Wall clock time and date at job start Wed Apr 1 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47003 * 274.14787 * 3 2 1 5 5 H 1.48497 * 109.47206 * 34.14610 * 3 2 1 6 6 H 1.48499 * 109.47375 * 154.15075 * 3 2 1 7 7 C 1.38816 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00616 * 197.02590 * 7 2 1 9 9 N 1.36942 * 119.99553 * 17.03196 * 7 2 1 10 10 C 1.47150 * 120.98455 * 26.60630 * 9 7 2 11 11 C 1.53294 * 108.38655 * 129.44107 * 10 9 7 12 12 O 1.42968 * 109.22085 * 52.30152 * 11 10 9 13 13 C 1.42955 * 114.16820 * 297.41982 * 12 11 10 14 14 H 1.09000 * 109.55600 * 302.63230 * 13 12 11 15 15 C 1.53001 * 109.51493 * 182.50116 * 13 12 11 16 16 N 1.46498 * 109.46703 * 65.25325 * 15 13 12 17 17 C 1.34776 * 120.00225 * 179.97438 * 16 15 13 18 18 O 1.21559 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.47842 * 120.00759 * 180.02562 * 17 16 15 20 20 C 1.39581 * 120.13821 * 359.72431 * 19 17 16 21 21 C 1.37961 * 119.85095 * 179.74691 * 20 19 17 22 22 C 1.38359 * 120.14259 * 0.52698 * 21 20 19 23 23 C 1.50700 * 119.85318 * 179.76411 * 22 21 20 24 24 C 1.53784 * 113.61518 * 39.12116 * 23 22 21 25 25 C 1.53956 * 87.01761 * 220.04710 * 24 23 22 26 26 C 1.53779 * 87.11493 * 25.36231 * 25 24 23 27 27 C 1.38362 * 120.29273 * 359.74758 * 22 21 20 28 28 C 1.37951 * 120.14458 * 359.97438 * 27 22 21 29 29 C 1.47147 * 120.98091 * 206.58373 * 9 7 2 30 30 H 0.97003 * 120.00129 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.68170 * 249.16842 * 10 9 7 32 32 H 1.09000 * 109.68404 * 9.68415 * 10 9 7 33 33 H 1.08998 * 109.51431 * 172.22380 * 11 10 9 34 34 H 1.09003 * 109.51084 * 292.38198 * 11 10 9 35 35 H 1.09004 * 109.47061 * 305.25768 * 15 13 12 36 36 H 1.09002 * 109.47355 * 185.25399 * 15 13 12 37 37 H 0.97001 * 120.00079 * 0.02562 * 16 15 13 38 38 H 1.08003 * 120.07548 * 0.02562 * 20 19 17 39 39 H 1.08001 * 119.92847 * 180.27582 * 21 20 19 40 40 H 1.08997 * 112.84963 * 170.31431 * 23 22 21 41 41 H 1.09004 * 113.61081 * 334.56613 * 24 23 22 42 42 H 1.08996 * 113.61481 * 105.46396 * 24 23 22 43 43 H 1.08999 * 113.53751 * 270.80758 * 25 24 23 44 44 H 1.09002 * 113.73993 * 139.94257 * 25 24 23 45 45 H 1.08997 * 113.61299 * 220.09115 * 26 25 24 46 46 H 1.08995 * 113.69142 * 89.19646 * 26 25 24 47 47 H 1.07999 * 119.92340 * 179.97438 * 27 22 21 48 48 H 1.08003 * 120.07299 * 180.02562 * 28 27 22 49 49 H 1.09000 * 109.68284 * 110.83303 * 29 9 7 50 50 H 1.08999 * 109.68308 * 350.27886 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4099 2.0970 -1.3965 5 1 1.4942 2.6257 0.7858 6 1 3.5888 1.4164 0.6104 7 6 2.0102 -1.2022 0.0005 8 1 3.0547 -1.2226 0.2744 9 7 1.3705 -2.3622 -0.3463 10 6 0.2045 -2.3451 -1.2439 11 6 0.4385 -3.3695 -2.3600 12 8 0.7732 -4.6317 -1.7779 13 6 1.9838 -4.6230 -1.0178 14 1 2.8086 -4.2923 -1.6490 15 6 2.2714 -6.0332 -0.4985 16 7 2.5370 -6.9253 -1.6297 17 6 2.8176 -8.2254 -1.4113 18 8 2.8497 -8.6577 -0.2757 19 6 3.0862 -9.1257 -2.5528 20 6 3.0445 -8.6337 -3.8584 21 6 3.3013 -9.4779 -4.9189 22 6 3.5890 -10.8119 -4.6911 23 6 3.8633 -11.7294 -5.8547 24 6 4.6934 -11.0759 -6.9722 25 6 3.7743 -11.8035 -7.9702 26 6 2.7059 -11.8070 -6.8643 27 6 3.6264 -11.3072 -3.3997 28 6 3.3771 -10.4724 -2.3301 29 6 1.8290 -3.6628 0.1671 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6930 -2.6098 -0.6849 32 1 0.0882 -1.3511 -1.6757 33 1 -0.4685 -3.4724 -2.9558 34 1 1.2571 -3.0337 -2.9966 35 1 1.4080 -6.3987 0.0575 36 1 3.1419 -6.0086 0.1571 37 1 2.5118 -6.5803 -2.5359 38 1 2.8161 -7.5934 -4.0377 39 1 3.2737 -9.0975 -5.9293 40 1 4.2389 -12.7047 -5.5453 41 1 4.6021 -9.9902 -7.0060 42 1 5.7286 -11.4157 -7.0028 43 1 4.1265 -12.7991 -8.2403 44 1 3.5034 -11.2008 -8.8371 45 1 2.1389 -12.7362 -6.8079 46 1 2.0693 -10.9223 -6.8675 47 1 3.8512 -12.3496 -3.2288 48 1 3.4070 -10.8602 -1.3225 49 1 1.0951 -4.0601 0.8682 50 1 2.7889 -3.5415 0.6692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035388357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:23 Heat of formation + Delta-G solvation = -34.279678 kcal Electronic energy + Delta-G solvation = -29222.439080 eV Core-core repulsion = 25214.843211 eV Total energy + Delta-G solvation = -4007.595869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.44104 -40.52925 -39.94111 -38.30017 -36.54516 -35.85722 -33.47800 -32.88542 -31.94515 -31.79899 -29.27791 -27.64489 -26.43961 -26.37273 -24.98574 -23.85476 -23.67343 -23.01921 -21.75528 -21.13767 -19.98815 -19.20302 -18.79322 -17.57626 -17.48467 -17.08898 -16.80740 -16.33015 -16.19416 -16.04523 -15.93713 -15.53577 -15.50373 -15.13581 -15.01780 -14.68030 -14.55390 -14.26791 -14.18872 -13.83294 -13.69858 -13.29615 -13.23416 -13.02582 -12.90536 -12.74087 -12.71095 -12.54065 -12.17601 -12.11225 -12.06739 -11.88930 -11.45888 -11.37760 -11.28501 -11.16772 -11.00272 -10.81102 -10.56077 -10.24709 -9.95684 -9.62926 -8.76964 -7.92517 -5.40308 -0.17757 0.41301 1.46565 1.47332 1.57070 1.79753 2.06083 2.47304 2.74948 2.84124 3.22435 3.46617 3.58807 3.69455 3.81040 3.89383 3.90272 3.98021 4.01957 4.04707 4.11801 4.21913 4.26238 4.41962 4.45926 4.48971 4.50390 4.59481 4.70238 4.74215 4.81711 4.84982 4.88401 4.91562 4.92791 5.03891 5.05950 5.14510 5.15809 5.22487 5.26668 5.29650 5.34239 5.39497 5.53975 5.54340 5.60199 5.72351 5.92430 6.23962 6.31367 6.46672 7.04853 7.12260 7.72646 8.26543 9.13594 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019030 B = 0.001892 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.016050 B =14798.510247 C =15524.299293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.080 3.920 14 H 0.072 0.928 15 C 0.140 3.860 16 N -0.707 5.707 17 C 0.554 3.446 18 O -0.584 6.584 19 C -0.158 4.158 20 C -0.081 4.081 21 C -0.125 4.125 22 C -0.043 4.043 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.071 4.071 29 C 0.116 3.884 30 H 0.252 0.748 31 H -0.002 1.002 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.413 0.587 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.148 0.852 48 H 0.125 0.875 49 H 0.017 0.983 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.624 -24.172 -17.632 31.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.336 5.336 10 C 0.017 3.983 11 C -0.023 4.023 12 O -0.309 6.309 13 C 0.020 3.980 14 H 0.090 0.910 15 C 0.016 3.984 16 N -0.358 5.358 17 C 0.343 3.657 18 O -0.466 6.466 19 C -0.161 4.161 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.043 4.043 23 C -0.099 4.099 24 C -0.173 4.173 25 C -0.176 4.176 26 C -0.170 4.170 27 C -0.145 4.145 28 C -0.090 4.090 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.016 0.984 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.250 0.750 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.100 0.900 47 H 0.166 0.834 48 H 0.143 0.857 49 H 0.035 0.965 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.432 -24.455 -16.825 30.858 hybrid contribution -0.035 1.694 0.433 1.748 sum 8.396 -22.762 -16.392 29.280 Atomic orbital electron populations 1.70195 1.06751 1.26084 1.55107 1.25852 0.96109 1.01687 1.00965 0.85180 0.78102 0.79160 0.77551 1.20881 1.22321 1.19204 1.19564 0.93054 0.85511 1.41470 0.90933 1.44337 1.34228 1.01892 1.53180 1.21318 0.88026 0.98406 0.90594 1.23168 1.00853 0.83530 0.94786 1.87810 1.42262 1.32177 1.68662 1.22638 0.87619 0.93967 0.93742 0.91038 1.21226 1.01513 0.86864 0.88830 1.45742 1.70417 1.08583 1.11058 1.18720 0.75904 0.82195 0.88890 1.90737 1.54187 1.76520 1.25131 1.19866 1.08242 0.94899 0.93056 1.21500 0.96606 1.00824 0.90985 1.21190 1.00334 0.93075 0.99672 1.20261 0.95007 0.94410 0.94648 1.21734 0.98728 0.98367 0.91039 1.23100 0.98822 1.00551 0.94784 1.22865 0.96439 1.01414 0.96918 1.23004 0.96043 1.02788 0.95154 1.21260 1.01097 1.00736 0.91429 1.21324 0.95384 0.92018 1.00249 1.21598 0.98821 0.86312 0.94272 0.93922 0.98371 0.91429 0.87281 0.92863 0.91913 0.89242 0.74964 0.84080 0.83279 0.87368 0.89501 0.90844 0.89400 0.90856 0.90903 0.90006 0.83435 0.85699 0.96496 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 11.17 21.65 0.24 -54.54 16 2 C -0.05 -2.78 4.94 84.86 0.42 -2.36 16 3 Si 0.97 43.97 29.59 68.60 2.03 46.00 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.27 -14.39 9.64 84.03 0.81 -13.58 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -30.52 3.05 -697.55 -2.13 -32.65 16 10 C 0.14 6.79 5.44 86.35 0.47 7.26 16 11 C 0.05 1.96 6.99 72.08 0.50 2.46 16 12 O -0.39 -13.78 10.33 -148.98 -1.54 -15.32 16 13 C 0.08 2.66 2.81 30.70 0.09 2.75 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 15 C 0.14 4.18 5.34 86.38 0.46 4.64 16 16 N -0.71 -18.52 5.46 -465.97 -2.54 -21.07 16 17 C 0.55 16.04 7.77 86.79 0.67 16.72 16 18 O -0.58 -21.27 16.35 -3.90 -0.06 -21.33 16 19 C -0.16 -3.64 5.87 -20.09 -0.12 -3.76 16 20 C -0.08 -1.40 9.54 22.53 0.21 -1.19 16 21 C -0.13 -1.75 8.51 22.23 0.19 -1.57 16 22 C -0.04 -0.59 5.30 -19.81 -0.10 -0.70 16 23 C -0.08 -0.76 3.97 -11.01 -0.04 -0.80 16 24 C -0.14 -1.09 7.47 31.18 0.23 -0.86 16 25 C -0.14 -0.96 8.09 31.18 0.25 -0.71 16 26 C -0.13 -1.13 7.54 31.12 0.23 -0.90 16 27 C -0.13 -2.01 9.69 22.23 0.22 -1.80 16 28 C -0.07 -1.51 9.60 22.52 0.22 -1.29 16 29 C 0.12 4.81 6.02 86.36 0.52 5.33 16 30 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 31 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.07 3.57 6.17 -2.39 -0.01 3.55 16 33 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.41 8.90 6.51 -92.71 -0.60 8.30 16 38 H 0.14 1.97 6.41 -2.91 -0.02 1.95 16 39 H 0.15 1.42 6.70 -2.91 -0.02 1.40 16 40 H 0.11 0.83 8.08 -2.39 -0.02 0.81 16 41 H 0.09 0.70 6.38 -2.39 -0.02 0.68 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.77 7.63 -2.39 -0.02 0.75 16 47 H 0.15 1.62 8.04 -2.91 -0.02 1.60 16 48 H 0.13 2.84 7.65 -2.91 -0.02 2.82 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 Total: -1.00 -69.75 399.10 1.57 -68.18 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.34 Total: 21.09 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 5.23 Total: 9.64 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.43 Total: -108.26 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.60 Total: -36.65 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -69.75 1.57 -68.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035388357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.897 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds