70351 3.86257 3.90347 3.93339 4.05219 4.07649 4.19394 4.24679 4.28752 4.33495 4.41374 4.45599 4.54836 4.59266 4.62098 4.73831 4.83526 4.85342 4.94474 4.95475 5.04854 5.06341 5.13661 5.17790 5.27647 5.29941 5.38968 5.43834 5.47708 5.53496 5.55773 5.59002 5.62548 5.69706 5.78264 5.86708 6.04173 6.43459 6.57004 7.15642 7.21881 7.91702 8.36602 9.19125 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.003196 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.299167 B = 8757.541696 C = 9529.568528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.269 4.269 8 H 0.067 0.933 9 N -0.599 5.599 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.099 4.099 13 C -0.106 4.106 14 C 0.134 3.866 15 H 0.058 0.942 16 N -0.695 5.695 17 C 0.523 3.477 18 O -0.570 6.570 19 C 0.130 3.870 20 H 0.099 0.901 21 O -0.381 6.381 22 C 0.050 3.950 23 C -0.110 4.110 24 C -0.074 4.074 25 C -0.123 4.123 26 C -0.110 4.110 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.132 4.132 30 C 0.200 3.800 31 H 0.247 0.753 32 H 0.038 0.962 33 H 0.027 0.973 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.414 0.586 41 H 0.064 0.936 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.156 0.844 46 H 0.153 0.847 47 H 0.134 0.866 48 H 0.118 0.882 49 H 0.038 0.962 50 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.342 -14.023 -18.660 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.399 4.399 8 H 0.085 0.915 9 N -0.322 5.322 10 C 0.021 3.979 11 C -0.172 4.172 12 C -0.137 4.137 13 C -0.144 4.144 14 C 0.028 3.972 15 H 0.076 0.924 16 N -0.345 5.345 17 C 0.309 3.691 18 O -0.450 6.450 19 C 0.068 3.932 20 H 0.116 0.884 21 O -0.300 6.300 22 C -0.026 4.026 23 C -0.146 4.146 24 C -0.074 4.074 25 C -0.141 4.141 26 C -0.128 4.128 27 C -0.154 4.154 28 C -0.145 4.145 29 C -0.133 4.133 30 C 0.074 3.926 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.252 0.748 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.135 0.865 44 H 0.113 0.887 45 H 0.174 0.826 46 H 0.170 0.830 47 H 0.152 0.848 48 H 0.136 0.864 49 H 0.056 0.944 50 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -6.575 -14.070 -17.882 23.685 hybrid contribution -0.141 1.437 0.522 1.535 sum -6.716 -12.633 -17.360 22.496 Atomic orbital electron populations 1.70242 1.06917 1.25677 1.55180 1.26089 0.96020 1.01871 1.00108 0.85342 0.77489 0.79014 0.78554 1.19812 1.22344 1.20009 1.19422 0.90887 0.84911 1.44715 0.91541 1.43648 1.32546 1.06181 1.49824 1.20946 0.95115 0.88014 0.93857 1.21317 0.98667 0.99402 0.97800 1.20260 0.99822 0.97288 0.96299 1.21231 0.93418 1.00451 0.99258 1.21424 0.90566 0.98008 0.87164 0.92389 1.46032 1.06478 1.66558 1.15476 1.20477 0.83390 0.76095 0.89130 1.90661 1.75096 1.50230 1.29050 1.20716 0.92485 0.94686 0.85266 0.88392 1.87984 1.38960 1.86318 1.16744 1.23022 0.97909 0.96593 0.85029 1.21307 1.03045 0.94634 0.95644 1.19923 0.97998 0.96259 0.93236 1.21417 0.98329 0.93545 1.00784 1.21544 0.98559 1.00607 0.92046 1.21359 0.99895 0.95609 0.98505 1.21582 0.97595 0.95789 0.99509 1.19704 1.02656 0.96196 0.94758 1.20846 0.87481 0.93947 0.90344 0.94398 0.94383 0.95438 0.93109 0.90412 0.90247 0.93061 0.90027 0.92120 0.74806 0.91792 0.85134 0.86456 0.88676 0.82589 0.82954 0.84768 0.86387 0.94389 1.00387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 11.15 21.65 0.24 -57.93 16 2 C -0.05 -2.59 5.01 84.86 0.43 -2.16 16 3 Si 0.97 45.83 29.56 68.60 2.03 47.86 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.27 -15.06 9.36 84.03 0.79 -14.27 16 8 H 0.07 3.59 7.84 -2.91 -0.02 3.57 16 9 N -0.60 -31.25 2.24 -698.37 -1.56 -32.82 16 10 C 0.15 6.45 5.65 87.37 0.49 6.95 16 11 C -0.13 -4.51 5.74 29.39 0.17 -4.34 16 12 C -0.10 -3.05 5.17 28.67 0.15 -2.90 16 13 C -0.11 -3.60 5.07 29.82 0.15 -3.45 16 14 C 0.13 5.51 2.24 44.63 0.10 5.61 16 15 H 0.06 2.55 6.81 -2.39 -0.02 2.54 16 16 N -0.69 -25.54 4.92 -444.29 -2.18 -27.73 16 17 C 0.52 19.98 6.96 87.66 0.61 20.59 16 18 O -0.57 -26.08 14.20 -3.03 -0.04 -26.12 16 19 C 0.13 3.85 3.23 29.09 0.09 3.95 16 20 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 21 O -0.38 -9.47 9.15 -148.98 -1.36 -10.83 16 22 C 0.05 0.78 6.83 71.97 0.49 1.28 16 23 C -0.11 -1.46 6.04 30.00 0.18 -1.28 16 24 C -0.07 -1.49 5.79 -19.70 -0.11 -1.61 16 25 C -0.12 -2.02 9.67 22.31 0.22 -1.80 16 26 C -0.11 -1.92 10.05 22.24 0.22 -1.70 16 27 C -0.14 -3.12 10.05 22.23 0.22 -2.89 16 28 C -0.13 -3.72 9.02 22.32 0.20 -3.52 16 29 C -0.13 -3.58 5.46 -19.86 -0.11 -3.69 16 30 C 0.20 10.50 4.22 86.49 0.37 10.87 16 31 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 32 H 0.04 1.69 7.99 -2.39 -0.02 1.67 16 33 H 0.03 1.20 8.06 -2.39 -0.02 1.18 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.05 1.58 7.34 -2.39 -0.02 1.57 16 38 H 0.08 2.30 7.94 -2.39 -0.02 2.28 16 39 H 0.06 2.36 7.48 -2.39 -0.02 2.34 16 40 H 0.41 13.28 7.33 -92.71 -0.68 12.60 16 41 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 42 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 47 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 48 H 0.12 4.16 5.69 -2.91 -0.02 4.14 16 49 H 0.04 2.19 6.70 -2.39 -0.02 2.18 16 50 H -0.02 -1.38 7.96 -2.39 -0.02 -1.40 16 Total: -1.00 -75.23 386.80 2.03 -73.19 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 0.26 Total: 28.76 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 4.66 Total: 5.62 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -3.51 Total: -118.48 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.41 Total: -36.95 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.23 2.03 -73.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.457 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds