Wall clock time and date at job start Wed Apr 1 2020 02:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00170 * 2 1 4 4 H 1.48499 * 109.46979 * 89.99812 * 3 2 1 5 5 H 1.48499 * 109.47046 * 210.00077 * 3 2 1 6 6 H 1.48500 * 109.46904 * 330.00022 * 3 2 1 7 7 C 1.38812 * 119.99857 * 180.27576 * 2 1 3 8 8 H 1.08002 * 120.00369 * 151.05874 * 7 2 1 9 9 N 1.36944 * 120.00073 * 331.05494 * 7 2 1 10 10 C 1.43438 * 120.53516 * 326.16242 * 9 7 2 11 11 C 1.54396 * 116.38933 * 271.73067 * 10 9 7 12 12 C 1.54845 * 110.07084 * 318.64968 * 11 10 9 13 13 C 1.50126 * 110.81468 * 321.07809 * 12 11 10 14 14 C 1.52524 * 105.41635 * 97.68283 * 13 12 11 15 15 H 1.09005 * 108.52018 * 31.83331 * 14 13 12 16 16 N 1.46492 * 108.40290 * 149.43616 * 14 13 12 17 17 C 1.34774 * 120.00266 * 209.63839 * 16 14 13 18 18 O 1.21284 * 119.99790 * 0.02562 * 17 16 14 19 19 C 1.50695 * 120.00259 * 180.02562 * 17 16 14 20 20 C 1.53002 * 109.47259 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.13020 * 53.30498 * 20 19 17 22 22 O 1.43943 * 110.15532 * 291.52706 * 20 19 17 23 23 C 1.43940 * 104.94715 * 269.32210 * 22 20 19 24 24 C 1.51079 * 105.95945 * 331.55232 * 23 22 20 25 25 C 1.37965 * 132.68767 * 197.68409 * 24 23 22 26 26 C 1.38303 * 119.92043 * 179.97438 * 25 24 23 27 27 C 1.38262 * 120.03714 * 0.02562 * 26 25 24 28 28 C 1.38294 * 120.04426 * 0.02562 * 27 26 25 29 29 C 1.37968 * 119.91740 * 359.96320 * 28 27 26 30 30 C 1.46241 * 114.27354 * 270.59392 * 14 13 12 31 31 H 0.96995 * 120.00098 * 174.25248 * 1 2 3 32 32 H 1.09004 * 108.15947 * 33.30358 * 10 9 7 33 33 H 1.08994 * 108.15506 * 149.87018 * 10 9 7 34 34 H 1.09000 * 109.44209 * 198.43814 * 11 10 9 35 35 H 1.08999 * 109.24349 * 78.73535 * 11 10 9 36 36 H 1.09006 * 109.20845 * 200.73386 * 12 11 10 37 37 H 1.09003 * 109.17084 * 81.40004 * 12 11 10 38 38 H 1.09000 * 110.25078 * 338.70744 * 13 12 11 39 39 H 1.09004 * 110.24664 * 216.65571 * 13 12 11 40 40 H 0.97001 * 120.00043 * 29.65038 * 16 14 13 41 41 H 1.09004 * 109.47456 * 300.00424 * 19 17 16 42 42 H 1.08994 * 109.47494 * 60.00226 * 19 17 16 43 43 H 1.08998 * 110.15435 * 212.42650 * 23 22 20 44 44 H 1.09007 * 110.15413 * 90.67869 * 23 22 20 45 45 H 1.07998 * 120.04205 * 0.03190 * 25 24 23 46 46 H 1.07992 * 119.98090 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.97696 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.03713 * 180.02562 * 28 27 26 49 49 H 1.08993 * 109.84723 * 298.89611 * 30 14 13 50 50 H 1.09009 * 109.89327 * 177.94442 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0058 8 1 2.9891 -1.2585 -0.4587 9 7 1.4538 -2.3168 0.5628 10 6 0.6128 -2.2024 1.7192 11 6 1.3221 -2.2413 3.0901 12 6 2.4319 -3.3211 3.0837 13 6 1.9849 -4.5411 2.3316 14 6 2.5767 -4.3949 0.9335 15 1 3.5246 -3.8625 1.0126 16 7 2.8398 -5.7337 0.4003 17 6 3.8458 -5.9244 -0.4760 18 8 4.5336 -4.9876 -0.8228 19 6 4.1162 -7.3015 -1.0249 20 6 5.3020 -7.2422 -1.9899 21 1 6.1580 -6.7738 -1.5040 22 8 4.9407 -6.5100 -3.1753 23 6 4.4347 -7.5036 -4.0856 24 6 5.1381 -8.7918 -3.7274 25 6 5.3168 -9.9798 -4.4057 26 6 6.0227 -11.0121 -3.8149 27 6 6.5480 -10.8537 -2.5458 28 6 6.3680 -9.6632 -1.8655 29 6 5.6640 -8.6334 -2.4550 30 6 1.7191 -3.6791 -0.0104 31 1 -0.4850 -0.8358 -0.0841 32 1 0.0675 -1.2611 1.6509 33 1 -0.1151 -3.0132 1.6912 34 1 0.5952 -2.4748 3.8681 35 1 1.7671 -1.2670 3.2920 36 1 2.6674 -3.5994 4.1111 37 1 3.3246 -2.9141 2.6089 38 1 0.8967 -4.5744 2.2792 39 1 2.3685 -5.4416 2.8114 40 1 2.2899 -6.4830 0.6778 41 1 4.3493 -7.9804 -0.2046 42 1 3.2341 -7.6612 -1.5545 43 1 4.6648 -7.2233 -5.1134 44 1 3.3578 -7.6157 -3.9585 45 1 4.9069 -10.1033 -5.3972 46 1 6.1635 -11.9423 -4.3451 47 1 7.0987 -11.6605 -2.0852 48 1 6.7787 -9.5395 -0.8743 49 1 0.7795 -4.2165 -0.1376 50 1 2.2241 -3.5841 -0.9718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034509048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:34 Heat of formation + Delta-G solvation = -42.418188 kcal Electronic energy + Delta-G solvation = -30530.134025 eV Core-core repulsion = 26522.185244 eV Total energy + Delta-G solvation = -4007.948781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.03437 -41.03619 -39.39240 -38.28542 -36.38173 -34.85643 -33.58635 -32.86148 -32.29310 -31.79928 -30.61784 -28.03393 -27.48146 -26.11494 -25.35277 -24.42986 -22.55602 -22.32899 -21.77144 -21.39071 -20.66265 -19.19525 -18.33560 -17.80296 -17.65013 -17.25435 -16.83612 -16.45892 -16.29689 -16.13318 -15.87418 -15.58561 -15.32100 -15.13826 -14.94045 -14.67286 -14.41160 -14.25977 -14.13250 -13.98192 -13.80513 -13.48934 -13.28361 -12.90675 -12.88435 -12.81844 -12.63891 -12.41150 -12.23031 -11.99200 -11.92408 -11.86559 -11.79133 -11.64622 -11.34318 -11.14982 -11.08514 -10.89552 -10.53441 -10.08725 -9.85813 -9.57530 -8.92118 -8.17559 -5.53022 0.23941 0.37431 1.52667 1.59293 1.68481 1.78586 2.13714 2.60842 2.71957 2.92279 3.12519 3.18834 3.49203 3.57185 3.65726 3.72364 3.95930 4.02777 4.07038 4.13601 4.19390 4.24452 4.35032 4.36682 4.40640 4.44365 4.49348 4.52157 4.58107 4.59021 4.66520 4.78527 4.81199 4.90242 4.92945 4.95531 5.07786 5.14435 5.23991 5.30774 5.39477 5.40300 5.40729 5.43283 5.52843 5.54201 5.57702 5.79097 5.86893 5.98854 6.37601 6.62361 7.06599 7.36055 7.75155 8.18038 8.89931 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017494 B = 0.002469 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.142696 B =11338.605636 C =12255.384629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.063 4.063 3 Si 1.107 2.893 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.353 4.353 8 H 0.022 0.978 9 N -0.597 5.597 10 C 0.138 3.862 11 C -0.133 4.133 12 C -0.102 4.102 13 C -0.104 4.104 14 C 0.147 3.853 15 H 0.045 0.955 16 N -0.717 5.717 17 C 0.504 3.496 18 O -0.582 6.582 19 C -0.139 4.139 20 C 0.134 3.866 21 H 0.089 0.911 22 O -0.375 6.375 23 C 0.075 3.925 24 C -0.140 4.140 25 C -0.102 4.102 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.096 4.096 29 C -0.138 4.138 30 C 0.137 3.863 31 H 0.256 0.744 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.416 0.584 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.155 0.845 47 H 0.155 0.845 48 H 0.142 0.858 49 H 0.041 0.959 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -28.690 -0.461 29.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.261 4.261 3 Si 0.931 3.069 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.483 4.483 8 H 0.039 0.961 9 N -0.320 5.320 10 C 0.011 3.989 11 C -0.173 4.173 12 C -0.140 4.140 13 C -0.142 4.142 14 C 0.042 3.958 15 H 0.063 0.937 16 N -0.370 5.370 17 C 0.292 3.708 18 O -0.461 6.461 19 C -0.179 4.179 20 C 0.075 3.925 21 H 0.107 0.893 22 O -0.294 6.294 23 C -0.001 4.001 24 C -0.140 4.140 25 C -0.119 4.119 26 C -0.131 4.131 27 C -0.134 4.134 28 C -0.114 4.114 29 C -0.138 4.138 30 C 0.012 3.988 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.253 0.747 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.161 0.839 46 H 0.173 0.827 47 H 0.173 0.827 48 H 0.160 0.840 49 H 0.059 0.941 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.841 -26.132 -0.706 27.596 hybrid contribution -0.116 -1.347 -0.400 1.410 sum 8.725 -27.479 -1.106 28.852 Atomic orbital electron populations 1.70853 1.07386 1.29291 1.48405 1.27042 0.96416 1.04398 0.98276 0.82966 0.73974 0.72576 0.77335 1.20415 1.21046 1.21227 1.19881 0.98612 0.90891 1.38900 0.96060 1.43952 1.59104 1.01356 1.27593 1.20433 0.92339 0.99893 0.86243 1.22633 0.98632 0.97886 0.98173 1.21269 0.97557 0.94953 1.00242 1.21251 1.01576 0.99001 0.92333 1.20380 0.98499 0.82528 0.94437 0.93700 1.46229 1.33956 1.11065 1.45783 1.21190 0.79777 0.91613 0.78251 1.90765 1.50216 1.45591 1.59512 1.22089 1.00830 0.93722 1.01223 1.21023 0.96535 0.88457 0.86448 0.89271 1.89299 1.83521 1.30403 1.26184 1.21978 0.98009 0.84714 0.95370 1.21156 0.99978 0.96741 0.96165 1.20721 0.99226 0.91360 1.00639 1.21553 0.96633 0.99333 0.95590 1.21525 0.99498 0.97308 0.95074 1.20726 0.97531 0.92112 1.01063 1.20905 1.00954 0.95794 0.96182 1.20664 0.96769 0.86351 0.95007 0.93402 0.94618 0.94621 0.90111 0.95074 0.90235 0.94999 0.90331 0.88065 0.74697 0.84254 0.86993 0.87880 0.89921 0.83922 0.82704 0.82687 0.84041 0.94108 0.95841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.21 12.20 21.65 0.26 -56.95 16 2 C -0.06 -3.76 4.81 84.86 0.41 -3.35 16 3 Si 1.11 54.53 30.00 68.60 2.06 56.58 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.35 -21.43 9.43 84.03 0.79 -20.64 16 8 H 0.02 1.41 7.97 -2.91 -0.02 1.39 16 9 N -0.60 -31.39 2.37 -708.87 -1.68 -33.07 16 10 C 0.14 6.49 4.46 87.42 0.39 6.88 16 11 C -0.13 -5.13 6.40 31.70 0.20 -4.92 16 12 C -0.10 -3.41 5.65 30.30 0.17 -3.23 16 13 C -0.10 -2.98 5.24 29.51 0.15 -2.82 16 14 C 0.15 5.37 2.01 42.75 0.09 5.46 16 15 H 0.04 2.05 6.23 -2.38 -0.01 2.04 16 16 N -0.72 -19.83 4.87 -453.33 -2.21 -22.04 16 17 C 0.50 15.90 7.66 87.66 0.67 16.58 16 18 O -0.58 -25.82 15.10 5.57 0.08 -25.74 16 19 C -0.14 -2.91 5.37 29.85 0.16 -2.75 16 20 C 0.13 3.39 2.92 29.97 0.09 3.48 16 21 H 0.09 2.56 7.92 -2.39 -0.02 2.54 16 22 O -0.38 -11.93 10.90 -140.36 -1.53 -13.46 16 23 C 0.08 1.68 7.38 71.36 0.53 2.21 16 24 C -0.14 -2.68 6.32 -19.72 -0.12 -2.80 16 25 C -0.10 -1.41 10.04 22.22 0.22 -1.19 16 26 C -0.11 -1.21 10.05 22.29 0.22 -0.98 16 27 C -0.12 -1.25 10.05 22.29 0.22 -1.03 16 28 C -0.10 -1.39 10.04 22.22 0.22 -1.16 16 29 C -0.14 -2.71 5.62 -19.72 -0.11 -2.82 16 30 C 0.14 6.21 5.54 83.58 0.46 6.67 16 31 H 0.26 16.18 7.24 -92.71 -0.67 15.50 16 32 H 0.04 1.97 5.13 -2.38 -0.01 1.96 16 33 H 0.04 1.51 6.89 -2.39 -0.02 1.49 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.03 1.28 6.83 -2.39 -0.02 1.26 16 38 H 0.08 2.20 6.28 -2.39 -0.02 2.19 16 39 H 0.10 2.12 8.03 -2.39 -0.02 2.10 16 40 H 0.42 7.57 8.61 -92.71 -0.80 6.77 16 41 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.11 2.00 7.96 -2.39 -0.02 1.98 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 47 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 48 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 49 H 0.04 1.70 8.13 -2.39 -0.02 1.68 16 50 H 0.02 1.23 7.93 -2.38 -0.02 1.21 16 Total: -1.00 -83.60 392.00 2.01 -81.59 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.25 Total: 19.51 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.77 Total: -6.44 kcal Atomic # 7 Polarization: -108.43 SS G_CDS: -3.62 Total: -112.05 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -1.45 Total: -39.20 kcal Atomic # 14 Polarization: 54.53 SS G_CDS: 2.06 Total: 56.58 kcal Total: -83.60 2.01 -81.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034509048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.169 kcal (2) G-P(sol) polarization free energy of solvation -83.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds