Wall clock time and date at job start Wed Apr 1 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00514 * 3 2 1 5 5 H 1.48500 * 109.46956 * 30.00322 * 3 2 1 6 6 H 1.48495 * 109.47300 * 149.99964 * 3 2 1 7 7 C 1.38809 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 190.37197 * 7 2 1 9 9 N 1.36937 * 119.99949 * 10.36853 * 7 2 1 10 10 C 1.44585 * 118.64224 * 210.52126 * 9 7 2 11 11 C 1.54863 * 109.58116 * 270.71834 * 10 9 7 12 12 C 1.47096 * 110.31902 * 288.74347 * 11 10 9 13 13 C 1.52566 * 114.32525 * 62.80431 * 12 11 10 14 14 C 1.50887 * 109.36135 * 274.98743 * 13 12 11 15 15 H 1.09003 * 109.36237 * 331.69612 * 14 13 12 16 16 N 1.46501 * 109.36735 * 211.95123 * 14 13 12 17 17 C 1.34776 * 120.00032 * 154.99729 * 16 14 13 18 18 O 1.21280 * 119.99861 * 4.83073 * 17 16 14 19 19 C 1.50694 * 119.99937 * 184.83379 * 17 16 14 20 20 H 1.08999 * 109.43553 * 24.47081 * 19 17 16 21 21 C 1.53071 * 109.43573 * 144.34235 * 19 17 16 22 22 C 1.53409 * 108.30753 * 168.21255 * 21 19 17 23 23 O 1.42834 * 108.35953 * 295.25868 * 22 21 19 24 24 C 1.35846 * 117.84905 * 49.21477 * 23 22 21 25 25 C 1.39145 * 118.49139 * 162.91469 * 24 23 22 26 26 C 1.37967 * 120.21304 * 179.76991 * 25 24 23 27 27 C 1.38290 * 119.95567 * 359.97438 * 26 25 24 28 28 C 1.38099 * 119.98734 * 0.07281 * 27 26 25 29 29 C 1.38376 * 121.80692 * 342.82079 * 24 23 22 30 30 C 1.47575 * 118.62640 * 30.48122 * 9 7 2 31 31 H 0.96996 * 120.00603 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.44692 * 150.68643 * 10 9 7 33 33 H 1.08998 * 109.44737 * 30.74327 * 10 9 7 34 34 H 1.08996 * 109.32944 * 49.00190 * 11 10 9 35 35 H 1.09004 * 109.32755 * 168.65608 * 11 10 9 36 36 H 1.08997 * 108.51160 * 184.05527 * 12 11 10 37 37 H 1.08998 * 108.51253 * 301.54634 * 12 11 10 38 38 H 1.09001 * 109.49107 * 34.94946 * 13 12 11 39 39 H 1.09002 * 109.49174 * 155.01722 * 13 12 11 40 40 H 0.97002 * 119.99894 * 334.99830 * 16 14 13 41 41 H 1.08998 * 109.69478 * 287.91794 * 21 19 17 42 42 H 1.08999 * 109.70082 * 48.50805 * 21 19 17 43 43 H 1.08995 * 109.68770 * 175.53862 * 22 21 19 44 44 H 1.08999 * 109.71284 * 54.99040 * 22 21 19 45 45 H 1.07997 * 119.89709 * 359.75485 * 25 24 23 46 46 H 1.07999 * 120.02488 * 180.02562 * 26 25 24 47 47 H 1.08006 * 120.00736 * 180.09259 * 27 26 25 48 48 H 1.08007 * 119.84517 * 179.97438 * 28 27 26 49 49 H 1.09002 * 108.94426 * 17.19400 * 30 9 7 50 50 H 1.09003 * 108.89283 * 258.51167 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0771 -1.2097 0.1679 9 7 1.3424 -2.3782 -0.2145 10 6 1.8429 -3.5828 0.4092 11 6 2.8685 -4.2655 -0.5291 12 6 2.1849 -4.8551 -1.6904 13 6 1.4735 -3.8418 -2.5820 14 6 0.0967 -3.5683 -2.0286 15 1 -0.2565 -4.4465 -1.4880 16 7 -0.8212 -3.2754 -3.1322 17 6 -2.1433 -3.4914 -2.9845 18 8 -2.5838 -3.8445 -1.9111 19 6 -3.0741 -3.2942 -4.1530 20 1 -2.5180 -3.4102 -5.0833 21 6 -4.1922 -4.3381 -4.0954 22 6 -5.2759 -3.9397 -5.1055 23 8 -5.8511 -2.7022 -4.6837 24 6 -5.0074 -1.6875 -4.3612 25 6 -5.5173 -0.3943 -4.3007 26 6 -4.6931 0.6623 -3.9720 27 6 -3.3559 0.4366 -3.7012 28 6 -2.8463 -0.8455 -3.7613 29 6 -3.6682 -1.9098 -4.0930 30 6 0.1411 -2.3634 -1.0715 31 1 -0.4851 0.8400 0.0004 32 1 1.0140 -4.2648 0.5985 33 1 2.3267 -3.3290 1.3524 34 1 3.5911 -3.5255 -0.8731 35 1 3.3896 -5.0518 0.0172 36 1 2.9214 -5.3881 -2.2917 37 1 1.4503 -5.5755 -1.3306 38 1 2.0460 -2.9146 -2.6074 39 1 1.3865 -4.2436 -3.5915 40 1 -0.4773 -2.9261 -3.9693 41 1 -3.7926 -5.3189 -4.3529 42 1 -4.6175 -4.3659 -3.0922 43 1 -6.0464 -4.7099 -5.1403 44 1 -4.8314 -3.8201 -6.0936 45 1 -6.5614 -0.2168 -4.5119 46 1 -5.0921 1.6648 -3.9255 47 1 -2.7103 1.2629 -3.4424 48 1 -1.8015 -1.0191 -3.5497 49 1 0.1364 -1.4448 -1.6583 50 1 -0.7452 -2.3823 -0.4372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034446638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:07 Heat of formation + Delta-G solvation = -31.346541 kcal Electronic energy + Delta-G solvation = -31744.068874 eV Core-core repulsion = 27736.600196 eV Total energy + Delta-G solvation = -4007.468679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.01339 -39.30706 -37.65823 -37.44316 -34.42088 -34.16021 -33.52386 -30.82722 -30.67892 -30.13248 -29.93905 -26.56622 -25.85800 -24.27486 -23.81680 -23.09418 -22.39768 -20.75741 -20.14294 -19.46217 -19.23981 -17.92203 -16.83454 -16.75604 -16.54931 -16.06140 -15.69112 -15.28377 -14.95431 -14.48268 -14.21693 -14.11341 -13.90784 -13.64460 -13.48006 -13.40581 -13.24971 -13.15334 -12.63948 -12.43845 -12.41221 -12.05310 -11.90505 -11.48563 -11.33986 -11.16252 -11.05464 -10.94931 -10.90932 -10.73281 -10.62133 -10.42161 -10.25230 -10.17387 -9.95097 -9.79093 -9.56476 -9.42753 -8.69878 -8.56262 -8.37394 -8.09815 -6.57076 -5.74210 -3.25159 1.34693 1.52744 2.93425 3.22313 3.35337 3.42728 3.44214 3.46235 3.87456 4.45230 4.50118 4.60182 4.64954 4.86795 5.02811 5.13508 5.14764 5.22263 5.26634 5.33762 5.39631 5.47263 5.48111 5.51681 5.58561 5.63245 5.70703 5.82907 5.92074 6.02312 6.03118 6.08532 6.20564 6.32854 6.34850 6.48554 6.52271 6.61368 6.65319 6.66444 6.67661 6.79319 6.83628 6.91995 6.97733 7.11167 7.40043 7.43269 7.78386 7.84829 7.91441 8.51056 8.59082 9.26929 9.92047 10.39303 11.31211 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.004111 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.712048 B = 6809.706251 C = 8841.528757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.009 3.991 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.587 5.587 10 C 0.155 3.845 11 C -0.147 4.147 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.071 0.929 16 N -0.718 5.718 17 C 0.523 3.477 18 O -0.528 6.528 19 C -0.062 4.062 20 H 0.097 0.903 21 C -0.147 4.147 22 C 0.065 3.935 23 O -0.317 6.317 24 C 0.136 3.864 25 C -0.154 4.154 26 C -0.085 4.085 27 C -0.142 4.142 28 C -0.071 4.071 29 C -0.151 4.151 30 C 0.177 3.823 31 H 0.253 0.747 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.394 0.606 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.075 0.925 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -6.714 -13.701 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.027 3.973 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.089 0.911 16 N -0.369 5.369 17 C 0.307 3.693 18 O -0.403 6.403 19 C -0.083 4.083 20 H 0.115 0.885 21 C -0.185 4.185 22 C -0.010 4.010 23 O -0.231 6.231 24 C 0.091 3.909 25 C -0.173 4.173 26 C -0.103 4.103 27 C -0.160 4.160 28 C -0.089 4.089 29 C -0.152 4.152 30 C 0.051 3.949 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.228 0.772 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.082 0.918 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.093 0.907 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.301 -6.872 -12.880 16.322 hybrid contribution 0.944 1.015 -0.396 1.442 sum -6.357 -5.858 -13.276 15.842 Atomic orbital electron populations 1.70054 1.05057 1.25328 1.53719 1.25172 0.95306 0.98244 1.00288 0.86352 0.79173 0.83980 0.77591 1.21524 1.21735 1.20442 1.19173 0.90952 0.84214 1.44844 0.91853 1.43500 1.30667 1.03850 1.52812 1.20737 0.94216 0.88650 0.93733 1.21505 1.00091 0.99474 0.97722 1.20214 0.98886 0.97507 0.96977 1.21279 0.95896 1.00839 0.97288 1.21818 0.87626 1.01229 0.87966 0.91082 1.46272 1.06647 1.66429 1.17540 1.20080 0.82681 0.77331 0.89186 1.90711 1.75966 1.46318 1.27312 1.20149 0.96438 0.93248 0.98472 0.88528 1.22158 0.95631 0.98332 1.02334 1.22953 0.97044 0.84335 0.96677 1.85973 1.34479 1.21033 1.81627 1.18589 0.88220 0.87804 0.96253 1.20518 1.00727 0.89619 1.06394 1.20952 0.93515 0.98377 0.97488 1.21076 0.95707 0.97206 1.02050 1.21098 1.00060 0.91999 0.95785 1.19327 0.93509 0.94419 1.07931 1.21300 0.88987 0.93637 0.90966 0.93656 0.95039 0.93581 0.92105 0.93487 0.93769 0.93310 0.90090 0.93177 0.77249 0.89550 0.88653 0.87283 0.91818 0.85386 0.85471 0.85508 0.85280 0.90715 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.82 10.97 55.49 0.61 -25.21 16 2 C 0.01 0.25 4.98 -17.43 -0.09 0.16 16 3 Si 0.90 21.38 29.57 -169.99 -5.03 16.36 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.99 9.41 -15.06 -0.14 -7.13 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.34 2.26 -172.11 -0.39 -14.73 16 10 C 0.15 3.25 5.66 -4.08 -0.02 3.23 16 11 C -0.15 -2.56 5.74 -28.58 -0.16 -2.73 16 12 C -0.10 -1.54 5.15 -29.79 -0.15 -1.69 16 13 C -0.11 -1.88 5.06 -28.01 -0.14 -2.02 16 14 C 0.12 2.22 2.23 -68.50 -0.15 2.06 16 15 H 0.07 1.44 6.83 -51.93 -0.35 1.09 16 16 N -0.72 -11.39 4.26 -54.36 -0.23 -11.62 16 17 C 0.52 8.85 5.75 -10.99 -0.06 8.79 16 18 O -0.53 -11.34 15.78 5.56 0.09 -11.26 16 19 C -0.06 -0.81 2.70 -92.86 -0.25 -1.07 16 20 H 0.10 0.99 8.13 -51.93 -0.42 0.56 16 21 C -0.15 -1.70 5.35 -26.48 -0.14 -1.85 16 22 C 0.07 0.63 7.03 37.37 0.26 0.89 16 23 O -0.32 -4.17 10.27 -19.26 -0.20 -4.37 16 24 C 0.14 1.96 6.47 -39.19 -0.25 1.71 16 25 C -0.15 -2.04 9.94 -39.34 -0.39 -2.43 16 26 C -0.09 -1.10 10.04 -39.66 -0.40 -1.50 16 27 C -0.14 -2.10 10.04 -39.61 -0.40 -2.49 16 28 C -0.07 -1.13 9.10 -39.53 -0.36 -1.48 16 29 C -0.15 -2.24 5.43 -104.44 -0.57 -2.80 16 30 C 0.18 4.22 4.22 -2.96 -0.01 4.21 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.05 0.99 7.99 -51.93 -0.41 0.57 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.76 7.36 -51.93 -0.38 0.38 16 38 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 39 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 40 H 0.39 5.06 8.50 -40.82 -0.35 4.72 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.37 7.46 -51.93 -0.39 0.99 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 48 H 0.13 2.14 6.77 -52.48 -0.36 1.78 16 49 H 0.07 1.94 6.45 -51.93 -0.33 1.60 16 50 H 0.03 0.93 7.99 -51.93 -0.41 0.51 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -32.45 388.86 -10.71 -43.16 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.98 Total: 7.95 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.44 Total: -6.15 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.01 Total: -51.56 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.11 Total: -15.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.45 -10.71 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034446638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.816 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds