Wall clock time and date at job start Wed Apr 1 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47503 * 300.00241 * 3 2 1 6 6 H 1.48500 * 109.47106 * 60.00345 * 3 2 1 7 7 C 1.38812 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00051 * 170.19483 * 7 2 1 9 9 N 1.36939 * 120.00243 * 350.20176 * 7 2 1 10 10 C 1.43426 * 120.53825 * 150.37445 * 9 7 2 11 11 C 1.54904 * 116.08246 * 271.54517 * 10 9 7 12 12 C 1.54845 * 110.14002 * 318.64315 * 11 10 9 13 13 C 1.50127 * 110.81307 * 321.13047 * 12 11 10 14 14 C 1.52528 * 105.41790 * 97.68346 * 13 12 11 15 15 H 1.09007 * 108.39968 * 31.74813 * 14 13 12 16 16 N 1.46491 * 108.52093 * 149.35286 * 14 13 12 17 17 C 1.34783 * 120.00061 * 209.72035 * 16 14 13 18 18 O 1.21284 * 119.99635 * 5.01736 * 17 16 14 19 19 C 1.50703 * 120.00142 * 185.02449 * 17 16 14 20 20 H 1.09001 * 109.33475 * 231.43142 * 19 17 16 21 21 O 1.42723 * 109.33731 * 351.10782 * 19 17 16 22 22 C 1.43213 * 113.12891 * 171.97089 * 21 19 17 23 23 C 1.52978 * 108.45903 * 289.27629 * 22 21 19 24 24 C 1.50740 * 109.71157 * 49.24283 * 23 22 21 25 25 C 1.38684 * 118.70445 * 163.21358 * 24 23 22 26 26 C 1.38073 * 120.25298 * 179.75525 * 25 24 23 27 27 C 1.38261 * 119.86523 * 359.96310 * 26 25 24 28 28 C 1.38046 * 119.89637 * 0.08129 * 27 26 25 29 29 C 1.37832 * 121.41194 * 343.01317 * 24 23 22 30 30 C 1.46237 * 114.28035 * 270.59609 * 14 13 12 31 31 H 0.96996 * 119.99848 * 359.97438 * 1 2 3 32 32 H 1.09001 * 108.16268 * 33.26326 * 10 9 7 33 33 H 1.09000 * 108.15722 * 149.83317 * 10 9 7 34 34 H 1.09004 * 109.35585 * 78.84469 * 11 10 9 35 35 H 1.08996 * 109.35935 * 198.43569 * 11 10 9 36 36 H 1.09000 * 109.20563 * 81.47318 * 12 11 10 37 37 H 1.09000 * 109.20601 * 200.82929 * 12 11 10 38 38 H 1.08998 * 110.24722 * 338.71342 * 13 12 11 39 39 H 1.08999 * 110.24739 * 216.65241 * 13 12 11 40 40 H 0.96996 * 120.00383 * 29.72088 * 16 14 13 41 41 H 1.08995 * 109.64018 * 169.59199 * 22 21 19 42 42 H 1.08997 * 109.80847 * 49.06742 * 22 21 19 43 43 H 1.09005 * 109.42120 * 169.29812 * 23 22 21 44 44 H 1.08993 * 109.42603 * 289.18001 * 23 22 21 45 45 H 1.08001 * 119.88150 * 359.72926 * 25 24 23 46 46 H 1.08006 * 120.06260 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.04791 * 180.02562 * 27 26 25 48 48 H 1.08001 * 119.85053 * 179.97438 * 28 27 26 49 49 H 1.08994 * 109.85054 * 177.91508 * 30 14 13 50 50 H 1.08998 * 109.84568 * 298.83545 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0784 -1.2090 -0.1598 9 7 1.3405 -2.3795 0.2008 10 6 1.8173 -3.5986 -0.3855 11 6 1.3031 -3.9149 -1.8121 12 6 -0.2029 -3.5728 -1.9241 13 6 -0.9299 -3.9463 -0.6648 14 6 -1.0337 -2.6558 0.1416 15 1 -1.1068 -1.8201 -0.5545 16 7 -2.2611 -2.7033 0.9398 17 6 -2.9059 -1.5619 1.2531 18 8 -2.5223 -0.5046 0.7993 19 6 -4.1032 -1.5995 2.1675 20 1 -4.9325 -1.0702 1.6981 21 8 -4.4790 -2.9568 2.3986 22 6 -5.4930 -3.0970 3.4001 23 6 -4.8767 -2.7727 4.7622 24 6 -4.1225 -1.4699 4.6817 25 6 -3.7910 -0.8183 5.8601 26 6 -3.0961 0.3743 5.8239 27 6 -2.7289 0.9204 4.6079 28 6 -3.0596 0.2725 3.4347 29 6 -3.7580 -0.9246 3.4694 30 6 0.0953 -2.4152 1.0393 31 1 -0.4850 0.8400 0.0004 32 1 2.9060 -3.5568 -0.4184 33 1 1.5340 -4.4235 0.2683 34 1 1.8628 -3.3240 -2.5371 35 1 1.4496 -4.9743 -2.0223 36 1 -0.3155 -2.5028 -2.0992 37 1 -0.6337 -4.1206 -2.7621 38 1 -0.3629 -4.6935 -0.1095 39 1 -1.9245 -4.3243 -0.9014 40 1 -2.6099 -3.5562 1.2428 41 1 -5.8671 -4.1208 3.4019 42 1 -6.3123 -2.4079 3.1953 43 1 -5.6679 -2.6880 5.5071 44 1 -4.1921 -3.5706 5.0496 45 1 -4.0777 -1.2450 6.8100 46 1 -2.8399 0.8793 6.7435 47 1 -2.1849 1.8529 4.5761 48 1 -2.7727 0.7000 2.4853 49 1 -0.0346 -1.4610 1.5498 50 1 0.1640 -3.2199 1.7713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034340950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:09 Heat of formation + Delta-G solvation = -17.650344 kcal Electronic energy + Delta-G solvation = -32344.068080 eV Core-core repulsion = 28337.193313 eV Total energy + Delta-G solvation = -4006.874767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.58459 -38.90525 -37.56770 -37.18186 -33.92933 -33.07023 -32.99517 -31.60836 -30.67075 -29.91453 -29.06680 -26.29979 -25.79431 -24.07586 -23.90822 -22.85662 -22.19488 -20.40637 -19.95475 -19.54233 -18.69841 -17.21295 -17.08003 -16.50584 -16.11717 -15.54074 -15.20512 -15.06243 -14.75286 -14.42933 -14.21025 -14.09731 -13.69868 -13.54200 -13.32228 -13.09016 -13.04470 -12.60270 -12.41147 -12.19690 -12.06936 -11.88788 -11.76144 -11.69553 -11.20832 -11.11170 -11.09662 -10.72346 -10.67608 -10.57607 -10.13570 -10.05578 -9.78935 -9.74391 -9.65819 -9.43596 -9.29644 -9.06316 -8.60431 -8.48122 -8.33833 -8.01434 -6.45838 -5.53243 -3.08286 1.38119 1.51843 3.33391 3.46871 3.55027 3.56191 3.59563 3.85815 4.00834 4.59371 4.64193 4.72602 4.77037 5.04176 5.09902 5.20545 5.35650 5.35959 5.42750 5.46466 5.53423 5.66074 5.69299 5.73025 5.76479 5.79092 5.88476 5.93700 6.08156 6.23011 6.23808 6.31939 6.42509 6.52300 6.53227 6.61318 6.64643 6.71157 6.73368 6.93090 6.96501 7.04217 7.07933 7.13393 7.23169 7.28017 7.44858 7.74718 7.80411 7.99614 8.45777 8.64698 9.09990 9.39106 10.00237 10.55803 11.50098 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004558 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.906210 B = 6141.719654 C = 7801.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.012 3.988 3 Si 0.893 3.107 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.581 5.581 10 C 0.158 3.842 11 C -0.143 4.143 12 C -0.104 4.104 13 C -0.123 4.123 14 C 0.126 3.874 15 H 0.133 0.867 16 N -0.716 5.716 17 C 0.516 3.484 18 O -0.483 6.483 19 C 0.113 3.887 20 H 0.094 0.906 21 O -0.369 6.369 22 C 0.061 3.939 23 C -0.114 4.114 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.091 4.091 29 C -0.110 4.110 30 C 0.162 3.838 31 H 0.261 0.739 32 H 0.030 0.970 33 H 0.024 0.976 34 H 0.050 0.950 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.390 0.610 41 H 0.100 0.900 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.151 0.849 49 H 0.094 0.906 50 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.337 -6.633 8.685 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.190 4.190 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.401 4.401 8 H 0.080 0.920 9 N -0.302 5.302 10 C 0.029 3.971 11 C -0.184 4.184 12 C -0.142 4.142 13 C -0.161 4.161 14 C 0.023 3.977 15 H 0.151 0.849 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.357 6.357 19 C 0.052 3.948 20 H 0.111 0.889 21 O -0.288 6.288 22 C -0.016 4.016 23 C -0.151 4.151 24 C -0.073 4.073 25 C -0.147 4.147 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.109 4.109 29 C -0.111 4.111 30 C 0.038 3.962 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.223 0.777 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.168 0.832 49 H 0.112 0.888 50 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -12.038 -5.837 8.264 15.725 hybrid contribution 0.128 0.684 0.364 0.786 sum -11.910 -5.152 8.628 15.583 Atomic orbital electron populations 1.69770 1.03708 1.25869 1.51421 1.25194 0.95579 0.97746 1.00450 0.86385 0.79222 0.84991 0.77012 1.20710 1.21925 1.21911 1.19058 0.90572 0.83796 1.46677 0.91970 1.43934 1.28387 1.04244 1.53671 1.20414 0.96434 0.89163 0.91068 1.22891 0.95981 0.98141 1.01436 1.21279 0.95167 1.02207 0.95530 1.21352 0.99025 0.97948 0.97747 1.21264 0.82716 0.98673 0.95046 0.84948 1.46375 1.27264 1.08111 1.55021 1.19682 0.83317 0.85587 0.81612 1.90873 1.64786 1.28992 1.51012 1.21266 0.97205 0.83351 0.92960 0.88878 1.88015 1.57822 1.24601 1.58341 1.22612 0.89935 1.02314 0.86735 1.21121 0.99845 0.95319 0.98806 1.19398 0.99292 0.96165 0.92471 1.20950 1.00608 0.96053 0.97106 1.21120 0.98340 0.95979 0.97876 1.21159 1.00158 1.00430 0.92372 1.21662 0.94833 0.93980 1.00396 1.19701 1.01130 0.96636 0.93605 1.20370 0.84750 0.99838 0.91278 0.92792 0.95173 0.95750 0.93093 0.94049 0.90714 0.94607 0.92218 0.92859 0.77660 0.88148 0.92591 0.89913 0.89649 0.86307 0.86274 0.85958 0.83192 0.88757 0.98249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.14 7.43 55.49 0.41 -23.73 16 2 C 0.01 0.32 5.10 -17.43 -0.09 0.23 16 3 Si 0.89 22.13 29.56 -169.99 -5.03 17.11 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 7 C -0.27 -7.43 9.61 -15.06 -0.14 -7.58 16 8 H 0.06 1.72 7.85 -52.49 -0.41 1.31 16 9 N -0.58 -14.44 2.59 -175.08 -0.45 -14.89 16 10 C 0.16 3.38 5.17 -4.66 -0.02 3.36 16 11 C -0.14 -2.75 6.41 -24.75 -0.16 -2.91 16 12 C -0.10 -2.01 5.65 -27.19 -0.15 -2.16 16 13 C -0.12 -2.26 5.25 -28.40 -0.15 -2.41 16 14 C 0.13 2.70 1.84 -71.39 -0.13 2.56 16 15 H 0.13 3.40 4.34 -51.93 -0.23 3.18 16 16 N -0.72 -13.40 4.82 -57.21 -0.28 -13.67 16 17 C 0.52 9.97 6.79 -10.98 -0.07 9.89 16 18 O -0.48 -11.10 12.40 5.55 0.07 -11.03 16 19 C 0.11 1.75 3.22 -29.06 -0.09 1.66 16 20 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 21 O -0.37 -4.95 9.17 -35.23 -0.32 -5.27 16 22 C 0.06 0.59 6.84 37.15 0.25 0.85 16 23 C -0.11 -1.13 6.01 -27.87 -0.17 -1.29 16 24 C -0.07 -0.97 5.78 -104.59 -0.60 -1.57 16 25 C -0.13 -1.59 9.68 -39.48 -0.38 -1.97 16 26 C -0.12 -1.48 10.05 -39.63 -0.40 -1.88 16 27 C -0.12 -1.84 10.05 -39.64 -0.40 -2.24 16 28 C -0.09 -1.54 9.06 -39.50 -0.36 -1.90 16 29 C -0.11 -1.71 5.45 -104.64 -0.57 -2.28 16 30 C 0.16 3.87 4.65 -5.20 -0.02 3.85 16 31 H 0.26 7.42 8.06 -40.82 -0.33 7.10 16 32 H 0.03 0.64 8.00 -51.93 -0.42 0.23 16 33 H 0.02 0.48 6.89 -51.93 -0.36 0.13 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.72 6.82 -51.93 -0.35 1.37 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 39 H 0.05 0.88 8.04 -51.93 -0.42 0.47 16 40 H 0.39 6.39 7.42 -40.82 -0.30 6.09 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 47 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 48 H 0.15 2.91 5.84 -52.49 -0.31 2.60 16 49 H 0.09 2.60 6.21 -51.93 -0.32 2.28 16 50 H 0.00 -0.01 8.13 -51.93 -0.42 -0.43 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -30.00 377.03 -11.22 -41.22 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -7.63 Total: 10.39 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.67 Total: -5.80 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.32 Total: -52.29 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.25 Total: -16.30 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.00 -11.22 -41.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.569 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds