Wall clock time and date at job start Wed Apr 1 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47372 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47503 * 300.00241 * 3 2 1 6 6 H 1.48500 * 109.47106 * 60.00345 * 3 2 1 7 7 C 1.38812 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00051 * 170.19483 * 7 2 1 9 9 N 1.36939 * 120.00243 * 350.20176 * 7 2 1 10 10 C 1.43426 * 120.53825 * 150.37445 * 9 7 2 11 11 C 1.54904 * 116.08246 * 271.54517 * 10 9 7 12 12 C 1.54845 * 110.14002 * 318.64315 * 11 10 9 13 13 C 1.50127 * 110.81307 * 321.13047 * 12 11 10 14 14 C 1.52528 * 105.41790 * 97.68346 * 13 12 11 15 15 H 1.09007 * 108.39968 * 31.74813 * 14 13 12 16 16 N 1.46491 * 108.52093 * 149.35286 * 14 13 12 17 17 C 1.34783 * 120.00061 * 209.72035 * 16 14 13 18 18 O 1.21284 * 119.99635 * 5.01736 * 17 16 14 19 19 C 1.50703 * 120.00142 * 185.02449 * 17 16 14 20 20 H 1.09001 * 109.33475 * 231.43142 * 19 17 16 21 21 O 1.42723 * 109.33731 * 351.10782 * 19 17 16 22 22 C 1.43213 * 113.12891 * 171.97089 * 21 19 17 23 23 C 1.52978 * 108.45903 * 289.27629 * 22 21 19 24 24 C 1.50740 * 109.71157 * 49.24283 * 23 22 21 25 25 C 1.38684 * 118.70445 * 163.21358 * 24 23 22 26 26 C 1.38073 * 120.25298 * 179.75525 * 25 24 23 27 27 C 1.38261 * 119.86523 * 359.96310 * 26 25 24 28 28 C 1.38046 * 119.89637 * 0.08129 * 27 26 25 29 29 C 1.37832 * 121.41194 * 343.01317 * 24 23 22 30 30 C 1.46237 * 114.28035 * 270.59609 * 14 13 12 31 31 H 0.96996 * 119.99848 * 359.97438 * 1 2 3 32 32 H 1.09001 * 108.16268 * 33.26326 * 10 9 7 33 33 H 1.09000 * 108.15722 * 149.83317 * 10 9 7 34 34 H 1.09004 * 109.35585 * 78.84469 * 11 10 9 35 35 H 1.08996 * 109.35935 * 198.43569 * 11 10 9 36 36 H 1.09000 * 109.20563 * 81.47318 * 12 11 10 37 37 H 1.09000 * 109.20601 * 200.82929 * 12 11 10 38 38 H 1.08998 * 110.24722 * 338.71342 * 13 12 11 39 39 H 1.08999 * 110.24739 * 216.65241 * 13 12 11 40 40 H 0.96996 * 120.00383 * 29.72088 * 16 14 13 41 41 H 1.08995 * 109.64018 * 169.59199 * 22 21 19 42 42 H 1.08997 * 109.80847 * 49.06742 * 22 21 19 43 43 H 1.09005 * 109.42120 * 169.29812 * 23 22 21 44 44 H 1.08993 * 109.42603 * 289.18001 * 23 22 21 45 45 H 1.08001 * 119.88150 * 359.72926 * 25 24 23 46 46 H 1.08006 * 120.06260 * 179.97438 * 26 25 24 47 47 H 1.08000 * 120.04791 * 180.02562 * 27 26 25 48 48 H 1.08001 * 119.85053 * 179.97438 * 28 27 26 49 49 H 1.08994 * 109.85054 * 177.91508 * 30 14 13 50 50 H 1.08998 * 109.84568 * 298.83545 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0784 -1.2090 -0.1598 9 7 1.3405 -2.3795 0.2008 10 6 1.8173 -3.5986 -0.3855 11 6 1.3031 -3.9149 -1.8121 12 6 -0.2029 -3.5728 -1.9241 13 6 -0.9299 -3.9463 -0.6648 14 6 -1.0337 -2.6558 0.1416 15 1 -1.1068 -1.8201 -0.5545 16 7 -2.2611 -2.7033 0.9398 17 6 -2.9059 -1.5619 1.2531 18 8 -2.5223 -0.5046 0.7993 19 6 -4.1032 -1.5995 2.1675 20 1 -4.9325 -1.0702 1.6981 21 8 -4.4790 -2.9568 2.3986 22 6 -5.4930 -3.0970 3.4001 23 6 -4.8767 -2.7727 4.7622 24 6 -4.1225 -1.4699 4.6817 25 6 -3.7910 -0.8183 5.8601 26 6 -3.0961 0.3743 5.8239 27 6 -2.7289 0.9204 4.6079 28 6 -3.0596 0.2725 3.4347 29 6 -3.7580 -0.9246 3.4694 30 6 0.0953 -2.4152 1.0393 31 1 -0.4850 0.8400 0.0004 32 1 2.9060 -3.5568 -0.4184 33 1 1.5340 -4.4235 0.2683 34 1 1.8628 -3.3240 -2.5371 35 1 1.4496 -4.9743 -2.0223 36 1 -0.3155 -2.5028 -2.0992 37 1 -0.6337 -4.1206 -2.7621 38 1 -0.3629 -4.6935 -0.1095 39 1 -1.9245 -4.3243 -0.9014 40 1 -2.6099 -3.5562 1.2428 41 1 -5.8671 -4.1208 3.4019 42 1 -6.3123 -2.4079 3.1953 43 1 -5.6679 -2.6880 5.5071 44 1 -4.1921 -3.5706 5.0496 45 1 -4.0777 -1.2450 6.8100 46 1 -2.8399 0.8793 6.7435 47 1 -2.1849 1.8529 4.5761 48 1 -2.7727 0.7000 2.4853 49 1 -0.0346 -1.4610 1.5498 50 1 0.1640 -3.2199 1.7713 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034340950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:08 Heat of formation + Delta-G solvation = -35.117812 kcal Electronic energy + Delta-G solvation = -32344.825526 eV Core-core repulsion = 28337.193313 eV Total energy + Delta-G solvation = -4007.632213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76134 -40.40690 -38.94798 -38.46654 -35.69394 -34.80401 -34.00718 -32.74059 -32.59099 -31.40691 -30.22494 -27.98370 -27.20207 -25.78548 -24.90964 -24.48734 -23.41497 -21.86392 -21.35764 -20.93452 -20.33914 -18.60136 -18.39332 -18.18044 -17.34935 -16.83520 -16.62101 -16.39942 -16.23677 -15.97736 -15.61048 -15.41945 -15.23269 -15.08555 -14.55553 -14.50085 -14.33256 -13.93962 -13.90288 -13.53838 -13.46251 -13.39074 -13.10473 -13.03764 -12.84699 -12.71487 -12.66621 -12.38073 -12.16893 -11.99215 -11.91116 -11.63452 -11.56997 -11.26935 -11.18240 -11.07725 -10.72714 -10.55284 -10.39379 -9.76399 -9.66769 -9.55154 -8.43882 -7.63962 -5.20688 0.28963 0.41946 1.42494 1.45419 1.53789 1.87360 2.43071 2.55953 2.63238 2.82213 3.43751 3.57156 3.68268 3.78166 3.93015 4.05668 4.10080 4.13599 4.21061 4.23852 4.29683 4.32464 4.38828 4.57187 4.61745 4.64652 4.70936 4.75707 4.77773 4.87995 4.89320 4.95359 4.99325 5.06461 5.07897 5.19957 5.30460 5.39393 5.46386 5.47945 5.48974 5.57424 5.59162 5.66989 5.70034 5.80044 5.93561 5.99636 6.04955 6.08340 6.54077 6.93318 7.27542 7.66859 7.97608 8.50227 9.32602 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.004558 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.906210 B = 6141.719654 C = 7801.531799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C -0.034 4.034 3 Si 0.945 3.055 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.300 1.300 7 C -0.281 4.281 8 H 0.056 0.944 9 N -0.596 5.596 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.100 4.100 13 C -0.110 4.110 14 C 0.137 3.863 15 H 0.089 0.911 16 N -0.708 5.708 17 C 0.507 3.493 18 O -0.529 6.529 19 C 0.130 3.870 20 H 0.097 0.903 21 O -0.377 6.377 22 C 0.052 3.948 23 C -0.110 4.110 24 C -0.074 4.074 25 C -0.125 4.125 26 C -0.112 4.112 27 C -0.143 4.143 28 C -0.122 4.122 29 C -0.129 4.129 30 C 0.174 3.826 31 H 0.246 0.754 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.404 0.596 41 H 0.134 0.866 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.158 0.842 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.110 0.890 49 H 0.048 0.952 50 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.827 -9.845 10.618 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.234 4.234 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.227 1.227 7 C -0.412 4.412 8 H 0.073 0.927 9 N -0.319 5.319 10 C 0.023 3.977 11 C -0.176 4.176 12 C -0.138 4.138 13 C -0.148 4.148 14 C 0.033 3.967 15 H 0.106 0.894 16 N -0.361 5.361 17 C 0.291 3.709 18 O -0.404 6.404 19 C 0.069 3.931 20 H 0.115 0.885 21 O -0.296 6.296 22 C -0.024 4.024 23 C -0.147 4.147 24 C -0.074 4.074 25 C -0.142 4.142 26 C -0.130 4.130 27 C -0.161 4.161 28 C -0.140 4.140 29 C -0.129 4.129 30 C 0.049 3.951 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.240 0.760 41 H 0.152 0.848 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.111 0.889 45 H 0.176 0.824 46 H 0.167 0.833 47 H 0.139 0.861 48 H 0.128 0.872 49 H 0.067 0.933 50 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -13.536 -9.100 10.202 19.239 hybrid contribution 0.589 1.652 -0.156 1.761 sum -12.948 -7.448 10.046 18.001 Atomic orbital electron populations 1.70011 1.04262 1.24991 1.51735 1.25787 0.96351 1.00113 1.01104 0.85566 0.78700 0.82048 0.76168 1.19701 1.22392 1.22708 1.19171 0.90494 0.85118 1.46414 0.92651 1.44045 1.28667 1.04619 1.54543 1.20566 0.96224 0.88142 0.92734 1.22797 0.95390 1.00214 0.99181 1.21204 0.95776 0.99629 0.97173 1.21277 1.00576 0.96336 0.96634 1.20784 0.82821 0.98995 0.94131 0.89371 1.46213 1.26444 1.08804 1.54639 1.20391 0.84182 0.84883 0.81467 1.90857 1.66389 1.30565 1.52635 1.20834 0.95286 0.84795 0.92211 0.88520 1.87983 1.59152 1.22682 1.59812 1.22993 0.89146 1.04576 0.85651 1.21234 1.00513 0.93214 0.99749 1.19867 0.98603 0.97396 0.91578 1.21437 0.99104 0.95310 0.98361 1.21476 0.97431 0.96346 0.97771 1.21286 1.01015 1.00841 0.92973 1.21483 0.97263 0.95712 0.99553 1.19770 1.02044 0.96373 0.94755 1.20143 0.85688 0.97619 0.91609 0.94411 0.95588 0.93712 0.94618 0.90114 0.95386 0.91677 0.90705 0.90360 0.75968 0.84836 0.91693 0.86503 0.88928 0.82426 0.83301 0.86102 0.87156 0.93318 0.97259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.81 7.43 21.65 0.16 -51.65 16 2 C -0.03 -1.95 5.10 84.86 0.43 -1.51 16 3 Si 0.94 47.75 29.56 68.60 2.03 49.77 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 6 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 7 C -0.28 -15.98 9.61 84.03 0.81 -15.17 16 8 H 0.06 3.16 7.85 -2.91 -0.02 3.14 16 9 N -0.60 -30.30 2.59 -707.85 -1.83 -32.12 16 10 C 0.15 6.31 5.17 87.60 0.45 6.77 16 11 C -0.14 -4.95 6.41 31.87 0.20 -4.74 16 12 C -0.10 -3.75 5.65 30.30 0.17 -3.58 16 13 C -0.11 -3.87 5.25 29.51 0.16 -3.72 16 14 C 0.14 5.99 1.84 42.75 0.08 6.07 16 15 H 0.09 4.80 4.34 -2.38 -0.01 4.79 16 16 N -0.71 -26.95 4.82 -453.31 -2.19 -29.13 16 17 C 0.51 20.64 6.79 87.66 0.60 21.24 16 18 O -0.53 -26.50 12.40 -3.04 -0.04 -26.54 16 19 C 0.13 4.09 3.22 29.09 0.09 4.19 16 20 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 21 O -0.38 -9.42 9.17 -148.98 -1.37 -10.79 16 22 C 0.05 0.82 6.84 71.97 0.49 1.32 16 23 C -0.11 -1.72 6.01 29.85 0.18 -1.54 16 24 C -0.07 -1.80 5.78 -19.84 -0.11 -1.92 16 25 C -0.12 -2.67 9.68 22.34 0.22 -2.45 16 26 C -0.11 -2.72 10.05 22.24 0.22 -2.50 16 27 C -0.14 -4.50 10.05 22.23 0.22 -4.27 16 28 C -0.12 -4.48 9.06 22.32 0.20 -4.28 16 29 C -0.13 -4.07 5.45 -19.88 -0.11 -4.18 16 30 C 0.17 8.57 4.65 83.58 0.39 8.96 16 31 H 0.25 15.16 8.06 -92.71 -0.75 14.41 16 32 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 33 H 0.04 1.68 6.89 -2.39 -0.02 1.66 16 34 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.03 1.31 6.82 -2.39 -0.02 1.30 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.43 6.28 -2.39 -0.02 2.41 16 39 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 40 H 0.40 12.82 7.42 -92.71 -0.69 12.13 16 41 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 43 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 46 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 47 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 48 H 0.11 4.89 5.84 -2.91 -0.02 4.87 16 49 H 0.05 2.85 6.21 -2.39 -0.01 2.83 16 50 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 Total: -1.00 -72.10 377.03 1.75 -70.35 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.29 Total: 31.44 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 4.69 Total: -1.33 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.86 Total: -112.91 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -1.40 Total: -37.33 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -72.10 1.75 -70.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034340950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.234 kcal (2) G-P(sol) polarization free energy of solvation -72.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds