Wall clock time and date at job start Wed Apr 1 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99618 * 2 1 4 4 H 1.48505 * 109.47164 * 270.00214 * 3 2 1 5 5 H 1.48499 * 109.47560 * 30.00194 * 3 2 1 6 6 H 1.48507 * 109.46866 * 150.00373 * 3 2 1 7 7 C 1.38807 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99499 * 196.90221 * 7 2 1 9 9 N 1.36934 * 120.00290 * 16.91072 * 7 2 1 10 10 C 1.47157 * 120.98052 * 206.24993 * 9 7 2 11 11 C 1.53300 * 108.38341 * 230.51083 * 10 9 7 12 12 O 1.42957 * 109.26046 * 307.71918 * 11 10 9 13 13 C 1.42972 * 114.17113 * 62.50200 * 12 11 10 14 14 H 1.08993 * 109.51342 * 57.44735 * 13 12 11 15 15 C 1.52995 * 109.51347 * 177.55238 * 13 12 11 16 16 N 1.46508 * 109.47048 * 299.89520 * 15 13 12 17 17 C 1.34777 * 120.00046 * 179.97438 * 16 15 13 18 18 O 1.21548 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.47846 * 119.99873 * 179.97438 * 17 16 15 20 20 C 1.39574 * 120.14139 * 179.97438 * 19 17 16 21 21 C 1.37961 * 119.85073 * 179.97438 * 20 19 17 22 22 C 1.38353 * 120.14617 * 359.97438 * 21 20 19 23 23 C 1.50704 * 119.85776 * 179.97438 * 22 21 20 24 24 C 1.53772 * 113.61424 * 239.99920 * 23 22 21 25 25 C 1.53783 * 87.07958 * 220.01432 * 24 23 22 26 26 C 1.53777 * 87.08207 * 25.43370 * 25 24 23 27 27 C 1.38368 * 120.29342 * 0.26821 * 22 21 20 28 28 C 1.37958 * 120.14003 * 359.50057 * 27 22 21 29 29 C 1.47151 * 120.98583 * 26.22060 * 9 7 2 30 30 H 0.97000 * 120.00310 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.68192 * 350.22617 * 10 9 7 32 32 H 1.08995 * 109.68699 * 110.74627 * 10 9 7 33 33 H 1.09001 * 109.51440 * 67.61786 * 11 10 9 34 34 H 1.08992 * 109.51376 * 187.77077 * 11 10 9 35 35 H 1.08998 * 109.47259 * 179.90082 * 15 13 12 36 36 H 1.08996 * 109.47431 * 59.89441 * 15 13 12 37 37 H 0.97002 * 119.99678 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.07810 * 359.95723 * 20 19 17 39 39 H 1.08001 * 119.92495 * 179.97438 * 21 20 19 40 40 H 1.09001 * 112.84389 * 11.19387 * 23 22 21 41 41 H 1.08998 * 113.62097 * 105.46387 * 24 23 22 42 42 H 1.09005 * 113.61881 * 334.56287 * 24 23 22 43 43 H 1.09004 * 113.61273 * 139.98219 * 25 24 23 44 44 H 1.08991 * 113.61463 * 270.87996 * 25 24 23 45 45 H 1.08999 * 113.61415 * 89.11621 * 26 25 24 46 46 H 1.08999 * 113.61480 * 220.02355 * 26 25 24 47 47 H 1.07994 * 119.92938 * 179.74539 * 27 22 21 48 48 H 1.07998 * 120.07131 * 180.24860 * 28 27 22 49 49 H 1.09001 * 109.67900 * 9.76347 * 29 9 7 50 50 H 1.09001 * 109.70900 * 249.23707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3622 -0.3460 10 6 1.8340 -3.6634 0.1611 11 6 1.9812 -4.6207 -1.0272 12 8 0.7655 -4.6295 -1.7791 13 6 0.4242 -3.3661 -2.3549 14 1 1.2368 -3.0274 -2.9974 15 6 -0.8550 -3.5102 -3.1818 16 7 -0.6379 -4.4884 -4.2506 17 6 -1.6344 -4.7798 -5.1100 18 8 -2.7131 -4.2307 -4.9986 19 6 -1.4152 -5.7666 -6.1889 20 6 -2.4453 -6.0710 -7.0802 21 6 -2.2339 -6.9923 -8.0851 22 6 -1.0042 -7.6136 -8.2108 23 6 -0.7806 -8.6195 -9.3105 24 6 -0.4030 -10.0191 -8.7977 25 6 0.5976 -10.0901 -9.9633 26 6 0.6254 -8.5530 -9.9299 27 6 0.0196 -7.3201 -7.3275 28 6 -0.1771 -6.3972 -6.3211 29 6 0.1973 -2.3446 -1.2347 30 1 -0.4850 0.8400 0.0004 31 1 2.7976 -3.5420 0.6562 32 1 1.1063 -4.0630 0.8672 33 1 2.8002 -4.2870 -1.6644 34 1 2.1901 -5.6259 -0.6612 35 1 -1.1155 -2.5463 -3.6190 36 1 -1.6672 -3.8489 -2.5387 37 1 0.2228 -4.9269 -4.3393 38 1 -3.4057 -5.5866 -6.9833 39 1 -3.0303 -7.2291 -8.7752 40 1 -1.5839 -8.6264 -10.0474 41 1 -1.2128 -10.7449 -8.8726 42 1 0.0703 -10.0115 -7.8158 43 1 1.5488 -10.5500 -9.6949 44 1 0.1723 -10.4993 -10.8796 45 1 1.3798 -8.1444 -9.2575 46 1 0.6456 -8.0950 -10.9187 47 1 0.9759 -7.8116 -7.4285 48 1 0.6241 -6.1659 -5.6348 49 1 0.0768 -1.3499 -1.6638 50 1 -0.6960 -2.6113 -0.6699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035388351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:20 Heat of formation + Delta-G solvation = -15.449245 kcal Electronic energy + Delta-G solvation = -29402.154707 eV Core-core repulsion = 25395.375387 eV Total energy + Delta-G solvation = -4006.779320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.56424 -39.52480 -38.50401 -37.52918 -34.86148 -34.34144 -32.05057 -31.31153 -31.14556 -30.59815 -27.51302 -26.47585 -26.02030 -25.17300 -23.33768 -22.96663 -22.69976 -21.63790 -20.47147 -19.68759 -19.44617 -18.10783 -16.97855 -16.67596 -16.04928 -15.87450 -15.67052 -15.19574 -15.09714 -14.74109 -14.59606 -14.37395 -14.18021 -13.88642 -13.68349 -13.48430 -13.29418 -13.23741 -12.86242 -12.84263 -12.80437 -12.38103 -12.29451 -11.99015 -11.56799 -11.39799 -11.12291 -10.97092 -10.86887 -10.83569 -10.75765 -10.61760 -10.44292 -10.27555 -10.07431 -9.84457 -9.67388 -9.20392 -9.11268 -9.01607 -8.75469 -8.57563 -6.78937 -5.86945 -3.31016 0.67876 1.16321 2.83142 3.27373 3.33729 3.40029 3.41584 3.71915 4.17655 4.20258 4.23660 4.31984 4.41556 4.53589 4.59421 4.68868 4.71516 4.90236 5.10478 5.15228 5.17719 5.28562 5.33179 5.33462 5.38813 5.49897 5.50931 5.54850 5.60409 5.60992 5.72957 5.79161 5.83188 5.90233 5.98169 6.00705 6.08924 6.09939 6.19965 6.22790 6.33993 6.34867 6.47403 6.61913 6.68687 6.75575 7.04044 7.45299 7.64596 7.68426 7.80875 8.30084 8.32933 9.08041 9.70967 10.27923 11.21104 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.002000 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.210936 B =13998.031859 C =14523.509880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.390 6.390 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.132 3.868 16 N -0.714 5.714 17 C 0.552 3.448 18 O -0.542 6.542 19 C -0.132 4.132 20 C -0.058 4.058 21 C -0.126 4.126 22 C -0.050 4.050 23 C -0.078 4.078 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.135 4.135 27 C -0.125 4.125 28 C -0.082 4.082 29 C 0.152 3.848 30 H 0.256 0.744 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.401 0.599 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.096 0.904 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 -19.198 -19.225 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.009 3.991 16 N -0.365 5.365 17 C 0.339 3.661 18 O -0.420 6.420 19 C -0.136 4.136 20 C -0.077 4.077 21 C -0.144 4.144 22 C -0.051 4.051 23 C -0.096 4.096 24 C -0.168 4.168 25 C -0.181 4.181 26 C -0.172 4.172 27 C -0.143 4.143 28 C -0.101 4.101 29 C 0.026 3.974 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.145 0.855 48 H 0.145 0.855 49 H 0.114 0.886 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.108 -18.776 -19.092 26.778 hybrid contribution 1.004 0.941 0.161 1.386 sum 0.897 -17.835 -18.931 26.024 Atomic orbital electron populations 1.70017 1.05240 1.25815 1.53445 1.25070 0.95374 0.98539 1.00652 0.86241 0.79054 0.83413 0.77758 1.21330 1.21631 1.20399 1.19192 0.92649 0.84479 1.42315 0.91313 1.44045 1.33708 1.01371 1.52658 1.21603 0.98634 0.87557 0.93964 1.23005 0.86156 0.99617 0.94010 1.87778 1.42240 1.31501 1.69456 1.23154 0.94974 0.86479 0.95867 0.92610 1.21455 0.97810 0.92356 0.87512 1.45902 1.15473 1.44076 1.31024 1.18282 0.84179 0.81974 0.81627 1.90769 1.24996 1.52823 1.73459 1.20021 0.95374 1.00012 0.98148 1.21283 0.98772 0.95228 0.92413 1.21022 0.96994 0.97473 0.98930 1.19932 0.93563 0.95945 0.95637 1.21618 0.98356 0.93846 0.95797 1.22992 0.99281 0.95755 0.98819 1.22844 0.99882 0.96502 0.98909 1.23050 0.96314 0.96513 1.01345 1.20907 0.99234 0.98801 0.95379 1.21335 0.96055 0.95223 0.97451 1.21307 0.89510 0.97609 0.89000 0.93362 0.91969 0.95531 0.93880 0.90009 0.89824 0.90564 0.76365 0.84625 0.85539 0.88352 0.91231 0.89688 0.91251 0.90126 0.89531 0.91221 0.85497 0.85471 0.88553 0.95003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 11.14 55.49 0.62 -25.18 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 21.35 29.59 -169.99 -5.03 16.32 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 8 H 0.07 1.81 7.88 -52.48 -0.41 1.39 16 9 N -0.59 -14.69 3.05 -171.83 -0.52 -15.21 16 10 C 0.11 2.24 6.74 -3.53 -0.02 2.21 16 11 C 0.05 0.86 6.98 37.31 0.26 1.12 16 12 O -0.39 -7.16 10.14 -35.23 -0.36 -7.51 16 13 C 0.05 1.03 2.86 -26.58 -0.08 0.95 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 15 C 0.13 2.28 5.37 -4.04 -0.02 2.26 16 16 N -0.71 -10.62 5.40 -61.25 -0.33 -10.95 16 17 C 0.55 8.67 7.77 -12.33 -0.10 8.57 16 18 O -0.54 -10.37 16.35 5.32 0.09 -10.29 16 19 C -0.13 -1.68 5.87 -104.97 -0.62 -2.29 16 20 C -0.06 -0.67 9.60 -39.19 -0.38 -1.05 16 21 C -0.13 -1.17 9.69 -39.64 -0.38 -1.55 16 22 C -0.05 -0.43 5.30 -104.53 -0.55 -0.98 16 23 C -0.08 -0.50 3.98 -90.96 -0.36 -0.86 16 24 C -0.13 -0.76 7.54 -25.92 -0.20 -0.96 16 25 C -0.14 -0.73 8.08 -25.92 -0.21 -0.93 16 26 C -0.13 -0.77 7.45 -25.92 -0.19 -0.97 16 27 C -0.13 -1.09 8.57 -39.64 -0.34 -1.43 16 28 C -0.08 -0.84 9.54 -39.19 -0.37 -1.21 16 29 C 0.15 3.58 4.73 -3.54 -0.02 3.56 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.40 5.11 6.39 -40.82 -0.26 4.85 16 38 H 0.14 1.59 7.65 -52.49 -0.40 1.19 16 39 H 0.13 0.89 8.05 -52.49 -0.42 0.47 16 40 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.53 7.71 -51.93 -0.40 0.13 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.09 0.50 6.31 -51.93 -0.33 0.17 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.13 0.86 6.66 -52.49 -0.35 0.51 16 48 H 0.13 1.11 6.41 -52.49 -0.34 0.78 16 49 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 50 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -31.83 398.77 -11.18 -43.02 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.85 Total: 4.44 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -3.81 Total: -0.63 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.24 Total: -51.35 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.27 Total: -17.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.83 -11.18 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035388351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.568 kcal (2) G-P(sol) polarization free energy of solvation -31.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds