Wall clock time and date at job start Wed Apr 1 2020 02:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99679 * 2 1 4 4 H 1.48502 * 109.47195 * 270.00514 * 3 2 1 5 5 H 1.48500 * 109.46956 * 30.00322 * 3 2 1 6 6 H 1.48495 * 109.47300 * 149.99964 * 3 2 1 7 7 C 1.38809 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99777 * 190.37197 * 7 2 1 9 9 N 1.36937 * 119.99949 * 10.36853 * 7 2 1 10 10 C 1.44585 * 118.64224 * 210.52126 * 9 7 2 11 11 C 1.54863 * 109.58116 * 270.71834 * 10 9 7 12 12 C 1.47096 * 110.31902 * 288.74347 * 11 10 9 13 13 C 1.52566 * 114.32525 * 62.80431 * 12 11 10 14 14 C 1.50887 * 109.36135 * 274.98743 * 13 12 11 15 15 H 1.09003 * 109.36237 * 331.69612 * 14 13 12 16 16 N 1.46501 * 109.36735 * 211.95123 * 14 13 12 17 17 C 1.34776 * 120.00032 * 154.99729 * 16 14 13 18 18 O 1.21280 * 119.99861 * 4.83073 * 17 16 14 19 19 C 1.50694 * 119.99937 * 184.83379 * 17 16 14 20 20 H 1.08999 * 109.43553 * 24.47081 * 19 17 16 21 21 C 1.53071 * 109.43573 * 144.34235 * 19 17 16 22 22 C 1.53409 * 108.30753 * 168.21255 * 21 19 17 23 23 O 1.42834 * 108.35953 * 295.25868 * 22 21 19 24 24 C 1.35846 * 117.84905 * 49.21477 * 23 22 21 25 25 C 1.39145 * 118.49139 * 162.91469 * 24 23 22 26 26 C 1.37967 * 120.21304 * 179.76991 * 25 24 23 27 27 C 1.38290 * 119.95567 * 359.97438 * 26 25 24 28 28 C 1.38099 * 119.98734 * 0.07281 * 27 26 25 29 29 C 1.38376 * 121.80692 * 342.82079 * 24 23 22 30 30 C 1.47575 * 118.62640 * 30.48122 * 9 7 2 31 31 H 0.96996 * 120.00603 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.44692 * 150.68643 * 10 9 7 33 33 H 1.08998 * 109.44737 * 30.74327 * 10 9 7 34 34 H 1.08996 * 109.32944 * 49.00190 * 11 10 9 35 35 H 1.09004 * 109.32755 * 168.65608 * 11 10 9 36 36 H 1.08997 * 108.51160 * 184.05527 * 12 11 10 37 37 H 1.08998 * 108.51253 * 301.54634 * 12 11 10 38 38 H 1.09001 * 109.49107 * 34.94946 * 13 12 11 39 39 H 1.09002 * 109.49174 * 155.01722 * 13 12 11 40 40 H 0.97002 * 119.99894 * 334.99830 * 16 14 13 41 41 H 1.08998 * 109.69478 * 287.91794 * 21 19 17 42 42 H 1.08999 * 109.70082 * 48.50805 * 21 19 17 43 43 H 1.08995 * 109.68770 * 175.53862 * 22 21 19 44 44 H 1.08999 * 109.71284 * 54.99040 * 22 21 19 45 45 H 1.07997 * 119.89709 * 359.75485 * 25 24 23 46 46 H 1.07999 * 120.02488 * 180.02562 * 26 25 24 47 47 H 1.08006 * 120.00736 * 180.09259 * 27 26 25 48 48 H 1.08007 * 119.84517 * 179.97438 * 28 27 26 49 49 H 1.09002 * 108.94426 * 17.19400 * 30 9 7 50 50 H 1.09003 * 108.89283 * 258.51167 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0771 -1.2097 0.1679 9 7 1.3424 -2.3782 -0.2145 10 6 1.8429 -3.5828 0.4092 11 6 2.8685 -4.2655 -0.5291 12 6 2.1849 -4.8551 -1.6904 13 6 1.4735 -3.8418 -2.5820 14 6 0.0967 -3.5683 -2.0286 15 1 -0.2565 -4.4465 -1.4880 16 7 -0.8212 -3.2754 -3.1322 17 6 -2.1433 -3.4914 -2.9845 18 8 -2.5838 -3.8445 -1.9111 19 6 -3.0741 -3.2942 -4.1530 20 1 -2.5180 -3.4102 -5.0833 21 6 -4.1922 -4.3381 -4.0954 22 6 -5.2759 -3.9397 -5.1055 23 8 -5.8511 -2.7022 -4.6837 24 6 -5.0074 -1.6875 -4.3612 25 6 -5.5173 -0.3943 -4.3007 26 6 -4.6931 0.6623 -3.9720 27 6 -3.3559 0.4366 -3.7012 28 6 -2.8463 -0.8455 -3.7613 29 6 -3.6682 -1.9098 -4.0930 30 6 0.1411 -2.3634 -1.0715 31 1 -0.4851 0.8400 0.0004 32 1 1.0140 -4.2648 0.5985 33 1 2.3267 -3.3290 1.3524 34 1 3.5911 -3.5255 -0.8731 35 1 3.3896 -5.0518 0.0172 36 1 2.9214 -5.3881 -2.2917 37 1 1.4503 -5.5755 -1.3306 38 1 2.0460 -2.9146 -2.6074 39 1 1.3865 -4.2436 -3.5915 40 1 -0.4773 -2.9261 -3.9693 41 1 -3.7926 -5.3189 -4.3529 42 1 -4.6175 -4.3659 -3.0922 43 1 -6.0464 -4.7099 -5.1403 44 1 -4.8314 -3.8201 -6.0936 45 1 -6.5614 -0.2168 -4.5119 46 1 -5.0921 1.6648 -3.9255 47 1 -2.7103 1.2629 -3.4424 48 1 -1.8015 -1.0191 -3.5497 49 1 0.1364 -1.4448 -1.6583 50 1 -0.7452 -2.3823 -0.4372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034446638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:06 Heat of formation + Delta-G solvation = -50.869362 kcal Electronic energy + Delta-G solvation = -31744.915447 eV Core-core repulsion = 27736.600196 eV Total energy + Delta-G solvation = -4008.315252 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.12289 -40.67731 -39.22533 -38.46391 -36.07117 -35.31370 -35.16483 -32.68868 -31.83926 -31.37637 -31.20669 -28.04717 -27.37813 -25.90692 -25.01957 -24.54943 -23.60494 -22.11037 -21.48155 -20.97025 -20.62253 -19.00312 -18.57749 -18.05781 -17.73683 -17.27823 -17.09392 -16.94160 -15.99951 -15.98292 -15.77885 -15.46885 -15.33662 -15.00006 -14.88234 -14.71511 -14.54598 -14.21734 -14.10673 -14.03040 -13.73143 -13.44418 -12.99983 -12.98241 -12.92705 -12.81356 -12.52203 -12.46827 -12.17104 -12.10533 -12.06001 -11.89712 -11.80339 -11.63311 -11.54346 -11.41184 -11.16056 -10.85934 -10.53171 -10.03596 -9.81592 -9.16977 -8.60241 -7.83232 -5.38174 0.25519 0.41082 1.44273 1.45293 1.54572 1.57533 2.11787 2.35838 2.50745 2.75324 3.29080 3.42268 3.57774 3.62639 3.72404 3.87250 3.94039 4.06751 4.09147 4.13885 4.16689 4.29975 4.36853 4.43348 4.45038 4.48822 4.49298 4.51044 4.63250 4.67768 4.82946 4.89058 4.94302 4.98386 5.07543 5.09369 5.15028 5.26286 5.28362 5.30616 5.39198 5.41230 5.45803 5.55886 5.56954 5.62603 5.69135 5.78562 5.82202 6.41231 6.43661 6.56833 7.17167 7.26781 7.92661 8.34848 9.19663 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.004111 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.712048 B = 6809.706251 C = 8841.528757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.044 4.044 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.601 5.601 10 C 0.146 3.854 11 C -0.132 4.132 12 C -0.100 4.100 13 C -0.106 4.106 14 C 0.135 3.865 15 H 0.056 0.944 16 N -0.707 5.707 17 C 0.521 3.479 18 O -0.581 6.581 19 C -0.055 4.055 20 H 0.135 0.865 21 C -0.144 4.144 22 C 0.063 3.937 23 O -0.326 6.326 24 C 0.129 3.871 25 C -0.158 4.158 26 C -0.081 4.081 27 C -0.162 4.162 28 C -0.094 4.094 29 C -0.163 4.163 30 C 0.200 3.800 31 H 0.246 0.754 32 H 0.026 0.974 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.089 0.911 40 H 0.411 0.589 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.139 0.861 44 H 0.090 0.910 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.124 0.876 48 H 0.111 0.889 49 H 0.047 0.953 50 H -0.030 1.030 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -8.020 -16.461 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.323 5.323 10 C 0.020 3.980 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.144 4.144 14 C 0.029 3.971 15 H 0.074 0.926 16 N -0.359 5.359 17 C 0.308 3.692 18 O -0.460 6.460 19 C -0.076 4.076 20 H 0.153 0.847 21 C -0.182 4.182 22 C -0.011 4.011 23 O -0.241 6.241 24 C 0.084 3.916 25 C -0.176 4.176 26 C -0.098 4.098 27 C -0.180 4.180 28 C -0.113 4.113 29 C -0.164 4.164 30 C 0.073 3.927 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.248 0.752 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.157 0.843 44 H 0.108 0.892 45 H 0.170 0.830 46 H 0.174 0.826 47 H 0.142 0.858 48 H 0.129 0.871 49 H 0.065 0.935 50 H -0.012 1.012 Dipole moment (debyes) X Y Z Total from point charges -6.686 -8.206 -15.679 18.918 hybrid contribution 0.727 1.386 0.556 1.661 sum -5.960 -6.821 -15.123 17.628 Atomic orbital electron populations 1.70270 1.06669 1.25439 1.55489 1.25913 0.95947 1.01461 1.00659 0.85325 0.78049 0.79716 0.77707 1.20750 1.22623 1.19275 1.19493 0.91281 0.85173 1.43694 0.91454 1.43706 1.30415 1.04504 1.53696 1.20943 0.95015 0.87671 0.94399 1.21319 0.98603 0.99616 0.97659 1.20232 0.99643 0.97262 0.96625 1.21215 0.93309 1.00418 0.99446 1.21373 0.90022 0.97745 0.87949 0.92558 1.46146 1.06358 1.65938 1.17433 1.20830 0.83057 0.75758 0.89605 1.90689 1.76836 1.48687 1.29761 1.20231 0.96380 0.93081 0.97940 0.84745 1.22170 0.95639 0.99185 1.01224 1.23291 0.97421 0.83533 0.96866 1.85962 1.34731 1.21797 1.81570 1.18791 0.88008 0.88760 0.96081 1.20887 1.01887 0.89293 1.05526 1.21259 0.92523 0.99924 0.96138 1.21230 0.96951 0.96892 1.02974 1.21093 0.99602 0.93153 0.97427 1.19463 0.93964 0.94722 1.08293 1.20874 0.86475 0.94902 0.90411 0.94470 0.95524 0.94593 0.93115 0.90565 0.90179 0.93015 0.92245 0.89289 0.75183 0.86868 0.92159 0.84323 0.89219 0.83028 0.82552 0.85782 0.87129 0.93494 1.01172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 10.97 21.65 0.24 -56.61 16 2 C -0.04 -2.49 4.98 84.86 0.42 -2.06 16 3 Si 0.96 45.13 29.57 68.60 2.03 47.15 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.27 -14.61 9.41 84.03 0.79 -13.82 16 8 H 0.07 3.59 7.85 -2.91 -0.02 3.57 16 9 N -0.60 -30.57 2.26 -698.44 -1.58 -32.14 16 10 C 0.15 6.27 5.66 87.37 0.49 6.76 16 11 C -0.13 -4.35 5.74 29.40 0.17 -4.18 16 12 C -0.10 -2.86 5.15 28.61 0.15 -2.72 16 13 C -0.11 -3.29 5.06 29.76 0.15 -3.14 16 14 C 0.14 5.17 2.23 44.62 0.10 5.27 16 15 H 0.06 2.35 6.83 -2.39 -0.02 2.33 16 16 N -0.71 -22.70 4.26 -444.29 -1.89 -24.60 16 17 C 0.52 18.10 5.75 87.66 0.50 18.60 16 18 O -0.58 -26.45 15.78 -3.03 -0.05 -26.49 16 19 C -0.06 -1.42 2.70 -12.24 -0.03 -1.45 16 20 H 0.13 2.37 8.13 -2.39 -0.02 2.35 16 21 C -0.14 -3.14 5.35 30.76 0.16 -2.97 16 22 C 0.06 1.04 7.03 72.12 0.51 1.55 16 23 O -0.33 -7.97 10.27 -91.82 -0.94 -8.91 16 24 C 0.13 3.60 6.47 22.52 0.15 3.75 16 25 C -0.16 -3.98 9.94 22.42 0.22 -3.76 16 26 C -0.08 -2.04 10.04 22.22 0.22 -1.82 16 27 C -0.16 -4.98 10.04 22.25 0.22 -4.76 16 28 C -0.09 -3.13 9.10 22.30 0.20 -2.93 16 29 C -0.16 -4.86 5.43 -19.75 -0.11 -4.97 16 30 C 0.20 10.14 4.22 86.49 0.36 10.50 16 31 H 0.25 14.69 8.31 -92.71 -0.77 13.91 16 32 H 0.03 1.14 8.07 -2.39 -0.02 1.13 16 33 H 0.04 1.57 7.99 -2.39 -0.02 1.55 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.05 1.49 7.36 -2.39 -0.02 1.47 16 38 H 0.06 2.15 7.48 -2.39 -0.02 2.13 16 39 H 0.09 2.10 7.94 -2.39 -0.02 2.09 16 40 H 0.41 10.28 8.50 -92.71 -0.79 9.49 16 41 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.76 7.46 -2.39 -0.02 1.74 16 43 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 47 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 48 H 0.11 3.96 6.77 -2.91 -0.02 3.94 16 49 H 0.05 2.60 6.45 -2.39 -0.02 2.59 16 50 H -0.03 -1.86 7.99 -2.39 -0.02 -1.88 16 Total: -1.00 -77.32 388.86 2.65 -74.67 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.15 Total: 29.09 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 4.69 Total: -2.15 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -3.23 Total: -113.36 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.99 Total: -35.41 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -77.32 2.65 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034446638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.797 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds