Wall clock time and date at job start Wed Apr 1 2020 02:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99618 * 2 1 4 4 H 1.48505 * 109.47164 * 270.00214 * 3 2 1 5 5 H 1.48499 * 109.47560 * 30.00194 * 3 2 1 6 6 H 1.48507 * 109.46866 * 150.00373 * 3 2 1 7 7 C 1.38807 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99499 * 196.90221 * 7 2 1 9 9 N 1.36934 * 120.00290 * 16.91072 * 7 2 1 10 10 C 1.47157 * 120.98052 * 206.24993 * 9 7 2 11 11 C 1.53300 * 108.38341 * 230.51083 * 10 9 7 12 12 O 1.42957 * 109.26046 * 307.71918 * 11 10 9 13 13 C 1.42972 * 114.17113 * 62.50200 * 12 11 10 14 14 H 1.08993 * 109.51342 * 57.44735 * 13 12 11 15 15 C 1.52995 * 109.51347 * 177.55238 * 13 12 11 16 16 N 1.46508 * 109.47048 * 299.89520 * 15 13 12 17 17 C 1.34777 * 120.00046 * 179.97438 * 16 15 13 18 18 O 1.21548 * 119.99953 * 0.02562 * 17 16 15 19 19 C 1.47846 * 119.99873 * 179.97438 * 17 16 15 20 20 C 1.39574 * 120.14139 * 179.97438 * 19 17 16 21 21 C 1.37961 * 119.85073 * 179.97438 * 20 19 17 22 22 C 1.38353 * 120.14617 * 359.97438 * 21 20 19 23 23 C 1.50704 * 119.85776 * 179.97438 * 22 21 20 24 24 C 1.53772 * 113.61424 * 239.99920 * 23 22 21 25 25 C 1.53783 * 87.07958 * 220.01432 * 24 23 22 26 26 C 1.53777 * 87.08207 * 25.43370 * 25 24 23 27 27 C 1.38368 * 120.29342 * 0.26821 * 22 21 20 28 28 C 1.37958 * 120.14003 * 359.50057 * 27 22 21 29 29 C 1.47151 * 120.98583 * 26.22060 * 9 7 2 30 30 H 0.97000 * 120.00310 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.68192 * 350.22617 * 10 9 7 32 32 H 1.08995 * 109.68699 * 110.74627 * 10 9 7 33 33 H 1.09001 * 109.51440 * 67.61786 * 11 10 9 34 34 H 1.08992 * 109.51376 * 187.77077 * 11 10 9 35 35 H 1.08998 * 109.47259 * 179.90082 * 15 13 12 36 36 H 1.08996 * 109.47431 * 59.89441 * 15 13 12 37 37 H 0.97002 * 119.99678 * 0.02562 * 16 15 13 38 38 H 1.08002 * 120.07810 * 359.95723 * 20 19 17 39 39 H 1.08001 * 119.92495 * 179.97438 * 21 20 19 40 40 H 1.09001 * 112.84389 * 11.19387 * 23 22 21 41 41 H 1.08998 * 113.62097 * 105.46387 * 24 23 22 42 42 H 1.09005 * 113.61881 * 334.56287 * 24 23 22 43 43 H 1.09004 * 113.61273 * 139.98219 * 25 24 23 44 44 H 1.08991 * 113.61463 * 270.87996 * 25 24 23 45 45 H 1.08999 * 113.61415 * 89.11621 * 26 25 24 46 46 H 1.08999 * 113.61480 * 220.02355 * 26 25 24 47 47 H 1.07994 * 119.92938 * 179.74539 * 27 22 21 48 48 H 1.07998 * 120.07131 * 180.24860 * 28 27 22 49 49 H 1.09001 * 109.67900 * 9.76347 * 29 9 7 50 50 H 1.09001 * 109.70900 * 249.23707 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3622 -0.3460 10 6 1.8340 -3.6634 0.1611 11 6 1.9812 -4.6207 -1.0272 12 8 0.7655 -4.6295 -1.7791 13 6 0.4242 -3.3661 -2.3549 14 1 1.2368 -3.0274 -2.9974 15 6 -0.8550 -3.5102 -3.1818 16 7 -0.6379 -4.4884 -4.2506 17 6 -1.6344 -4.7798 -5.1100 18 8 -2.7131 -4.2307 -4.9986 19 6 -1.4152 -5.7666 -6.1889 20 6 -2.4453 -6.0710 -7.0802 21 6 -2.2339 -6.9923 -8.0851 22 6 -1.0042 -7.6136 -8.2108 23 6 -0.7806 -8.6195 -9.3105 24 6 -0.4030 -10.0191 -8.7977 25 6 0.5976 -10.0901 -9.9633 26 6 0.6254 -8.5530 -9.9299 27 6 0.0196 -7.3201 -7.3275 28 6 -0.1771 -6.3972 -6.3211 29 6 0.1973 -2.3446 -1.2347 30 1 -0.4850 0.8400 0.0004 31 1 2.7976 -3.5420 0.6562 32 1 1.1063 -4.0630 0.8672 33 1 2.8002 -4.2870 -1.6644 34 1 2.1901 -5.6259 -0.6612 35 1 -1.1155 -2.5463 -3.6190 36 1 -1.6672 -3.8489 -2.5387 37 1 0.2228 -4.9269 -4.3393 38 1 -3.4057 -5.5866 -6.9833 39 1 -3.0303 -7.2291 -8.7752 40 1 -1.5839 -8.6264 -10.0474 41 1 -1.2128 -10.7449 -8.8726 42 1 0.0703 -10.0115 -7.8158 43 1 1.5488 -10.5500 -9.6949 44 1 0.1723 -10.4993 -10.8796 45 1 1.3798 -8.1444 -9.2575 46 1 0.6456 -8.0950 -10.9187 47 1 0.9759 -7.8116 -7.4285 48 1 0.6241 -6.1659 -5.6348 49 1 0.0768 -1.3499 -1.6638 50 1 -0.6960 -2.6113 -0.6699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035388351.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:19 Heat of formation + Delta-G solvation = -33.964663 kcal Electronic energy + Delta-G solvation = -29402.957596 eV Core-core repulsion = 25395.375387 eV Total energy + Delta-G solvation = -4007.582209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.45136 -40.53454 -39.94054 -38.30861 -36.50295 -35.92102 -33.32059 -33.05277 -31.96345 -31.82106 -29.13316 -27.72730 -26.43519 -26.37428 -25.07642 -23.80990 -23.65916 -23.00286 -21.71127 -21.17889 -19.98534 -19.20904 -18.83911 -17.58670 -17.45980 -17.03827 -16.90807 -16.26242 -16.13888 -16.10505 -15.92375 -15.54085 -15.48801 -15.18181 -15.00844 -14.64000 -14.60624 -14.26993 -14.19073 -13.84527 -13.73180 -13.28867 -13.20237 -13.01361 -12.90421 -12.74459 -12.69244 -12.54059 -12.18789 -12.10933 -12.09157 -11.89196 -11.45646 -11.35235 -11.27780 -11.17579 -11.01520 -10.80117 -10.56958 -10.26314 -9.96099 -9.63386 -8.77377 -7.92465 -5.40239 -0.18288 0.40883 1.45820 1.47183 1.56247 1.78944 2.04185 2.46909 2.75678 2.83654 3.22113 3.47459 3.58541 3.69570 3.80992 3.89959 3.91357 4.01685 4.03378 4.04501 4.12312 4.23489 4.26407 4.41604 4.43722 4.48388 4.49787 4.57527 4.66439 4.79382 4.81810 4.84843 4.92105 4.93369 4.95306 5.05759 5.05956 5.15150 5.16371 5.21595 5.26265 5.29082 5.33501 5.39363 5.50980 5.54172 5.58914 5.72393 5.92147 6.24499 6.30859 6.47028 7.03830 7.12239 7.72943 8.26635 9.13384 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018499 B = 0.002000 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.210936 B =13998.031859 C =14523.509880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.265 4.265 8 H 0.076 0.924 9 N -0.613 5.613 10 C 0.101 3.899 11 C 0.057 3.943 12 O -0.390 6.390 13 C 0.077 3.923 14 H 0.066 0.934 15 C 0.143 3.857 16 N -0.703 5.703 17 C 0.551 3.449 18 O -0.587 6.587 19 C -0.157 4.157 20 C -0.072 4.072 21 C -0.127 4.127 22 C -0.043 4.043 23 C -0.081 4.081 24 C -0.132 4.132 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.080 4.080 29 C 0.159 3.841 30 H 0.251 0.749 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.414 0.586 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.152 0.848 48 H 0.142 0.858 49 H 0.067 0.933 50 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.295 -21.520 -21.137 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.021 4.021 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.084 0.916 15 C 0.018 3.982 16 N -0.355 5.355 17 C 0.340 3.660 18 O -0.468 6.468 19 C -0.160 4.160 20 C -0.091 4.091 21 C -0.145 4.145 22 C -0.043 4.043 23 C -0.099 4.099 24 C -0.169 4.169 25 C -0.176 4.176 26 C -0.173 4.173 27 C -0.141 4.141 28 C -0.098 4.098 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.252 0.748 38 H 0.141 0.859 39 H 0.166 0.834 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.170 0.830 48 H 0.160 0.840 49 H 0.085 0.915 50 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 2.374 -21.149 -21.009 29.905 hybrid contribution 0.264 1.549 0.762 1.747 sum 2.638 -19.600 -20.247 28.303 Atomic orbital electron populations 1.70186 1.06776 1.26088 1.55146 1.25869 0.96094 1.01765 1.01056 0.85208 0.78077 0.79153 0.77652 1.21013 1.22406 1.19000 1.19564 0.93079 0.85502 1.41319 0.90683 1.44343 1.33638 1.02452 1.53357 1.21841 0.98586 0.86457 0.95549 1.23097 0.85789 1.00745 0.92426 1.87796 1.43169 1.30510 1.69433 1.22739 0.95724 0.85540 0.94216 0.91568 1.21136 0.96530 0.92702 0.87846 1.45704 1.16115 1.43493 1.30146 1.18819 0.83377 0.81873 0.81910 1.90738 1.26733 1.54664 1.74705 1.19844 0.97129 1.00849 0.98142 1.21326 0.98252 0.96207 0.93327 1.21253 0.98141 0.96635 0.98433 1.20271 0.92970 0.95367 0.95686 1.21737 0.99280 0.93503 0.95376 1.23005 0.99648 0.95244 0.99030 1.22834 0.99913 0.96006 0.98846 1.23077 0.95619 0.97121 1.01473 1.21201 1.00326 0.98072 0.94518 1.21499 0.95258 0.95004 0.98081 1.21080 0.88332 0.97507 0.89868 0.93966 0.90819 0.96738 0.92574 0.86008 0.90585 0.92300 0.74822 0.85892 0.83419 0.87397 0.90897 0.89945 0.90777 0.89412 0.89400 0.90909 0.83033 0.84010 0.91466 0.98241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.58 11.14 21.65 0.24 -55.34 16 2 C -0.05 -2.90 4.95 84.86 0.42 -2.48 16 3 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.26 -14.31 9.65 84.03 0.81 -13.50 16 8 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 9 N -0.61 -30.59 3.05 -697.54 -2.13 -32.72 16 10 C 0.10 4.05 6.74 86.35 0.58 4.63 16 11 C 0.06 1.78 6.98 72.08 0.50 2.28 16 12 O -0.39 -13.64 10.14 -148.98 -1.51 -15.15 16 13 C 0.08 2.91 2.86 30.69 0.09 3.00 16 14 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 15 C 0.14 5.07 5.37 86.38 0.46 5.54 16 16 N -0.70 -20.85 5.40 -465.97 -2.52 -23.37 16 17 C 0.55 17.68 7.77 86.79 0.67 18.36 16 18 O -0.59 -23.62 16.35 -3.87 -0.06 -23.68 16 19 C -0.16 -3.92 5.87 -20.09 -0.12 -4.04 16 20 C -0.07 -1.67 9.60 22.53 0.22 -1.45 16 21 C -0.13 -2.15 9.69 22.23 0.22 -1.93 16 22 C -0.04 -0.62 5.30 -19.80 -0.10 -0.72 16 23 C -0.08 -0.80 3.98 -11.01 -0.04 -0.84 16 24 C -0.13 -1.15 7.54 31.12 0.23 -0.91 16 25 C -0.14 -0.97 8.08 31.12 0.25 -0.72 16 26 C -0.14 -1.13 7.45 31.12 0.23 -0.90 16 27 C -0.12 -1.81 8.57 22.23 0.19 -1.62 16 28 C -0.08 -1.48 9.54 22.53 0.21 -1.27 16 29 C 0.16 7.73 4.73 86.35 0.41 8.14 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 31 H 0.07 2.74 7.96 -2.38 -0.02 2.73 16 32 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 35 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 9.94 6.39 -92.71 -0.59 9.35 16 38 H 0.12 3.07 7.65 -2.91 -0.02 3.04 16 39 H 0.15 1.79 8.05 -2.91 -0.02 1.76 16 40 H 0.11 0.89 8.09 -2.39 -0.02 0.87 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.08 0.77 7.71 -2.38 -0.02 0.76 16 43 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.09 0.71 6.31 -2.39 -0.02 0.70 16 46 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.15 1.47 6.66 -2.91 -0.02 1.45 16 48 H 0.14 2.12 6.41 -2.91 -0.02 2.10 16 49 H 0.07 3.65 6.14 -2.39 -0.01 3.64 16 50 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 Total: -1.00 -71.21 398.77 1.64 -69.56 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.35 Total: 22.73 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.24 Total: 11.56 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.40 Total: -111.43 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.57 Total: -38.84 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -71.21 1.64 -69.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035388351.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.600 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds