Wall clock time and date at job start Wed Apr 1 2020 02:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47161 * 275.29645 * 3 2 1 5 5 H 1.48501 * 109.47614 * 35.29953 * 3 2 1 6 6 H 1.48502 * 109.46941 * 155.29982 * 3 2 1 7 7 C 1.38806 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00583 * 338.98234 * 7 2 1 9 9 N 1.36939 * 119.99925 * 158.97658 * 7 2 1 10 10 C 1.43436 * 120.53850 * 321.61011 * 9 7 2 11 11 C 1.54900 * 116.07992 * 271.54957 * 10 9 7 12 12 C 1.54842 * 110.14233 * 318.63523 * 11 10 9 13 13 C 1.50128 * 110.81529 * 321.13870 * 12 11 10 14 14 C 1.52523 * 105.41983 * 97.67519 * 13 12 11 15 15 H 1.09004 * 108.40090 * 31.75679 * 14 13 12 16 16 N 1.46504 * 108.52195 * 149.35235 * 14 13 12 17 17 C 1.34775 * 120.00421 * 209.72295 * 16 14 13 18 18 O 1.21280 * 119.99943 * 5.12328 * 17 16 14 19 19 C 1.50700 * 119.99733 * 185.12706 * 17 16 14 20 20 H 1.09000 * 109.40407 * 23.80430 * 19 17 16 21 21 C 1.53067 * 109.43429 * 143.69963 * 19 17 16 22 22 C 1.53402 * 108.31838 * 168.22867 * 21 19 17 23 23 O 1.42827 * 108.37321 * 295.30409 * 22 21 19 24 24 C 1.35847 * 117.84047 * 49.26479 * 23 22 21 25 25 C 1.39148 * 118.49302 * 162.70147 * 24 23 22 26 26 C 1.37970 * 120.21258 * 179.73795 * 25 24 23 27 27 C 1.38292 * 119.95570 * 359.97438 * 26 25 24 28 28 C 1.38105 * 119.98904 * 0.07513 * 27 26 25 29 29 C 1.38367 * 121.80519 * 342.60235 * 24 23 22 30 30 C 1.46235 * 114.28337 * 270.59890 * 14 13 12 31 31 H 0.97001 * 119.99570 * 0.02562 * 1 2 3 32 32 H 1.09005 * 108.15457 * 33.26350 * 10 9 7 33 33 H 1.08994 * 108.16098 * 150.03558 * 10 9 7 34 34 H 1.09000 * 109.36104 * 78.84195 * 11 10 9 35 35 H 1.09000 * 109.35603 * 198.57182 * 11 10 9 36 36 H 1.09003 * 109.20960 * 81.47518 * 12 11 10 37 37 H 1.08996 * 109.20891 * 200.83578 * 12 11 10 38 38 H 1.09006 * 110.24594 * 338.70514 * 13 12 11 39 39 H 1.08993 * 110.24980 * 216.65639 * 13 12 11 40 40 H 0.97001 * 119.99574 * 29.72668 * 16 14 13 41 41 H 1.09004 * 109.69115 * 48.51801 * 21 19 17 42 42 H 1.09002 * 109.72776 * 287.95671 * 21 19 17 43 43 H 1.09001 * 109.68545 * 175.58480 * 22 21 19 44 44 H 1.08998 * 109.71776 * 55.04052 * 22 21 19 45 45 H 1.08000 * 119.89736 * 359.76622 * 25 24 23 46 46 H 1.07995 * 120.02161 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00654 * 180.35655 * 27 26 25 48 48 H 1.07990 * 119.84704 * 179.97438 * 28 27 26 49 49 H 1.09000 * 109.84339 * 177.91555 * 30 14 13 50 50 H 1.08999 * 109.84408 * 298.82852 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3858 2.1110 -1.3941 5 1 1.5082 2.6178 0.8090 6 1 3.5993 1.4103 0.5851 7 6 2.0102 -1.2021 0.0005 8 1 1.5241 -2.1063 0.3364 9 7 3.3112 -1.2419 -0.4249 10 6 3.7374 -0.4488 -1.5415 11 6 3.5910 -1.1040 -2.9375 12 6 4.0143 -2.5921 -2.8751 13 6 5.2080 -2.7703 -1.9822 14 6 4.6449 -3.2150 -0.6363 15 1 3.7418 -3.7980 -0.8169 16 7 5.6310 -4.0784 0.0184 17 6 5.2235 -5.0502 0.8585 18 8 4.0397 -5.2713 1.0014 19 6 6.2391 -5.8622 1.6204 20 1 7.1636 -5.2921 1.7118 21 6 5.6953 -6.1781 3.0159 22 6 6.5996 -7.2384 3.6571 23 8 6.4928 -8.4417 2.8950 24 6 6.6304 -8.3528 1.5465 25 6 6.8946 -9.5149 0.8282 26 6 7.0356 -9.4664 -0.5434 27 6 6.9136 -8.2598 -1.2079 28 6 6.6524 -7.1042 -0.4981 29 6 6.5128 -7.1463 0.8794 30 6 4.3150 -2.1160 0.2703 31 1 -0.4849 0.8401 -0.0004 32 1 3.1630 0.4776 -1.5391 33 1 4.7875 -0.1951 -1.3969 34 1 2.5523 -1.0371 -3.2609 35 1 4.2263 -0.5794 -3.6512 36 1 3.1855 -3.1849 -2.4881 37 1 4.2635 -2.9365 -3.8788 38 1 5.7425 -1.8264 -1.8742 39 1 5.8701 -3.5362 -2.3859 40 1 6.5771 -3.9504 -0.1528 41 1 4.6784 -6.5623 2.9356 42 1 5.6993 -5.2745 3.6256 43 1 6.2787 -7.4234 4.6823 44 1 7.6330 -6.8917 3.6528 45 1 6.9892 -10.4580 1.3460 46 1 7.2402 -10.3703 -1.0979 47 1 7.0181 -8.2218 -2.2821 48 1 6.5580 -6.1631 -1.0193 49 1 3.8863 -2.5119 1.1910 50 1 5.2130 -1.5416 0.4976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034446639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:10 Heat of formation + Delta-G solvation = -17.886338 kcal Electronic energy + Delta-G solvation = -31277.336253 eV Core-core repulsion = 27270.451253 eV Total energy + Delta-G solvation = -4006.885000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24675 -39.70030 -37.96186 -37.69974 -34.70004 -34.35065 -33.21860 -31.34996 -30.95088 -30.42545 -30.21947 -26.76808 -26.22370 -24.60394 -24.02598 -23.23626 -22.59739 -20.94219 -20.33247 -19.85942 -19.36675 -18.15893 -17.11677 -16.90258 -16.43110 -16.31124 -16.16285 -15.42713 -15.16499 -14.94009 -14.41355 -14.22329 -14.13845 -13.99256 -13.81683 -13.54282 -13.40591 -13.09868 -12.96257 -12.76262 -12.62602 -12.12237 -12.06367 -11.91258 -11.74079 -11.70155 -11.26351 -11.15234 -11.08195 -10.84529 -10.78172 -10.42866 -10.40139 -10.13981 -10.03491 -9.71659 -9.67222 -9.43428 -9.01751 -8.88092 -8.44292 -8.36241 -6.80663 -5.96987 -3.42016 1.05932 1.22152 2.73283 3.03357 3.23863 3.31426 3.46238 3.51235 3.58844 4.29146 4.40829 4.47036 4.52927 4.65603 4.86291 4.88165 4.90562 4.99711 5.02632 5.11966 5.20584 5.25122 5.28000 5.31548 5.35365 5.36995 5.50117 5.64819 5.76167 5.84243 5.87848 5.91556 5.94929 6.05864 6.08532 6.13504 6.20359 6.31691 6.33351 6.48734 6.54111 6.55209 6.59809 6.69438 6.75589 6.80751 6.88677 6.98437 7.21146 7.65338 8.09715 8.35798 8.41043 9.01653 9.71953 10.13084 11.18315 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.926444 B = 9450.895060 C =10387.011129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.038 3.962 3 Si 0.883 3.117 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.142 4.142 12 C -0.106 4.106 13 C -0.118 4.118 14 C 0.129 3.871 15 H 0.092 0.908 16 N -0.730 5.730 17 C 0.521 3.479 18 O -0.522 6.522 19 C -0.063 4.063 20 H 0.099 0.901 21 C -0.149 4.149 22 C 0.065 3.935 23 O -0.316 6.316 24 C 0.141 3.859 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.151 4.151 28 C -0.081 4.081 29 C -0.147 4.147 30 C 0.132 3.868 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.393 0.607 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.070 0.930 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.153 -14.656 0.272 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.163 4.163 3 Si 0.714 3.286 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.183 4.183 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.025 3.975 15 H 0.110 0.890 16 N -0.382 5.382 17 C 0.305 3.695 18 O -0.396 6.396 19 C -0.085 4.085 20 H 0.117 0.883 21 C -0.187 4.187 22 C -0.010 4.010 23 O -0.229 6.229 24 C 0.096 3.904 25 C -0.170 4.170 26 C -0.104 4.104 27 C -0.169 4.169 28 C -0.099 4.099 29 C -0.149 4.149 30 C 0.006 3.994 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.227 0.773 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.088 0.912 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 19.039 -14.850 0.556 24.152 hybrid contribution 0.826 1.399 -0.244 1.643 sum 19.865 -13.451 0.312 23.993 Atomic orbital electron populations 1.69866 1.05972 1.26665 1.51508 1.25479 0.95068 0.97751 0.97984 0.86825 0.80440 0.84538 0.76786 1.21417 1.23094 1.19648 1.18779 0.85142 0.94271 1.41243 0.90401 1.44026 1.07107 1.51338 1.29186 1.20708 0.96564 0.93872 0.86936 1.22818 1.00981 0.95223 0.99245 1.21294 0.97375 0.97967 0.97813 1.21308 0.98333 1.01106 0.94879 1.20959 0.91735 0.92440 0.92394 0.89020 1.46561 1.10475 1.34310 1.46899 1.20138 0.89500 0.80025 0.79842 1.90764 1.17505 1.67393 1.63981 1.20185 0.99016 0.93848 0.95413 0.88279 1.22183 1.01676 1.00659 0.94153 1.23003 0.99557 0.83456 0.95031 1.85992 1.87206 1.34394 1.15350 1.18643 0.95788 0.93185 0.82786 1.20587 1.05330 0.97023 0.94035 1.20950 0.98007 0.98069 0.93324 1.21013 1.03295 0.92495 1.00083 1.21011 0.97182 0.99131 0.92551 1.19381 1.07538 0.93353 0.94598 1.20705 0.92481 0.91063 0.95111 0.92705 0.94092 0.95263 0.92034 0.93252 0.91266 0.93529 0.91031 0.92029 0.77343 0.88537 0.89102 0.86992 0.91656 0.85156 0.85366 0.85730 0.85686 0.91157 0.95063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.97 55.49 0.78 -26.98 16 2 C 0.04 1.10 5.33 -17.43 -0.09 1.01 16 3 Si 0.88 22.43 25.01 -169.99 -4.25 18.18 16 4 H -0.29 -7.05 6.75 56.52 0.38 -6.66 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.27 -7.53 9.96 -15.06 -0.15 -7.68 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 N -0.59 -13.94 2.18 -175.09 -0.38 -14.32 16 10 C 0.15 3.12 4.19 -4.66 -0.02 3.10 16 11 C -0.14 -2.60 6.41 -24.76 -0.16 -2.76 16 12 C -0.11 -1.73 5.65 -27.19 -0.15 -1.89 16 13 C -0.12 -1.67 5.25 -28.40 -0.15 -1.82 16 14 C 0.13 2.13 2.05 -71.39 -0.15 1.99 16 15 H 0.09 1.88 6.16 -51.93 -0.32 1.56 16 16 N -0.73 -9.49 4.20 -57.21 -0.24 -9.73 16 17 C 0.52 7.66 5.69 -10.99 -0.06 7.59 16 18 O -0.52 -10.38 15.64 5.56 0.09 -10.29 16 19 C -0.06 -0.71 2.70 -92.86 -0.25 -0.96 16 20 H 0.10 0.83 8.12 -51.93 -0.42 0.41 16 21 C -0.15 -1.59 5.36 -26.49 -0.14 -1.74 16 22 C 0.06 0.56 7.03 37.37 0.26 0.82 16 23 O -0.32 -3.61 10.27 -19.26 -0.20 -3.80 16 24 C 0.14 1.67 6.47 -39.20 -0.25 1.42 16 25 C -0.15 -1.56 9.94 -39.34 -0.39 -1.95 16 26 C -0.09 -0.78 10.04 -39.66 -0.40 -1.18 16 27 C -0.15 -1.47 10.04 -39.61 -0.40 -1.87 16 28 C -0.08 -0.89 9.10 -39.53 -0.36 -1.25 16 29 C -0.15 -1.74 5.42 -104.44 -0.57 -2.30 16 30 C 0.13 2.59 5.53 -5.21 -0.03 2.56 16 31 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 32 H 0.04 0.98 3.00 -51.93 -0.16 0.82 16 33 H 0.03 0.55 6.88 -51.93 -0.36 0.20 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 1.31 6.82 -51.93 -0.35 0.96 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.99 6.28 -51.93 -0.33 0.67 16 39 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 40 H 0.39 3.71 8.59 -40.82 -0.35 3.36 16 41 H 0.10 1.31 7.47 -51.93 -0.39 0.92 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.13 1.29 6.81 -52.49 -0.36 0.94 16 49 H 0.07 1.53 7.98 -51.93 -0.41 1.12 16 50 H 0.03 0.56 8.13 -51.93 -0.42 0.14 16 LS Contribution 382.06 15.07 5.76 5.76 Total: -1.00 -34.38 382.06 -9.58 -43.96 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.67 Total: 4.15 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.46 Total: -6.92 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: 0.15 Total: -51.03 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.11 Total: -14.09 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.25 Total: 18.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.38 -9.58 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034446639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds