Wall clock time and date at job start Wed Apr 1 2020 02:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47003 * 274.14787 * 3 2 1 5 5 H 1.48497 * 109.47206 * 34.14610 * 3 2 1 6 6 H 1.48499 * 109.47375 * 154.15075 * 3 2 1 7 7 C 1.38816 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00616 * 197.02590 * 7 2 1 9 9 N 1.36942 * 119.99553 * 17.03196 * 7 2 1 10 10 C 1.47150 * 120.98455 * 26.60630 * 9 7 2 11 11 C 1.53294 * 108.38655 * 129.44107 * 10 9 7 12 12 O 1.42968 * 109.22085 * 52.30152 * 11 10 9 13 13 C 1.42955 * 114.16820 * 297.41982 * 12 11 10 14 14 H 1.09000 * 109.55600 * 302.63230 * 13 12 11 15 15 C 1.53001 * 109.51493 * 182.50116 * 13 12 11 16 16 N 1.46498 * 109.46703 * 65.25325 * 15 13 12 17 17 C 1.34776 * 120.00225 * 179.97438 * 16 15 13 18 18 O 1.21559 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.47842 * 120.00759 * 180.02562 * 17 16 15 20 20 C 1.39581 * 120.13821 * 359.72431 * 19 17 16 21 21 C 1.37961 * 119.85095 * 179.74691 * 20 19 17 22 22 C 1.38359 * 120.14259 * 0.52698 * 21 20 19 23 23 C 1.50700 * 119.85318 * 179.76411 * 22 21 20 24 24 C 1.53784 * 113.61518 * 39.12116 * 23 22 21 25 25 C 1.53956 * 87.01761 * 220.04710 * 24 23 22 26 26 C 1.53779 * 87.11493 * 25.36231 * 25 24 23 27 27 C 1.38362 * 120.29273 * 359.74758 * 22 21 20 28 28 C 1.37951 * 120.14458 * 359.97438 * 27 22 21 29 29 C 1.47147 * 120.98091 * 206.58373 * 9 7 2 30 30 H 0.97003 * 120.00129 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.68170 * 249.16842 * 10 9 7 32 32 H 1.09000 * 109.68404 * 9.68415 * 10 9 7 33 33 H 1.08998 * 109.51431 * 172.22380 * 11 10 9 34 34 H 1.09003 * 109.51084 * 292.38198 * 11 10 9 35 35 H 1.09004 * 109.47061 * 305.25768 * 15 13 12 36 36 H 1.09002 * 109.47355 * 185.25399 * 15 13 12 37 37 H 0.97001 * 120.00079 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.07548 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.92847 * 180.27582 * 21 20 19 40 40 H 1.08997 * 112.84963 * 170.31431 * 23 22 21 41 41 H 1.09004 * 113.61081 * 334.56613 * 24 23 22 42 42 H 1.08996 * 113.61481 * 105.46396 * 24 23 22 43 43 H 1.08999 * 113.53751 * 270.80758 * 25 24 23 44 44 H 1.09002 * 113.73993 * 139.94257 * 25 24 23 45 45 H 1.08997 * 113.61299 * 220.09115 * 26 25 24 46 46 H 1.08995 * 113.69142 * 89.19646 * 26 25 24 47 47 H 1.07999 * 119.92340 * 179.97438 * 27 22 21 48 48 H 1.08003 * 120.07299 * 180.02562 * 28 27 22 49 49 H 1.09000 * 109.68284 * 110.83303 * 29 9 7 50 50 H 1.08999 * 109.68308 * 350.27886 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4099 2.0970 -1.3965 5 1 1.4942 2.6257 0.7858 6 1 3.5888 1.4164 0.6104 7 6 2.0102 -1.2022 0.0005 8 1 3.0547 -1.2226 0.2744 9 7 1.3705 -2.3622 -0.3463 10 6 0.2045 -2.3451 -1.2439 11 6 0.4385 -3.3695 -2.3600 12 8 0.7732 -4.6317 -1.7779 13 6 1.9838 -4.6230 -1.0178 14 1 2.8086 -4.2923 -1.6490 15 6 2.2714 -6.0332 -0.4985 16 7 2.5370 -6.9253 -1.6297 17 6 2.8176 -8.2254 -1.4113 18 8 2.8497 -8.6577 -0.2757 19 6 3.0862 -9.1257 -2.5528 20 6 3.0445 -8.6337 -3.8584 21 6 3.3013 -9.4779 -4.9189 22 6 3.5890 -10.8119 -4.6911 23 6 3.8633 -11.7294 -5.8547 24 6 4.6934 -11.0759 -6.9722 25 6 3.7743 -11.8035 -7.9702 26 6 2.7059 -11.8070 -6.8643 27 6 3.6264 -11.3072 -3.3997 28 6 3.3771 -10.4724 -2.3301 29 6 1.8290 -3.6628 0.1671 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6930 -2.6098 -0.6849 32 1 0.0882 -1.3511 -1.6757 33 1 -0.4685 -3.4724 -2.9558 34 1 1.2571 -3.0337 -2.9966 35 1 1.4080 -6.3987 0.0575 36 1 3.1419 -6.0086 0.1571 37 1 2.5118 -6.5803 -2.5359 38 1 2.8161 -7.5934 -4.0377 39 1 3.2737 -9.0975 -5.9293 40 1 4.2389 -12.7047 -5.5453 41 1 4.6021 -9.9902 -7.0060 42 1 5.7286 -11.4157 -7.0028 43 1 4.1265 -12.7991 -8.2403 44 1 3.5034 -11.2008 -8.8371 45 1 2.1389 -12.7362 -6.8079 46 1 2.0693 -10.9223 -6.8675 47 1 3.8512 -12.3496 -3.2288 48 1 3.4070 -10.8602 -1.3225 49 1 1.0951 -4.0601 0.8682 50 1 2.7889 -3.5415 0.6692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035388357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:24 Heat of formation + Delta-G solvation = -15.956275 kcal Electronic energy + Delta-G solvation = -29221.644517 eV Core-core repulsion = 25214.843211 eV Total energy + Delta-G solvation = -4006.801307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.61405 -39.59001 -38.52710 -37.57487 -34.96763 -34.32442 -32.14670 -31.36304 -31.17943 -30.49612 -27.66383 -26.47089 -26.04264 -25.19280 -23.24822 -23.01701 -22.75047 -21.75342 -20.57103 -19.69834 -19.47513 -18.17748 -16.92491 -16.72015 -16.15109 -15.96038 -15.71151 -15.21987 -14.97331 -14.91016 -14.71820 -14.38049 -14.22340 -13.84305 -13.70429 -13.52742 -13.38836 -13.17853 -12.95073 -12.88302 -12.75938 -12.49226 -12.33597 -12.05436 -11.60643 -11.43579 -11.15350 -10.99901 -10.88783 -10.86254 -10.75317 -10.64374 -10.43716 -10.27915 -10.03661 -9.96210 -9.67768 -9.25045 -9.11763 -9.09457 -8.84122 -8.57594 -6.78718 -5.87425 -3.31463 0.62225 1.11763 2.75611 3.17583 3.32174 3.39526 3.41054 3.65441 4.15114 4.17546 4.20883 4.29848 4.40274 4.50777 4.55608 4.62978 4.67722 4.84144 5.05609 5.11460 5.12157 5.26195 5.29972 5.31420 5.35711 5.45922 5.47041 5.49048 5.52788 5.56685 5.69502 5.75417 5.76917 5.83244 5.95989 6.00075 6.05205 6.11127 6.16355 6.25653 6.30180 6.33789 6.45430 6.49177 6.62477 6.72834 7.06647 7.47895 7.53459 7.68246 7.81876 8.21990 8.30264 9.08166 9.70754 10.27752 11.20727 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.001892 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.016050 B =14798.510247 C =15524.299293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.715 5.715 17 C 0.554 3.446 18 O -0.543 6.543 19 C -0.134 4.134 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.049 4.049 23 C -0.078 4.078 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.057 4.057 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.402 0.598 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.030 0.970 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.163 -22.999 -15.080 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.366 5.366 17 C 0.342 3.658 18 O -0.421 6.421 19 C -0.137 4.137 20 C -0.100 4.100 21 C -0.143 4.143 22 C -0.049 4.049 23 C -0.097 4.097 24 C -0.172 4.172 25 C -0.181 4.181 26 C -0.169 4.169 27 C -0.144 4.144 28 C -0.076 4.076 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.237 0.763 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.145 0.855 48 H 0.154 0.846 49 H 0.048 0.952 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.954 -23.262 -14.241 28.148 hybrid contribution 0.419 1.418 -0.358 1.522 sum 7.374 -21.844 -14.599 27.288 Atomic orbital electron populations 1.70037 1.05281 1.25681 1.53606 1.25063 0.95357 0.98524 1.00700 0.86219 0.79144 0.83443 0.77633 1.21403 1.21668 1.20310 1.19216 0.92687 0.84450 1.42183 0.91295 1.44063 1.34146 1.01044 1.52477 1.21438 0.89279 0.98233 0.89701 1.23327 0.99049 0.84913 0.96528 1.87794 1.41697 1.32670 1.68739 1.22812 0.87644 0.93831 0.95248 0.92345 1.21454 1.01749 0.87788 0.88371 1.45882 1.70785 1.08913 1.11001 1.18278 0.76928 0.82004 0.88625 1.90766 1.52202 1.75828 1.23347 1.19992 1.05651 0.94927 0.93173 1.21340 0.97092 0.99879 0.91697 1.20914 1.01226 0.93105 0.99044 1.19946 0.96685 0.94055 0.94253 1.21626 0.98092 0.98257 0.91683 1.23077 0.98584 1.00476 0.95056 1.22872 0.97127 1.00997 0.97122 1.22991 0.96056 1.02734 0.95082 1.21028 1.01712 0.99963 0.91730 1.21271 0.94579 0.91875 0.99913 1.21443 0.99017 0.87191 0.92906 0.93482 0.95319 0.88840 0.90026 0.94109 0.90480 0.89958 0.76265 0.85455 0.85453 0.88352 0.89542 0.91197 0.90131 0.91221 0.91217 0.89669 0.85511 0.84640 0.95164 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.17 55.49 0.62 -25.16 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 3 Si 0.91 21.28 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.90 9.64 -15.06 -0.15 -7.04 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.69 3.05 -171.83 -0.52 -15.21 16 10 C 0.14 3.27 5.44 -3.54 -0.02 3.25 16 11 C 0.04 0.75 6.99 37.31 0.26 1.01 16 12 O -0.39 -7.19 10.33 -35.23 -0.36 -7.55 16 13 C 0.06 1.11 2.81 -26.58 -0.07 1.04 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.98 5.34 -4.04 -0.02 1.96 16 16 N -0.71 -9.74 5.46 -61.25 -0.33 -10.07 16 17 C 0.55 8.07 7.77 -12.33 -0.10 7.97 16 18 O -0.54 -9.66 16.35 5.31 0.09 -9.58 16 19 C -0.13 -1.60 5.87 -104.97 -0.62 -2.21 16 20 C -0.08 -0.79 9.54 -39.18 -0.37 -1.16 16 21 C -0.13 -1.04 8.51 -39.64 -0.34 -1.37 16 22 C -0.05 -0.40 5.30 -104.53 -0.55 -0.95 16 23 C -0.08 -0.48 3.97 -90.95 -0.36 -0.84 16 24 C -0.13 -0.74 7.47 -25.82 -0.19 -0.93 16 25 C -0.14 -0.70 8.09 -25.83 -0.21 -0.91 16 26 C -0.13 -0.74 7.54 -25.92 -0.20 -0.93 16 27 C -0.13 -1.10 9.69 -39.64 -0.38 -1.48 16 28 C -0.06 -0.62 9.60 -39.19 -0.38 -1.00 16 29 C 0.12 2.52 6.02 -3.53 -0.02 2.49 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.40 4.72 6.51 -40.82 -0.27 4.46 16 38 H 0.13 1.04 6.41 -52.48 -0.34 0.71 16 39 H 0.13 0.82 6.70 -52.49 -0.35 0.47 16 40 H 0.10 0.52 8.08 -51.93 -0.42 0.10 16 41 H 0.09 0.48 6.38 -51.93 -0.33 0.15 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 0.51 7.63 -51.93 -0.40 0.11 16 47 H 0.13 0.83 8.04 -52.49 -0.42 0.41 16 48 H 0.14 1.48 7.65 -52.48 -0.40 1.08 16 49 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 LS Contribution 399.10 15.07 6.01 6.01 Total: -1.00 -31.84 399.10 -11.19 -43.03 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.86 Total: 3.40 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.80 Total: -1.12 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.24 Total: -50.45 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.28 Total: -17.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.84 -11.19 -43.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035388357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.073 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds