Wall clock time and date at job start Wed Apr 1 2020 02:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47161 * 275.29645 * 3 2 1 5 5 H 1.48501 * 109.47614 * 35.29953 * 3 2 1 6 6 H 1.48502 * 109.46941 * 155.29982 * 3 2 1 7 7 C 1.38806 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00583 * 338.98234 * 7 2 1 9 9 N 1.36939 * 119.99925 * 158.97658 * 7 2 1 10 10 C 1.43436 * 120.53850 * 321.61011 * 9 7 2 11 11 C 1.54900 * 116.07992 * 271.54957 * 10 9 7 12 12 C 1.54842 * 110.14233 * 318.63523 * 11 10 9 13 13 C 1.50128 * 110.81529 * 321.13870 * 12 11 10 14 14 C 1.52523 * 105.41983 * 97.67519 * 13 12 11 15 15 H 1.09004 * 108.40090 * 31.75679 * 14 13 12 16 16 N 1.46504 * 108.52195 * 149.35235 * 14 13 12 17 17 C 1.34775 * 120.00421 * 209.72295 * 16 14 13 18 18 O 1.21280 * 119.99943 * 5.12328 * 17 16 14 19 19 C 1.50700 * 119.99733 * 185.12706 * 17 16 14 20 20 H 1.09000 * 109.40407 * 23.80430 * 19 17 16 21 21 C 1.53067 * 109.43429 * 143.69963 * 19 17 16 22 22 C 1.53402 * 108.31838 * 168.22867 * 21 19 17 23 23 O 1.42827 * 108.37321 * 295.30409 * 22 21 19 24 24 C 1.35847 * 117.84047 * 49.26479 * 23 22 21 25 25 C 1.39148 * 118.49302 * 162.70147 * 24 23 22 26 26 C 1.37970 * 120.21258 * 179.73795 * 25 24 23 27 27 C 1.38292 * 119.95570 * 359.97438 * 26 25 24 28 28 C 1.38105 * 119.98904 * 0.07513 * 27 26 25 29 29 C 1.38367 * 121.80519 * 342.60235 * 24 23 22 30 30 C 1.46235 * 114.28337 * 270.59890 * 14 13 12 31 31 H 0.97001 * 119.99570 * 0.02562 * 1 2 3 32 32 H 1.09005 * 108.15457 * 33.26350 * 10 9 7 33 33 H 1.08994 * 108.16098 * 150.03558 * 10 9 7 34 34 H 1.09000 * 109.36104 * 78.84195 * 11 10 9 35 35 H 1.09000 * 109.35603 * 198.57182 * 11 10 9 36 36 H 1.09003 * 109.20960 * 81.47518 * 12 11 10 37 37 H 1.08996 * 109.20891 * 200.83578 * 12 11 10 38 38 H 1.09006 * 110.24594 * 338.70514 * 13 12 11 39 39 H 1.08993 * 110.24980 * 216.65639 * 13 12 11 40 40 H 0.97001 * 119.99574 * 29.72668 * 16 14 13 41 41 H 1.09004 * 109.69115 * 48.51801 * 21 19 17 42 42 H 1.09002 * 109.72776 * 287.95671 * 21 19 17 43 43 H 1.09001 * 109.68545 * 175.58480 * 22 21 19 44 44 H 1.08998 * 109.71776 * 55.04052 * 22 21 19 45 45 H 1.08000 * 119.89736 * 359.76622 * 25 24 23 46 46 H 1.07995 * 120.02161 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.00654 * 180.35655 * 27 26 25 48 48 H 1.07990 * 119.84704 * 179.97438 * 28 27 26 49 49 H 1.09000 * 109.84339 * 177.91555 * 30 14 13 50 50 H 1.08999 * 109.84408 * 298.82852 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3858 2.1110 -1.3941 5 1 1.5082 2.6178 0.8090 6 1 3.5993 1.4103 0.5851 7 6 2.0102 -1.2021 0.0005 8 1 1.5241 -2.1063 0.3364 9 7 3.3112 -1.2419 -0.4249 10 6 3.7374 -0.4488 -1.5415 11 6 3.5910 -1.1040 -2.9375 12 6 4.0143 -2.5921 -2.8751 13 6 5.2080 -2.7703 -1.9822 14 6 4.6449 -3.2150 -0.6363 15 1 3.7418 -3.7980 -0.8169 16 7 5.6310 -4.0784 0.0184 17 6 5.2235 -5.0502 0.8585 18 8 4.0397 -5.2713 1.0014 19 6 6.2391 -5.8622 1.6204 20 1 7.1636 -5.2921 1.7118 21 6 5.6953 -6.1781 3.0159 22 6 6.5996 -7.2384 3.6571 23 8 6.4928 -8.4417 2.8950 24 6 6.6304 -8.3528 1.5465 25 6 6.8946 -9.5149 0.8282 26 6 7.0356 -9.4664 -0.5434 27 6 6.9136 -8.2598 -1.2079 28 6 6.6524 -7.1042 -0.4981 29 6 6.5128 -7.1463 0.8794 30 6 4.3150 -2.1160 0.2703 31 1 -0.4849 0.8401 -0.0004 32 1 3.1630 0.4776 -1.5391 33 1 4.7875 -0.1951 -1.3969 34 1 2.5523 -1.0371 -3.2609 35 1 4.2263 -0.5794 -3.6512 36 1 3.1855 -3.1849 -2.4881 37 1 4.2635 -2.9365 -3.8788 38 1 5.7425 -1.8264 -1.8742 39 1 5.8701 -3.5362 -2.3859 40 1 6.5771 -3.9504 -0.1528 41 1 4.6784 -6.5623 2.9356 42 1 5.6993 -5.2745 3.6256 43 1 6.2787 -7.4234 4.6823 44 1 7.6330 -6.8917 3.6528 45 1 6.9892 -10.4580 1.3460 46 1 7.2402 -10.3703 -1.0979 47 1 7.0181 -8.2218 -2.2821 48 1 6.5580 -6.1631 -1.0193 49 1 3.8863 -2.5119 1.1910 50 1 5.2130 -1.5416 0.4976 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034446639.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:09 Heat of formation + Delta-G solvation = -41.051349 kcal Electronic energy + Delta-G solvation = -31278.340763 eV Core-core repulsion = 27270.451253 eV Total energy + Delta-G solvation = -4007.889511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.16242 -40.89825 -39.39263 -38.45152 -36.26963 -35.32141 -34.80494 -33.35952 -31.92190 -31.41520 -31.19509 -28.26500 -27.47503 -26.06940 -25.06836 -24.56340 -23.58655 -22.14797 -21.71305 -21.10423 -20.63379 -19.01693 -18.53874 -18.02326 -17.84482 -17.61004 -17.18699 -16.98846 -16.29620 -15.94744 -15.75393 -15.53481 -15.34330 -15.14040 -14.88366 -14.77332 -14.66492 -14.44846 -14.21692 -14.14424 -13.80914 -13.51669 -13.42015 -13.28664 -12.93352 -12.90042 -12.60527 -12.49894 -12.14218 -12.07874 -11.94698 -11.84679 -11.71261 -11.65889 -11.63792 -11.39084 -11.16348 -10.92285 -10.62033 -10.15697 -9.78906 -9.15069 -8.75568 -8.22446 -5.65110 0.28227 0.44024 1.28975 1.39203 1.51594 1.56122 2.06939 2.36151 2.39581 2.77731 3.03418 3.29919 3.46337 3.57141 3.67693 3.71662 3.89155 4.05809 4.09724 4.11323 4.12470 4.20672 4.35539 4.37302 4.42044 4.45833 4.50470 4.51812 4.52825 4.57765 4.65059 4.80652 4.88698 4.91720 4.97565 5.00501 5.02609 5.07636 5.21880 5.25718 5.30315 5.32559 5.42036 5.43575 5.53860 5.54777 5.56537 5.83824 5.92371 6.12277 6.44175 6.56868 6.97070 7.28201 7.58359 8.01936 8.97895 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.002962 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.926444 B = 9450.895060 C =10387.011129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.022 4.022 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.310 1.310 6 H -0.254 1.254 7 C -0.259 4.259 8 H 0.019 0.981 9 N -0.606 5.606 10 C 0.135 3.865 11 C -0.139 4.139 12 C -0.103 4.103 13 C -0.105 4.105 14 C 0.141 3.859 15 H 0.041 0.959 16 N -0.710 5.710 17 C 0.519 3.481 18 O -0.584 6.584 19 C -0.055 4.055 20 H 0.136 0.864 21 C -0.150 4.150 22 C 0.066 3.934 23 O -0.331 6.331 24 C 0.121 3.879 25 C -0.162 4.162 26 C -0.083 4.083 27 C -0.155 4.155 28 C -0.095 4.095 29 C -0.165 4.165 30 C 0.136 3.864 31 H 0.264 0.736 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.027 0.973 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.417 0.583 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.143 0.857 46 H 0.157 0.843 47 H 0.146 0.854 48 H 0.130 0.870 49 H 0.033 0.967 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.270 -14.201 -1.137 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.218 4.218 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.239 1.239 6 H -0.178 1.178 7 C -0.389 4.389 8 H 0.037 0.963 9 N -0.330 5.330 10 C 0.009 3.991 11 C -0.180 4.180 12 C -0.141 4.141 13 C -0.143 4.143 14 C 0.035 3.965 15 H 0.060 0.940 16 N -0.363 5.363 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.076 4.076 20 H 0.154 0.846 21 C -0.188 4.188 22 C -0.009 4.009 23 O -0.246 6.246 24 C 0.076 3.924 25 C -0.181 4.181 26 C -0.101 4.101 27 C -0.173 4.173 28 C -0.113 4.113 29 C -0.166 4.166 30 C 0.012 3.988 31 H 0.073 0.927 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.046 0.954 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.109 0.891 45 H 0.161 0.839 46 H 0.175 0.825 47 H 0.164 0.836 48 H 0.148 0.852 49 H 0.051 0.949 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 24.254 -14.405 -0.877 28.223 hybrid contribution -0.823 1.098 0.180 1.384 sum 23.431 -13.306 -0.697 26.955 Atomic orbital electron populations 1.70024 1.08025 1.27625 1.54000 1.26187 0.95727 1.01730 0.98186 0.85577 0.79180 0.78886 0.77431 1.19665 1.23875 1.17830 1.18493 0.87520 0.92348 1.40536 0.96327 1.44061 1.05872 1.52322 1.30715 1.20909 0.98067 0.92684 0.87411 1.22784 1.00075 0.96912 0.98188 1.21257 0.96985 0.95924 0.99984 1.21293 0.97739 1.03226 0.92025 1.20499 0.91296 0.90987 0.93701 0.94039 1.46269 1.11120 1.33051 1.45882 1.20843 0.89280 0.79907 0.79350 1.90752 1.20542 1.69170 1.65859 1.20205 0.99003 0.93670 0.94683 0.84620 1.22172 1.00125 1.01864 0.94670 1.23211 1.00387 0.81980 0.95274 1.85962 1.87410 1.35712 1.15468 1.18928 0.96583 0.93773 0.83128 1.20907 1.05185 0.97188 0.94791 1.21327 0.96652 0.99083 0.93026 1.21348 1.02483 0.92264 1.01252 1.21198 0.97671 1.00029 0.92425 1.19494 1.08492 0.93467 0.95170 1.20746 0.92183 0.91691 0.94185 0.92724 0.96469 0.91389 0.95365 0.89134 0.95553 0.90326 0.89018 0.88193 0.74454 0.92466 0.87894 0.85048 0.89116 0.83921 0.82492 0.83581 0.85189 0.94852 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.08 13.97 21.65 0.30 -61.78 16 2 C -0.02 -1.34 5.33 84.86 0.45 -0.89 16 3 Si 0.96 47.12 25.01 68.60 1.72 48.84 16 4 H -0.27 -12.41 6.75 99.48 0.67 -11.74 16 5 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 6 H -0.25 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.26 -15.56 9.96 84.03 0.84 -14.73 16 8 H 0.02 1.32 8.06 -2.91 -0.02 1.29 16 9 N -0.61 -28.75 2.18 -707.85 -1.54 -30.29 16 10 C 0.14 5.47 4.19 87.60 0.37 5.83 16 11 C -0.14 -4.81 6.41 31.87 0.20 -4.61 16 12 C -0.10 -3.17 5.65 30.30 0.17 -3.00 16 13 C -0.11 -2.57 5.25 29.51 0.15 -2.42 16 14 C 0.14 4.57 2.05 42.75 0.09 4.66 16 15 H 0.04 1.81 6.16 -2.39 -0.01 1.79 16 16 N -0.71 -17.29 4.20 -453.31 -1.90 -19.19 16 17 C 0.52 15.43 5.69 87.66 0.50 15.93 16 18 O -0.58 -25.03 15.64 -3.03 -0.05 -25.08 16 19 C -0.05 -1.17 2.70 -12.24 -0.03 -1.20 16 20 H 0.14 1.84 8.12 -2.39 -0.02 1.82 16 21 C -0.15 -3.23 5.36 30.75 0.16 -3.06 16 22 C 0.07 1.05 7.03 72.12 0.51 1.55 16 23 O -0.33 -7.37 10.27 -91.83 -0.94 -8.31 16 24 C 0.12 2.78 6.47 22.52 0.15 2.92 16 25 C -0.16 -3.14 9.94 22.43 0.22 -2.91 16 26 C -0.08 -1.34 10.04 22.22 0.22 -1.11 16 27 C -0.16 -2.68 10.04 22.25 0.22 -2.46 16 28 C -0.10 -1.94 9.10 22.30 0.20 -1.74 16 29 C -0.16 -3.72 5.42 -19.75 -0.11 -3.83 16 30 C 0.14 5.34 5.53 83.58 0.46 5.80 16 31 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 32 H 0.02 0.79 3.00 -2.38 -0.01 0.78 16 33 H 0.07 2.23 6.88 -2.39 -0.02 2.22 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.03 1.02 6.82 -2.39 -0.02 1.01 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 1.97 6.28 -2.38 -0.01 1.96 16 39 H 0.10 1.75 8.04 -2.39 -0.02 1.73 16 40 H 0.42 6.23 8.59 -92.71 -0.80 5.43 16 41 H 0.06 1.68 7.47 -2.38 -0.02 1.67 16 42 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 46 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 48 H 0.13 2.39 6.81 -2.92 -0.02 2.37 16 49 H 0.03 1.52 7.98 -2.39 -0.02 1.51 16 50 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 Total: -1.00 -84.57 382.06 2.49 -82.08 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.12 Total: 19.00 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.79 Total: -5.26 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -3.14 Total: -111.26 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.99 Total: -33.39 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.72 Total: 48.84 kcal Total: -84.57 2.49 -82.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034446639.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.027 kcal (2) G-P(sol) polarization free energy of solvation -84.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds